genome.fa.s3.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  107  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34550639--34550794	82	1.9	81	85	3	215	28	28	16	26	1.97
34554346--34554599	68	3.9	64	76	10	212	29	16	28	24	1.97
34556130--34556244	55	2.1	56	83	8	146	34	21	24	19	1.96
34556155--34556244	27	3.2	27	85	7	119	32	23	24	20	1.98
34556350--34556442	28	3.3	28	89	0	141	32	6	26	34	1.82
34559227--34559491	47	5.6	47	92	1	404	29	29	8	32	1.86
34559227--34559491	49	5.6	49	92	3	411	29	29	8	32	1.86
34562897--34563257	40	9.1	40	86	0	483	25	26	22	25	2.00
34562897--34563257	120	3.0	120	88	0	537	25	26	22	25	2.00
34563310--34563384	38	2.0	38	84	5	98	25	26	17	30	1.97
34565581--34565633	22	2.4	22	93	0	88	24	32	15	28	1.95
34565603--34565843	49	5.0	49	97	2	445	30	28	8	32	1.86
34565508--34565729	118	1.9	116	88	1	336	27	30	10	31	1.90
34570370--34570511	40	3.6	40	93	2	234	25	27	23	23	2.00
34576833--34576879	21	2.2	21	100	0	94	31	34	10	23	1.89
34578396--34578537	40	3.6	40	93	2	234	25	27	23	23	2.00
34582911--34583015	56	1.9	56	84	5	142	35	20	24	20	1.96
34582936--34583015	27	2.9	27	88	5	115	32	21	25	21	1.98
34583131--34583251	28	4.3	28	97	0	224	31	7	26	34	1.84
34591604--34591862	40	6.5	40	88	4	330	25	28	23	22	2.00
34599754--34600009	40	6.5	40	90	3	351	25	28	23	22	1.99
34599754--34600009	79	3.2	80	88	4	351	25	28	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34599788--34600009	119	1.9	119	91	1	365	26	28	23	21	1.99
34607419--34607503	43	2.0	43	83	4	109	27	18	27	27	1.98
34620435--34620608	49	3.5	48	83	4	204	29	28	16	25	1.97
34620435--34620616	99	1.8	99	90	0	292	29	28	17	25	1.97
34623332--34623368	15	2.5	15	95	0	65	56	13	13	16	1.67
34626458--34626687	49	4.6	49	85	3	316	28	27	19	24	1.99
34628738--34628776	16	2.4	16	87	8	53	48	0	10	41	1.37
34629540--34629697	40	4.0	40	88	0	226	15	28	18	36	1.92
34629674--34629721	24	2.0	24	91	0	78	8	31	18	41	1.80
34629636--34629761	64	2.0	64	93	0	216	13	28	19	38	1.89
34629698--34629795	40	2.5	40	83	3	126	15	29	18	36	1.91
34629596--34629789	104	1.9	104	86	2	282	14	28	19	38	1.90
34636049--34636108	27	2.3	26	82	2	66	35	18	23	23	1.96
34640456--34640489	18	1.9	18	88	5	52	14	17	11	55	1.68
34642446--34642505	27	2.3	26	85	2	75	35	20	23	21	1.96
34645343--34645371	12	2.3	13	94	5	51	65	6	6	20	1.40
34647440--34647475	16	2.2	16	95	0	63	22	2	38	36	1.69
34654078--34654171	38	2.4	38	84	7	109	37	9	9	43	1.70
34654156--34654238	39	2.1	38	84	4	103	30	10	12	46	1.75
34656448--34656655	55	3.9	54	82	6	233	34	17	25	22	1.95
34657998--34658047	21	2.3	21	86	6	64	62	0	2	36	1.07
34658030--34658085	22	2.5	22	83	13	71	60	0	3	35	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34661134--34661354	40	5.6	40	92	2	349	23	21	26	28	1.99
34666879--34667211	47	7.4	47	85	8	424	33	8	30	27	1.86
34667074--34667146	36	2.0	36	91	0	119	36	10	30	21	1.88
34667032--34667192	83	2.0	80	86	3	223	34	9	29	25	1.88
34669054--34669228	40	4.4	40	90	0	287	20	21	30	26	1.98
34672937--34673413	47	10.4	47	87	4	643	33	8	29	28	1.87
34673276--34673348	36	2.0	36	94	0	128	35	10	31	21	1.88
34673231--34673403	83	2.1	84	86	2	240	35	9	30	25	1.87
34678183--34678225	21	2.0	21	95	0	77	46	13	13	25	1.81
34681391--34681519	50	2.6	50	83	8	165	25	30	18	25	1.98
34681387--34681653	49	5.6	48	76	10	193	25	29	18	26	1.98
34681485--34681653	46	3.7	46	80	7	161	24	30	18	27	1.98
34686019--34686239	40	5.6	40	89	1	320	25	22	25	26	2.00
34690128--34690346	117	1.9	118	83	6	293	25	27	21	25	1.99
34690126--34690348	40	5.7	40	84	8	278	25	27	21	24	1.99
34703337--34703400	31	2.1	31	85	5	85	23	18	18	39	1.93
34703608--34703687	24	3.3	23	87	6	106	30	25	17	27	1.97
34703739--34703777	20	2.0	20	100	0	78	30	20	12	35	1.90
34703740--34703784	20	2.2	20	92	0	72	31	22	13	33	1.92
34708563--34708745	40	4.6	41	80	11	211	24	27	22	25	2.00
34708563--34708745	79	2.3	80	82	9	214	24	27	22	25	2.00
34715975--34716159	79	2.3	82	83	7	229	24	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34715956--34716159	40	5.1	40	81	8	229	24	27	22	25	2.00
34719128--34719287	42	3.8	42	79	3	162	25	24	15	34	1.95
34726108--34726328	40	5.6	41	85	8	298	24	22	26	26	2.00
34726556--34726597	22	1.9	22	85	9	59	33	9	14	42	1.78
34734369--34734589	40	5.6	41	84	8	289	24	22	25	26	2.00
34739944--34740039	38	2.5	39	86	3	131	33	11	11	43	1.77
34746691--34746817	65	2.0	65	100	0	254	43	17	11	28	1.83
34748343--34748444	29	3.6	29	84	6	127	25	29	17	27	1.98
34751743--34751777	18	2.0	18	88	5	54	28	14	20	37	1.91
34752844--34752958	29	4.0	29	85	6	146	29	28	16	25	1.97
34757390--34757475	28	3.0	28	84	3	109	26	30	15	27	1.96
34757685--34757720	16	2.2	16	95	0	63	13	25	13	47	1.80
34760015--34760066	25	2.1	25	100	0	104	25	15	15	44	1.85
34766631--34766664	17	1.9	18	88	5	52	50	5	5	38	1.51
34767253--34767290	17	2.2	17	90	0	58	42	2	0	55	1.14
34783873--34783972	50	2.0	50	98	0	191	40	9	18	33	1.81
34784832--34784885	27	2.0	27	100	0	108	48	3	18	29	1.65
34788786--34788846	23	2.7	22	77	10	61	19	22	18	39	1.92
34795602--34795657	27	2.2	25	75	12	58	41	14	16	28	1.87
34795611--34795664	27	2.0	28	88	3	83	42	11	14	31	1.81
34810378--34810441	27	2.4	27	92	2	103	51	6	3	39	1.43
34810427--34810459	17	1.9	17	93	0	57	51	12	6	30	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34811017--34811097	40	2.0	41	86	9	114	38	22	27	12	1.90
34811025--34811150	39	3.2	39	78	11	91	38	19	26	15	1.91
34811756--34811833	41	1.9	41	84	5	104	16	39	23	20	1.92
34816629--34816779	40	3.8	40	91	1	216	29	27	21	22	1.99
34823335--34823518	84	2.2	85	77	4	194	32	25	13	28	1.93
34823335--34823520	42	4.4	42	76	6	162	32	25	12	28	1.93
34838314--34838423	6	17.8	6	73	15	82	49	14	16	20	1.80
34838314--34838423	31	3.5	31	91	0	157	49	14	16	20	1.80
34838832--34839056	27	8.3	27	81	5	206	24	18	18	38	1.93
34838833--34839056	54	4.1	54	81	3	236	25	18	17	38	1.93
34838831--34839046	81	2.7	81	90	1	326	25	18	18	37	1.93
34839099--34839541	27	16.4	26	79	6	337	31	8	20	40	1.81
34839077--34839541	54	8.6	53	85	4	511	31	8	20	39	1.82
34839077--34839533	81	5.6	79	81	5	423	31	8	20	39	1.83
34839147--34839541	27	14.6	27	85	0	511	31	8	20	40	1.82
34839147--34839541	54	7.3	54	89	0	583	31	8	20	40	1.82
34840864--34840909	23	2.0	23	95	0	83	15	17	19	47	1.82
34844849--34844926	40	2.0	40	86	0	111	30	24	17	26	1.97
34844860--34845166	114	2.7	114	83	2	368	33	20	17	28	1.96
34845209--34845258	21	2.3	21	82	3	64	16	2	28	54	1.53
34845729--34845772	14	3.1	14	90	0	70	15	0	38	45	1.47
34845737--34845772	7	5.1	7	93	0	63	13	0	41	44	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34845704--34845782	28	2.8	28	75	7	88	18	0	39	41	1.51
34845737--34845778	21	2.0	21	86	4	59	14	0	45	40	1.45
34845808--34845881	21	3.5	21	75	0	58	28	2	21	47	1.65
34845890--34845943	21	2.6	21	85	5	65	12	0	33	53	1.39
34845898--34845950	21	2.5	21	84	0	70	9	0	30	60	1.28
34847720--34847748	3	9.7	3	100	0	58	0	31	0	68	0.89
34850759--34851082	43	7.6	44	77	8	262	25	15	27	31	1.96
34850759--34851082	85	3.8	84	78	6	305	25	15	27	31	1.96
34850759--34851082	128	2.6	127	80	5	361	25	15	27	31	1.96
34855008--34855077	37	1.9	35	83	11	88	41	1	2	54	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325