genome.fa.s2.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  152  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46712296--46712385	29	3.1	28	82	7	110	27	12	28	31	1.93
46714735--46714905	46	3.7	45	79	12	204	28	27	21	22	1.99
46714740--46714909	92	1.8	93	94	1	306	28	28	21	21	1.99
46729473--46729581	24	4.6	23	84	7	128	34	23	16	24	1.95
46729473--46729581	48	2.3	48	90	3	166	34	23	16	24	1.95
46735598--46735770	46	3.7	46	72	7	170	30	26	20	22	1.99
46738163--46738236	29	2.6	29	95	0	139	27	14	31	27	1.95
46738220--46738295	29	2.6	29	78	0	89	22	19	35	22	1.96
46738163--46738295	58	2.3	58	80	2	133	24	17	33	24	1.96
46741832--46741856	4	6.2	4	100	0	50	24	0	0	76	0.80
46750125--46750181	17	3.4	17	90	0	96	8	19	43	28	1.80
46750254--46750329	29	2.6	29	81	4	91	27	17	32	22	1.96
46756080--46756289	40	5.2	40	88	2	305	21	28	24	25	1.99
46760941--46760987	24	2.0	24	86	0	67	57	19	12	10	1.64
46762479--46762568	29	3.1	28	84	7	119	28	12	28	30	1.93
46770748--46771032	48	5.9	48	81	3	268	24	29	18	27	1.98
46778871--46778901	15	2.1	15	93	0	53	19	22	9	48	1.78
46781116--46781164	20	2.5	20	93	0	80	30	22	20	26	1.98
46795476--46795605	40	3.2	40	77	13	142	24	26	24	23	2.00
46795492--46795643	40	3.8	40	80	5	155	22	26	24	26	2.00
46795492--46795643	80	1.9	80	83	5	200	22	26	24	26	2.00
46798484--46798653	92	1.8	92	93	0	295	29	29	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46798479--46798650	46	3.7	46	78	9	197	30	28	20	20	1.98
46810668--46810854	71	2.7	68	93	5	281	18	28	18	34	1.95
46810691--46810854	71	2.3	71	100	0	328	18	28	17	35	1.94
46810691--46810888	71	2.8	70	92	3	276	20	28	17	33	1.95
46818237--46818423	71	2.7	68	93	5	281	18	28	18	34	1.95
46818260--46818423	71	2.3	71	100	0	328	18	28	17	35	1.94
46818260--46818457	71	2.8	70	92	3	276	20	28	17	33	1.95
46828038--46828067	14	2.1	15	93	6	53	56	13	10	20	1.65
46830346--46830448	29	3.6	28	81	5	116	21	16	33	29	1.95
46838239--46838341	29	3.6	28	81	5	116	21	16	33	29	1.95
46842385--46842413	10	3.0	10	95	5	51	6	31	0	62	1.22
46844247--46844289	17	2.5	17	80	3	50	13	6	4	74	1.19
46844269--46844323	24	2.3	25	81	9	69	14	10	3	70	1.28
46846092--46846132	19	2.2	19	100	0	82	24	0	29	46	1.53
46855286--46855387	50	2.0	50	100	0	204	30	5	15	48	1.69
46858694--46858824	30	4.5	30	86	8	171	32	13	25	28	1.94
46858694--46858824	58	2.2	58	86	4	174	32	13	25	28	1.94
46868814--46869241	24	17.9	24	97	0	777	21	19	24	34	1.96
46876793--46876971	40	4.4	40	84	2	207	26	24	26	22	2.00
46878542--46878664	27	4.7	26	78	12	117	39	22	9	28	1.86
46878563--46878695	27	5.0	27	81	8	121	38	22	10	28	1.87
46878534--46878710	54	3.3	53	78	7	180	39	22	9	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46878687--46879005	27	11.8	27	87	1	424	31	22	6	40	1.79
46878687--46879007	81	4.0	81	89	2	473	30	22	6	40	1.79
46879007--46879251	27	9.1	27	84	0	249	35	19	20	24	1.95
46879009--46879246	54	4.4	54	84	3	284	35	18	20	24	1.95
46879009--46879246	81	3.0	80	87	3	325	35	18	20	24	1.95
46879668--46879776	6	17.7	6	68	20	57	18	16	15	49	1.80
46879659--46879792	31	4.3	31	81	7	130	17	15	14	51	1.77
46883837--46883882	18	2.4	18	89	7	65	58	21	0	19	1.39
46892815--46892855	21	2.0	21	90	0	64	19	29	21	29	1.98
46896928--46897040	45	2.5	44	82	4	127	38	16	21	23	1.92
46898302--46898962	330	2.0	330	94	0	1169	25	19	18	37	1.94
46899693--46899738	19	2.4	19	89	10	67	4	10	4	80	0.99
46899712--46899764	16	3.5	15	80	19	65	5	11	1	81	0.94
46899692--46899765	10	7.3	10	72	4	51	5	10	2	81	0.96
46900953--46900984	12	2.5	13	95	5	57	6	18	40	34	1.76
46911200--46911231	6	5.7	6	85	14	50	46	0	0	53	1.00
46911200--46911232	10	3.0	11	91	8	50	45	0	0	54	0.99
46918325--46918549	46	4.9	46	89	2	317	20	21	14	44	1.86
46918514--46918637	45	2.8	45	86	2	169	21	24	17	36	1.95
46918325--46918657	46	7.3	45	82	7	289	20	22	16	40	1.91
46918648--46918804	33	4.8	33	70	9	95	22	26	20	30	1.98
46920366--46920400	8	4.4	8	89	10	54	77	0	0	22	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46920668--46920727	31	1.9	31	83	6	77	30	18	1	50	1.57
46926079--46926365	49	5.9	49	93	2	490	34	9	26	29	1.88
46926079--46926365	96	2.9	97	93	3	488	34	9	26	29	1.88
46926078--46926365	145	2.0	145	95	1	515	34	9	26	29	1.88
46926357--46926468	48	2.3	48	98	0	215	34	5	26	33	1.79
46928126--46928506	40	9.6	40	87	4	405	25	19	27	27	1.99
46932078--46932413	49	6.9	49	95	1	595	34	9	27	29	1.88
46932077--46932413	145	2.3	145	96	1	611	34	9	27	29	1.88
46932405--46932508	48	2.2	48	96	0	190	33	5	28	31	1.81
46932548--46932636	37	2.4	37	94	1	151	22	16	33	26	1.96
46935082--46935198	27	4.4	26	68	21	73	35	17	23	23	1.95
46937203--46937387	40	4.7	40	88	6	236	26	26	21	25	2.00
46937170--46937387	79	2.7	79	82	8	257	26	26	21	26	1.99
46945259--46945443	40	4.7	40	87	6	218	26	27	21	25	1.99
46955942--46955996	26	2.1	26	96	0	101	40	21	3	34	1.71
46958813--46959129	47	6.7	47	90	2	447	32	7	31	28	1.85
46958813--46959129	96	3.3	93	87	6	447	32	7	31	28	1.85
46969687--46969727	21	1.9	22	85	5	57	31	24	4	39	1.76
46973985--46974099	44	2.6	45	87	5	162	20	23	13	42	1.88
46973972--46974144	45	3.9	44	81	8	181	20	22	15	41	1.90
46986623--46986808	50	3.7	50	81	1	203	30	27	16	25	1.97
46989750--46989855	40	2.7	39	85	10	135	24	25	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46994571--46994746	46	3.8	46	78	10	178	21	19	28	29	1.98
46994568--46994739	93	1.8	93	88	0	263	22	20	29	28	1.98
46998443--46998492	19	2.7	19	84	6	68	26	4	2	68	1.18
46998573--46998641	22	3.3	21	78	12	70	36	4	0	59	1.17
46998741--46998816	24	3.1	24	74	23	70	35	2	3	57	1.31
47002819--47002868	15	3.5	15	82	15	61	24	24	10	42	1.85
47009122--47009270	80	1.9	80	81	2	183	22	30	24	22	1.99
47009163--47009270	40	2.7	38	85	8	128	21	29	25	23	1.99
47014208--47014730	120	4.5	108	81	9	472	34	16	19	30	1.93
47014316--47014730	120	3.5	119	88	0	587	33	15	19	30	1.93
47016407--47016439	17	1.9	17	93	0	57	27	3	0	69	1.03
47016483--47016606	18	6.8	18	68	16	69	34	5	1	58	1.32
47016532--47016596	21	3.1	21	76	10	71	35	4	0	60	1.18
47018791--47018897	54	2.1	47	72	23	108	34	16	25	23	1.95
47018817--47018935	54	2.2	52	89	2	175	34	18	25	21	1.96
47018817--47018953	54	2.6	54	85	2	134	33	18	25	21	1.97
47019941--47019965	13	1.9	13	100	0	50	24	40	32	4	1.73
47025495--47025538	21	2.0	21	82	4	52	38	15	13	31	1.87
47026253--47026308	28	2.0	28	100	0	112	25	7	25	42	1.80
47032057--47032361	49	6.3	49	95	2	537	30	30	7	31	1.86
47035900--47036060	40	4.1	40	96	0	288	23	29	22	24	1.99
47036114--47036188	38	2.0	38	81	5	89	24	24	18	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47038357--47038626	49	5.6	49	93	3	458	30	30	7	31	1.85
47038549--47038693	68	2.1	68	98	1	283	33	29	5	31	1.80
47038500--47038729	117	2.0	117	100	0	460	32	29	6	31	1.84
47038598--47038644	19	2.5	19	96	3	87	38	27	0	34	1.57
47038617--47038729	49	2.3	49	100	0	226	31	29	7	31	1.84
47041168--47041281	42	2.7	41	86	2	147	29	24	14	31	1.94
47041211--47041371	47	3.6	47	79	12	151	30	24	14	29	1.95
47041250--47041375	47	2.7	48	81	9	161	29	25	15	29	1.96
47041380--47041415	7	5.1	7	100	0	72	13	27	13	44	1.82
47041414--47041562	31	4.8	31	85	3	201	25	26	19	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318