genome.fa.s2.2.7.7.80.10.50.1000.312.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  312  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96918159--96918233	38	1.9	39	86	2	107	32	18	26	22	1.97
96920118--96920147	15	1.9	16	93	6	53	20	10	26	43	1.83
96922681--96922735	15	3.7	15	77	20	62	47	1	0	50	1.11
96922841--96923030	9	20.6	9	72	10	89	46	13	2	37	1.57
96922875--96923030	17	8.9	17	69	11	75	46	12	2	39	1.55
96922848--96922994	44	3.4	44	75	16	151	46	12	3	38	1.58
96922814--96923021	96	2.1	96	78	5	213	46	12	2	38	1.56
96928667--96928707	21	2.0	21	100	0	82	24	21	53	0	1.46
96929062--96929205	43	3.3	43	95	0	261	19	27	21	31	1.97
96939428--96939494	10	7.0	9	77	15	64	34	0	0	65	0.93
96939421--96939484	20	3.2	20	88	4	76	34	1	0	64	1.03
96939428--96939494	20	3.5	20	86	8	86	34	0	0	65	0.93
96943191--96943221	3	10.3	3	100	0	62	32	0	32	35	1.58
96943924--96943956	10	3.7	9	88	12	50	78	3	0	18	0.87
96943924--96943993	18	3.8	18	76	9	61	68	1	1	28	1.06
96943979--96944050	20	3.7	20	82	12	69	66	0	8	25	1.19
96943999--96944074	19	3.9	19	78	15	75	64	2	6	26	1.31
96944904--96944995	21	4.6	20	68	15	64	27	5	3	64	1.31
96944889--96944976	39	2.3	39	79	0	95	31	4	3	60	1.34
96946212--96946247	3	12.0	3	100	0	72	33	0	0	66	0.92
96949138--96949170	11	3.1	11	82	8	50	33	0	3	63	1.10
96962643--96963287	337	1.9	334	89	1	1004	35	11	20	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96963403--96963457	9	5.9	9	77	8	56	58	0	3	38	1.16
96964075--96964940	131	6.4	137	84	8	914	25	18	23	32	1.97
96964110--96964896	261	3.0	260	85	5	963	24	18	24	33	1.97
96965141--96965198	21	2.8	21	84	2	64	24	0	29	46	1.53
96965144--96965368	94	2.4	93	92	2	389	19	0	32	47	1.50
96965248--96965378	14	9.2	14	69	9	68	19	0	32	47	1.50
96965304--96965371	29	2.3	29	77	5	75	16	0	33	50	1.45
96966050--96966104	22	2.6	21	74	5	58	70	1	5	21	1.16
96966237--96966296	25	2.4	25	97	0	111	8	36	23	31	1.84
96966716--96966801	35	2.5	35	92	0	154	13	46	20	18	1.83
96968188--96968219	5	6.6	5	92	7	57	81	0	0	18	0.70
96968189--96968219	9	3.3	9	95	4	53	80	0	0	19	0.71
96972636--96972667	5	6.6	5	92	7	57	81	0	0	18	0.70
96972637--96972667	9	3.3	9	95	4	53	80	0	0	19	0.71
96983719--96983870	75	2.0	74	85	8	202	26	10	19	44	1.83
96984062--96984157	35	2.7	34	80	12	122	20	21	15	41	1.90
96984143--96984361	35	6.1	34	67	17	88	27	20	15	36	1.93
96984143--96984668	38	14.4	35	66	17	128	28	19	16	35	1.94
96984309--96984560	37	6.8	37	72	12	144	28	20	17	34	1.95
96984103--96984400	109	2.8	107	76	6	298	27	19	15	37	1.92
96984937--96985002	23	2.8	23	86	2	78	45	16	12	25	1.82
96987584--96987613	14	2.1	14	100	0	60	43	6	13	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96993838--96993888	24	2.1	24	96	0	93	49	5	11	33	1.64
96994413--96994497	27	3.4	25	71	17	70	57	3	9	29	1.47
96994797--96994850	21	2.5	20	80	11	54	59	0	3	37	1.15
96999803--96999834	3	10.7	3	100	0	64	31	0	34	34	1.58
97000324--97000362	16	2.4	17	86	4	53	38	0	2	58	1.12
97000536--97000578	18	2.4	18	80	7	52	41	2	2	53	1.26
97008371--97008438	2	34.5	2	74	14	52	39	4	1	54	1.30
97008457--97008508	25	2.1	25	85	7	70	32	3	7	55	1.46
97024869--97024911	10	4.3	10	82	11	52	67	2	6	23	1.27
97028797--97028822	2	13.0	2	100	0	52	50	0	0	50	1.00
97029155--97029190	3	12.0	3	87	0	54	63	2	2	30	1.22
97030966--97031075	26	4.2	26	92	0	175	33	5	23	37	1.78
97034485--97034509	13	1.9	13	100	0	50	8	56	32	4	1.47
97035000--97035038	18	2.1	19	86	13	55	5	2	38	53	1.37
97037950--97038115	41	4.1	40	81	9	176	37	18	17	26	1.92
97037950--97038115	80	2.0	82	83	4	212	37	18	17	26	1.92
97038093--97038176	42	2.0	42	95	0	150	29	16	9	44	1.80
97043885--97043927	10	4.3	10	82	11	52	67	2	6	23	1.27
97044531--97044619	43	2.2	40	83	6	106	22	13	31	32	1.93
97048189--97048224	3	12.0	3	87	0	54	63	2	2	30	1.22
97050296--97050330	13	2.7	13	100	0	70	5	28	48	17	1.69
97051495--97051566	30	2.4	29	81	6	74	52	5	0	41	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97052322--97052351	16	1.9	16	93	6	53	30	0	0	70	0.88
97052441--97052465	12	2.1	12	100	0	50	52	0	0	48	1.00
97055365--97055479	59	1.9	60	84	5	153	37	8	17	36	1.81
97062844--97062883	22	1.9	20	85	10	53	22	5	5	67	1.30
97065545--97065575	12	2.6	12	94	0	53	35	35	3	25	1.72
97068308--97068336	4	7.5	4	92	7	51	75	0	0	24	0.80
97076421--97076732	171	1.8	171	89	1	491	40	14	13	31	1.85
97078148--97078185	13	2.9	13	96	0	67	39	23	7	28	1.83
97078682--97078715	10	3.4	10	100	0	68	20	26	11	41	1.87
97079655--97079710	3	18.3	3	79	17	62	62	0	3	33	1.12
97079916--97079966	3	17.3	3	83	4	59	58	0	7	33	1.27
97079854--97079946	47	2.0	47	81	14	111	58	1	8	32	1.36
97080295--97080388	37	2.8	32	74	19	100	58	5	4	31	1.40
97080456--97080500	23	2.0	23	91	8	74	51	11	0	37	1.38
97080641--97080670	15	2.1	14	93	6	51	56	3	0	40	1.16
97081241--97081281	18	2.3	18	87	8	57	75	0	9	14	1.04
97081240--97081284	21	2.1	22	87	4	65	75	0	8	15	1.03
97082923--97082956	18	1.9	17	94	5	59	61	0	0	38	0.96
97086534--97086573	21	1.9	21	90	10	64	57	15	10	17	1.64
97089053--97089092	19	2.2	19	86	4	55	25	0	0	75	0.81
97090130--97090168	19	2.1	19	100	0	78	48	5	10	35	1.59
97091843--97091941	50	2.0	50	100	0	198	42	16	3	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97094678--97094704	2	13.5	2	100	0	54	48	0	0	51	1.00
97099288--97099633	130	2.7	130	80	4	358	35	18	18	27	1.95
97100156--97100187	16	1.9	17	93	6	57	59	3	6	31	1.38
97104449--97104497	3	16.3	3	95	0	89	0	30	0	69	0.89
97105665--97105730	33	2.0	33	100	0	132	36	30	6	27	1.81
97108216--97108260	2	22.5	2	100	0	90	51	0	0	48	1.00
97108776--97108806	16	1.9	16	93	0	53	51	3	0	45	1.17
97117600--97117718	53	2.2	53	96	0	220	34	17	19	28	1.95
97124030--97124077	24	2.0	24	87	0	69	33	4	39	22	1.74
97127881--97128051	71	2.4	71	93	0	297	49	12	14	22	1.77
97130862--97130893	16	2.1	16	94	5	57	31	3	6	59	1.38
97131120--97131160	15	2.5	17	80	11	50	24	0	2	73	0.96
97132018--97132050	16	2.1	15	94	5	57	27	6	24	42	1.78
97136769--97141782	220	22.8	219	82	2	5488	29	21	15	33	1.94
97136769--97150004	440	29.9	439	76	7	9553	29	21	15	33	1.94
97136769--97150004	660	19.9	658	79	5	12231	29	21	15	33	1.94
97141807--97150004	220	37.3	220	84	2	9702	29	22	15	33	1.94
97153075--97153115	18	2.3	18	87	8	57	29	21	0	48	1.50
97153225--97153359	39	3.4	39	74	11	116	27	25	20	25	1.99
97154307--97154353	25	1.9	25	86	4	69	10	10	6	72	1.28
97156274--97156385	50	2.3	47	81	14	131	34	14	22	28	1.93
97163760--97164981	220	5.6	218	85	2	1567	28	23	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97164148--97165809	827	2.0	829	88	1	2472	27	23	16	32	1.96
97164977--97165929	220	4.3	220	89	0	1408	27	22	17	33	1.96
97166532--97166580	20	2.4	21	87	12	68	55	0	2	42	1.11
97166829--97166858	16	1.9	15	93	6	51	50	6	0	43	1.28
97173179--97173218	18	2.2	19	86	4	55	30	0	15	55	1.41
97175412--97175458	15	3.1	15	87	0	76	31	19	0	48	1.49
97175725--97175753	7	4.3	7	91	8	51	13	0	13	72	1.13
97178189--97178364	50	3.5	50	91	1	264	36	14	22	26	1.93
97178340--97178515	31	5.8	31	80	12	186	30	19	25	24	1.98
97178338--97178506	58	2.8	60	82	9	211	31	19	24	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318