genome.fa.s2.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  154  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47316192--47316240	20	2.5	20	100	0	98	36	10	24	28	1.88
47316530--47316633	45	2.3	45	91	0	172	21	18	19	41	1.91
47316617--47316658	6	6.8	6	91	2	57	19	21	16	42	1.89
47316617--47316679	24	2.6	24	80	9	65	22	20	17	39	1.92
47321063--47321144	26	3.2	26	96	0	155	36	25	7	30	1.83
47325509--47325535	13	2.1	13	100	0	54	55	0	7	37	1.28
47325749--47325818	20	3.5	20	68	14	56	32	1	7	58	1.34
47327376--47327482	45	2.4	45	92	3	171	21	17	18	42	1.90
47327361--47327480	45	2.5	51	76	18	146	20	18	19	41	1.90
47334101--47334185	21	4.1	21	75	1	64	47	18	20	14	1.83
47334108--47334247	42	3.3	41	80	4	147	45	18	20	15	1.85
47334127--47334194	21	3.2	21	71	8	66	45	19	20	14	1.85
47335961--47336044	36	2.4	35	84	6	98	40	16	19	23	1.91
47336672--47336721	25	2.0	25	88	0	73	40	10	24	26	1.86
47359741--47359784	20	2.2	20	87	0	61	50	13	0	36	1.42
47359512--47359982	160	2.9	159	80	8	522	42	9	4	43	1.57
47360297--47360347	3	16.7	3	83	4	57	56	0	5	37	1.23
47362996--47363061	33	2.0	33	100	0	132	24	24	9	42	1.83
47367494--47367578	44	2.0	44	90	4	138	43	3	8	44	1.51
47367748--47367783	18	2.1	18	89	5	56	33	0	0	66	0.92
47370771--47370837	24	2.8	24	95	0	125	17	13	29	38	1.88
47374611--47374644	13	2.6	13	100	0	68	44	0	5	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47377027--47377207	79	2.3	80	80	8	208	26	28	20	24	1.99
47377027--47377207	40	4.6	40	77	10	174	26	28	20	24	1.99
47383542--47383644	29	3.6	28	81	5	116	21	16	33	29	1.95
47391342--47391444	29	3.6	28	81	5	116	21	16	33	29	1.95
47393964--47394066	29	3.6	28	81	5	116	21	16	33	29	1.95
47398627--47398777	40	3.8	40	86	2	189	24	29	21	23	1.99
47405353--47405423	20	3.5	20	94	0	124	42	11	16	29	1.83
47405486--47405605	52	2.4	50	91	6	190	27	21	22	28	1.99
47405486--47405605	26	4.7	26	84	7	158	27	21	22	28	1.99
47405811--47405893	31	2.7	31	94	3	143	28	15	26	28	1.96
47408087--47408183	42	2.3	42	80	0	113	16	22	15	45	1.85
47408161--47408204	21	2.1	21	91	0	70	18	27	15	38	1.91
47409862--47409909	20	2.4	21	86	6	64	10	4	33	52	1.55
47414246--47414345	42	2.4	42	98	0	191	28	16	35	21	1.94
47414359--47414428	27	2.5	28	86	2	97	27	14	25	32	1.94
47421465--47421571	42	2.5	42	96	0	196	28	14	33	22	1.94
47421579--47421648	27	2.5	28	86	2	97	27	14	25	32	1.94
47425653--47425764	53	2.1	53	98	0	215	25	28	10	35	1.89
47429473--47429528	14	3.9	14	81	6	67	37	1	1	58	1.19
47429472--47429749	138	2.0	138	95	1	504	34	15	5	44	1.68
47432513--47432674	79	2.0	80	91	1	263	48	9	8	33	1.66
47433108--47433155	18	2.4	18	80	16	51	25	0	8	66	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47433650--47433694	23	1.9	23	86	4	63	22	0	22	55	1.44
47433715--47433769	16	3.4	16	82	5	67	32	10	27	29	1.91
47433752--47433844	44	2.1	44	82	8	107	32	7	23	36	1.83
47436612--47436643	15	2.1	15	100	0	64	21	18	53	6	1.67
47439753--47439939	48	3.9	48	92	0	304	25	19	25	29	1.98
47443876--47443946	28	2.5	28	81	0	79	22	12	30	33	1.91
47447965--47448140	46	3.8	45	79	10	203	21	20	28	29	1.98
47447962--47448132	93	1.8	93	92	2	290	21	21	29	28	1.98
47451822--47451881	30	2.0	30	100	0	120	53	10	13	23	1.69
47452397--47452527	48	2.7	49	81	1	165	25	19	30	24	1.98
47452387--47452707	48	6.8	48	69	15	154	27	18	26	28	1.98
47452542--47452746	90	2.3	90	82	3	234	28	18	24	28	1.98
47464556--47464691	29	4.7	29	80	6	134	27	30	14	27	1.95
47464557--47464690	59	2.3	58	83	3	162	27	30	14	26	1.95
47476485--47476654	40	4.2	40	85	3	225	21	28	24	25	1.99
47484580--47484749	40	4.2	40	85	3	225	21	28	24	25	1.99
47493832--47493934	40	2.4	40	79	9	107	24	14	26	34	1.94
47493918--47493985	28	2.4	28	85	0	91	26	10	30	32	1.90
47500887--47501103	40	5.5	40	92	2	332	24	27	23	24	2.00
47500920--47501107	40	4.7	40	94	1	333	25	27	22	23	2.00
47506213--47506400	29	6.5	29	84	4	229	26	30	16	27	1.97
47512330--47512430	39	2.5	40	85	1	132	30	22	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47512330--47512480	40	3.8	40	84	4	180	28	22	25	23	1.99
47512326--47512497	40	4.4	38	77	10	161	29	21	26	23	1.99
47515122--47515271	38	3.9	38	79	8	153	23	25	22	28	1.99
47523114--47523282	40	4.2	40	80	4	173	23	26	21	28	1.99
47530535--47530718	40	4.6	40	85	6	216	25	21	27	25	2.00
47530534--47530741	79	2.6	79	78	12	230	26	21	26	25	1.99
47537484--47537650	43	3.9	43	79	7	178	26	20	26	25	1.99
47538969--47539027	17	3.4	17	77	11	57	79	1	15	3	0.94
47538969--47539016	20	2.4	18	78	18	51	81	2	14	2	0.88
47538971--47539025	23	2.3	23	82	11	67	78	1	16	3	0.98
47538983--47539039	17	3.2	18	78	16	64	75	0	21	3	0.95
47538977--47539039	18	3.5	17	77	16	65	74	1	20	3	1.04
47541510--47541553	22	2.0	22	100	0	88	36	18	13	31	1.90
47545262--47545519	94	2.8	93	77	6	220	27	18	28	25	1.98
47552728--47553086	47	7.7	46	73	13	243	26	20	30	23	1.98
47552732--47553045	93	3.4	94	80	9	335	26	20	30	23	1.98
47553854--47553972	55	2.2	54	83	5	150	21	26	30	22	1.99
47553869--47553984	55	2.1	55	80	3	126	19	28	32	18	1.96
47556129--47556294	77	2.1	77	89	1	251	22	27	19	31	1.98
47556129--47556294	39	4.3	39	91	1	253	22	27	19	31	1.98
47558173--47558205	17	1.9	17	88	11	50	54	9	3	33	1.47
47564149--47564315	39	4.3	39	89	0	262	21	27	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47566192--47566224	17	1.9	17	88	11	50	54	9	3	33	1.47
47566853--47566882	14	2.1	14	93	0	51	16	0	36	46	1.47
47568763--47568865	29	3.6	29	92	2	154	26	32	15	26	1.96
47576841--47576914	29	2.6	29	86	4	96	27	32	14	25	1.95
47578763--47578801	20	2.0	20	84	0	51	23	28	15	33	1.95
47584951--47585017	32	2.1	32	88	2	100	19	29	31	19	1.96
47586728--47586804	28	2.8	28	77	0	91	28	31	12	27	1.93
47586802--47586848	2	23.5	2	100	0	94	51	0	0	48	1.00
47586847--47586922	40	1.9	40	86	10	111	34	28	17	19	1.94
47588127--47588157	15	2.1	15	100	0	62	32	12	0	54	1.38
47590157--47590197	20	2.0	20	95	0	73	34	17	7	41	1.77
47592116--47592288	46	3.7	46	79	10	208	23	20	26	29	1.99
47592113--47592283	93	1.8	93	93	0	297	22	21	27	28	1.99
47592513--47592550	19	2.0	20	85	15	53	36	0	23	39	1.55
47599123--47599294	46	3.7	46	79	11	199	22	20	27	29	1.98
47599120--47599289	93	1.8	92	92	1	286	21	20	28	28	1.98
47599519--47599556	19	2.0	20	85	15	53	36	0	23	39	1.55
47600613--47600785	55	3.2	54	78	2	204	21	23	18	36	1.95
47611948--47612022	33	2.2	36	90	7	120	30	9	20	40	1.84
47612581--47612721	57	2.4	58	79	1	158	31	17	21	28	1.96
47614274--47614444	93	1.8	93	89	0	270	28	28	20	22	1.99
47614265--47614440	46	3.8	46	74	15	173	29	27	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47616482--47616519	16	2.4	16	95	4	69	36	13	7	42	1.73
47616967--47617023	22	2.6	22	97	0	105	17	35	29	17	1.93
47619663--47619714	27	2.0	26	92	3	86	36	23	25	15	1.93
47630696--47630852	43	3.7	43	80	10	178	24	17	25	32	1.97
47634874--47635057	40	4.6	40	81	2	172	28	22	26	22	1.99
47634914--47635102	80	2.4	80	77	5	184	24	22	29	23	1.99
47642927--47643107	39	4.6	39	82	4	168	28	22	27	22	1.99
47642965--47643107	40	3.7	38	84	5	153	26	22	27	23	1.99
47647001--47647053	25	2.0	26	85	7	72	30	22	16	30	1.96
47647094--47647132	10	3.8	10	93	6	69	33	17	17	30	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318