genome.fa.s2.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  103  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31478583--31478697	55	2.1	56	83	8	146	34	21	24	19	1.96
31478608--31478697	27	3.2	27	85	7	119	32	23	24	20	1.98
31478803--31478864	28	2.2	29	88	2	90	30	9	27	32	1.89
31485295--31485487	49	3.9	49	82	1	242	29	26	18	25	1.98
31485293--31485488	99	2.0	99	88	0	293	28	27	18	26	1.98
31485733--31485786	27	2.0	27	85	0	72	38	12	9	38	1.76
31494110--31494281	93	1.8	93	89	0	272	27	29	21	21	1.99
31494102--31494277	46	3.8	46	78	4	192	28	28	21	21	1.98
31496985--31497219	49	4.7	49	80	4	265	31	26	17	24	1.97
31503707--31503770	31	2.1	31	90	0	101	25	23	15	35	1.94
31503962--31504125	24	7.0	24	87	7	221	27	21	23	27	1.99
31504176--31504235	20	3.0	20	87	0	93	35	18	11	35	1.87
31504278--31504325	25	1.9	25	86	0	69	25	16	25	33	1.96
31505480--31505535	27	2.1	26	86	3	76	21	25	21	32	1.98
31505465--31505543	26	3.0	27	80	8	85	22	24	18	34	1.97
31505597--31505652	27	2.1	26	83	9	69	39	12	10	37	1.78
31505605--31505743	27	5.0	27	71	14	95	30	8	20	40	1.83
31505696--31506150	27	16.9	27	80	6	271	39	8	22	29	1.83
31505722--31506123	54	7.4	54	83	3	477	40	8	22	28	1.83
31505722--31506123	81	5.0	81	85	7	476	40	8	22	28	1.83
31506048--31506351	27	11.3	27	83	6	183	32	8	20	37	1.84
31506119--31506330	81	2.6	80	82	4	237	31	8	20	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31506201--31506368	27	6.3	26	87	2	174	31	7	19	41	1.78
31508285--31508390	48	2.2	48	93	0	176	33	27	5	33	1.80
31509556--31509586	2	15.5	2	100	0	62	51	0	0	48	1.00
31511847--31511889	14	3.1	14	80	6	52	48	16	4	30	1.66
31514221--31514554	155	2.2	155	81	7	385	30	14	23	31	1.94
31514887--31514945	21	2.9	21	76	2	57	22	0	30	47	1.51
31519472--31519621	74	2.0	74	100	0	300	28	8	10	53	1.63
31524876--31525018	60	2.3	62	81	10	170	26	27	20	25	1.99
31527958--31528218	41	6.4	40	85	4	136	36	21	23	18	1.95
31528047--31528241	41	4.8	41	94	0	327	32	21	24	21	1.98
31528417--31528492	36	2.0	39	85	7	104	30	5	23	40	1.77
31528651--31528702	25	2.1	25	96	0	95	28	7	21	42	1.80
31529071--31529101	15	2.1	15	93	0	53	58	0	9	32	1.31
31534265--31534304	21	1.9	21	94	0	71	30	10	12	47	1.74
31541339--31541489	40	3.8	40	80	6	155	26	23	27	22	2.00
31541376--31541505	40	3.3	39	78	11	147	23	24	26	24	2.00
31544848--31544953	24	4.4	24	89	1	149	18	37	5	37	1.75
31547107--31547149	20	2.2	20	95	0	77	37	11	13	37	1.82
31549604--31549721	41	3.1	41	60	28	98	32	17	28	21	1.96
31549572--31549735	71	2.3	71	100	0	328	35	17	28	18	1.94
31557170--31557287	41	3.1	41	60	28	98	32	17	28	21	1.96
31557138--31557301	71	2.3	71	100	0	328	35	17	28	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31560938--31561006	20	3.4	20	68	9	50	14	31	18	34	1.91
31565663--31566008	175	2.0	175	97	0	656	31	14	20	34	1.92
31567002--31567044	21	2.0	21	95	0	77	25	18	25	30	1.98
31567125--31567155	14	2.2	14	94	0	53	19	12	9	58	1.62
31575703--31575907	40	5.1	40	84	4	220	25	26	21	25	2.00
31578118--31578245	55	2.3	55	78	2	141	31	32	22	13	1.92
31582583--31582620	14	2.9	13	81	11	51	18	13	10	57	1.63
31585215--31585263	25	1.9	26	83	4	64	22	22	22	32	1.98
31596549--31596595	22	2.1	22	96	0	85	42	27	6	23	1.78
31597214--31597318	44	2.4	43	86	7	151	34	22	19	23	1.96
31597152--31597316	43	3.9	42	77	10	147	32	25	19	22	1.97
31604786--31605032	40	6.2	40	83	6	261	25	27	22	25	2.00
31604802--31605030	119	1.9	120	83	6	295	24	27	23	25	2.00
31612842--31613088	40	6.2	40	84	5	268	25	27	22	25	2.00
31612858--31613086	119	1.9	120	83	4	302	24	27	23	25	2.00
31619355--31619410	26	2.2	26	80	6	60	28	19	16	35	1.93
31625035--31625076	18	2.5	17	85	11	59	7	16	0	76	1.00
31625029--31625068	21	1.9	21	85	10	55	10	20	0	70	1.16
31629251--31629439	49	3.8	49	83	4	236	26	19	25	28	1.99
31629248--31629434	99	1.9	100	92	1	313	25	20	25	28	1.99
31634263--31634429	40	4.2	40	82	2	185	24	26	22	26	2.00
31642283--31642449	40	4.2	40	82	2	185	24	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31646455--31646635	49	3.7	49	81	1	236	25	17	27	29	1.98
31646456--31646643	99	1.9	99	94	0	331	26	18	26	29	1.98
31652983--31653107	63	2.0	62	85	1	169	25	21	22	30	1.99
31654150--31654211	13	4.8	13	71	0	52	41	22	3	32	1.70
31654301--31654510	45	4.7	45	80	5	203	23	22	17	36	1.95
31654297--31654510	90	2.4	90	83	3	261	23	22	17	35	1.95
31654455--31654601	45	3.2	46	90	1	217	20	18	16	44	1.86
31668293--31668335	19	2.3	19	100	0	86	37	9	20	32	1.85
31685762--31685892	47	2.8	48	83	1	165	33	28	14	23	1.94
31690554--31690704	40	3.8	40	80	6	164	26	23	27	23	2.00
31693962--31694127	40	4.2	40	78	8	160	26	21	27	24	1.99
31697341--31697522	24	7.9	21	87	7	96	36	27	17	19	1.94
31697362--31697526	48	3.5	48	95	3	293	38	27	16	17	1.91
31697362--31697526	72	2.3	70	93	4	280	38	27	16	17	1.91
31705220--31705294	24	3.1	24	98	0	141	37	28	16	18	1.92
31708012--31708111	28	3.5	28	76	8	94	28	28	22	22	1.99
31707984--31708115	57	2.3	57	84	3	169	27	29	19	23	1.98
31708143--31708396	40	6.3	40	96	0	445	29	27	18	24	1.98
31715614--31715688	11	7.5	10	75	19	68	37	9	18	34	1.83
31715643--31715679	9	3.9	9	86	13	56	35	2	21	40	1.68
31715632--31715688	20	2.8	20	94	0	96	38	7	19	35	1.79
31715736--31715807	25	2.9	25	83	10	85	27	19	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31715849--31715907	11	5.7	11	76	15	72	37	11	18	32	1.87
31715851--31715907	20	2.8	20	100	0	114	36	10	19	33	1.86
31715584--31716024	219	2.0	219	97	0	837	30	12	23	33	1.91
31715955--31716026	25	3.0	23	81	8	72	27	19	22	30	1.98
31715955--31716012	25	2.4	25	85	8	75	29	17	22	31	1.96
31718270--31718298	14	2.1	14	93	6	51	34	0	10	55	1.34
31718710--31718783	21	3.5	21	90	0	112	29	20	48	1	1.58
31719035--31719100	31	2.1	31	86	5	89	15	10	21	53	1.72
31722873--31723058	40	4.7	40	86	5	234	24	21	26	26	1.99
31722873--31723081	40	5.2	40	80	9	196	25	21	26	26	1.99
31726874--31726929	28	2.0	28	92	0	94	35	19	19	25	1.95
31728852--31729027	46	3.8	46	79	12	216	20	21	29	28	1.98
31728849--31729020	93	1.8	93	96	0	317	20	21	29	27	1.98
31734264--31734292	15	1.9	15	100	0	58	24	20	13	41	1.89
31738527--31738703	46	3.9	44	78	11	185	23	18	28	29	1.98
31738527--31738695	93	1.8	93	88	2	259	23	18	28	28	1.98
31739317--31739370	21	2.6	21	100	0	108	48	11	14	25	1.77
31741605--31741677	37	2.0	37	97	0	137	26	31	20	21	1.98
31741760--31742059	49	6.1	49	96	0	537	30	27	9	33	1.87
31751335--31751833	47	10.6	47	96	0	890	33	8	28	29	1.87
31751446--31751521	22	3.3	22	67	16	64	32	11	28	26	1.92
31751335--31751833	237	2.1	235	95	1	908	33	8	28	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31753650--31753701	20	2.6	20	87	0	77	13	30	32	23	1.93
31754968--31755188	48	4.8	48	73	17	164	30	25	20	23	1.99
31764101--31764192	40	2.3	40	81	7	107	19	23	19	36	1.95
31764720--31764774	22	2.6	21	91	8	78	41	5	7	45	1.55
31764728--31764774	22	2.1	22	100	0	94	34	6	8	51	1.58
31764737--31764786	22	2.3	22	82	6	57	44	4	8	44	1.52
31772850--31772977	66	1.9	65	84	6	168	32	17	29	20	1.96
31772821--31772999	63	2.8	63	78	9	193	30	17	29	22	1.97
31774083--31774113	2	15.5	2	100	0	62	48	0	0	51	1.00
31777765--31777808	24	2.0	21	82	13	52	54	2	2	40	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318