genome.fa.s3.2.7.7.80.10.50.1000.222.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  222  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72403200--72403385	41	4.6	41	87	3	243	25	24	25	24	2.00
72403202--72403355	81	1.9	82	87	4	231	24	24	24	25	2.00
72404783--72405040	40	6.5	40	91	1	394	25	27	22	24	2.00
72415895--72415928	16	2.1	16	100	0	68	32	17	0	50	1.47
72429033--72429064	15	2.1	15	100	0	64	31	6	18	43	1.75
72430757--72430818	31	2.0	31	100	0	124	51	22	3	22	1.62
72436102--72436288	79	2.4	79	93	3	315	24	22	27	25	2.00
72436102--72436311	79	2.7	79	88	8	313	25	22	27	25	2.00
72436102--72436288	39	4.7	40	90	5	299	24	22	27	25	2.00
72441960--72442096	41	3.3	41	86	0	193	23	29	13	33	1.92
72443720--72443769	22	2.2	22	82	10	57	26	2	22	50	1.60
72447515--72447582	34	2.0	34	100	0	136	29	5	17	47	1.71
72450153--72450185	11	3.3	10	88	12	50	57	0	9	33	1.30
72452274--72452412	27	5.2	26	88	6	188	36	23	24	15	1.94
72453354--72453412	25	2.4	24	86	5	82	23	38	3	33	1.72
72459703--72459814	27	4.2	26	85	7	143	37	23	23	16	1.93
72459703--72459814	54	2.1	54	91	3	181	37	23	23	16	1.93
72461124--72461182	25	2.4	24	88	5	91	22	40	3	33	1.70
72461126--72461189	25	2.6	25	87	2	76	20	43	3	32	1.67
72464130--72464296	43	3.9	42	75	8	149	32	23	16	26	1.96
72464454--72464510	28	2.0	28	100	0	114	35	14	7	43	1.72
72465407--72465431	13	1.9	13	100	0	50	48	12	0	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72465644--72465674	13	2.5	13	94	5	55	0	22	0	77	0.77
72468715--72468768	26	2.1	26	100	0	108	37	20	3	38	1.70
72469155--72469232	26	3.0	26	88	0	120	41	29	11	17	1.85
72470525--72470867	41	8.3	41	87	2	456	19	18	23	37	1.94
72474103--72474365	40	6.6	40	86	3	307	25	20	27	26	1.99
72474142--72474400	80	3.3	80	83	5	242	26	20	27	25	1.99
72476447--72476484	20	1.9	20	88	0	58	44	5	18	31	1.72
72480508--72480851	41	8.3	41	89	3	467	19	19	23	37	1.94
72480508--72480830	124	2.6	124	87	1	461	19	19	23	37	1.94
72482385--72482440	26	2.2	26	93	0	94	35	23	7	33	1.82
72487455--72487544	27	3.4	26	82	10	110	41	23	23	12	1.88
72487455--72487565	54	2.1	54	86	8	156	38	23	23	14	1.91
72487455--72487565	27	4.2	26	80	12	109	38	23	23	14	1.91
72488465--72488535	24	3.0	24	93	0	115	23	38	1	36	1.64
72488442--72488535	48	1.9	48	81	10	111	22	37	4	36	1.74
72492889--72492923	18	1.9	19	88	11	56	17	40	11	31	1.85
72493848--72493882	10	3.4	10	84	7	52	54	8	8	28	1.60
72494937--72495048	27	4.1	27	82	7	129	37	22	23	16	1.94
72494937--72495048	54	2.1	54	84	3	145	37	22	23	16	1.94
72496393--72496463	24	3.0	24	91	0	106	23	40	1	33	1.64
72496404--72496467	24	2.7	24	95	0	110	25	43	0	31	1.55
72497968--72498105	27	5.1	27	80	11	167	34	22	23	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72497968--72498108	54	2.6	54	92	2	230	34	22	24	18	1.96
72498494--72498523	8	3.8	8	90	0	51	3	26	26	43	1.70
72499704--72499785	26	3.2	26	98	0	155	35	25	7	31	1.84
72504064--72504263	27	7.4	27	90	1	258	27	13	21	38	1.90
72504598--72504656	19	3.2	19	82	4	75	23	25	20	30	1.98
72508872--72509057	27	6.9	27	82	6	166	39	16	10	33	1.82
72508958--72509071	54	2.1	54	86	3	158	39	15	14	29	1.88
72520603--72520657	26	2.1	26	100	0	110	41	32	3	21	1.71
72523121--72523424	41	7.3	41	86	4	414	37	23	18	20	1.94
72523121--72523424	84	3.6	84	89	3	447	37	23	18	20	1.94
72523121--72523404	125	2.3	126	86	6	391	36	23	18	21	1.94
72534427--72534460	14	2.4	14	100	0	68	32	11	26	29	1.92
72537123--72537574	27	16.7	27	83	2	505	39	21	8	30	1.84
72537595--72537745	27	5.6	27	85	0	185	33	17	23	25	1.96
72542536--72542692	40	3.9	40	96	1	280	22	22	28	26	1.99
72549967--72550184	40	5.5	40	88	1	305	24	22	26	26	2.00
72568935--72569150	40	5.4	40	87	2	285	26	28	21	23	1.99
72577113--72577330	40	5.5	40	87	2	280	26	28	22	22	1.99
72589465--72589517	26	2.1	26	86	10	74	37	11	0	50	1.38
72589845--72589873	8	3.6	8	100	0	58	37	24	0	37	1.56
72602874--72602933	27	2.3	26	82	2	66	21	25	18	35	1.96
72612022--72612432	174	2.3	176	85	4	571	30	20	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72630527--72630702	46	3.8	46	77	4	192	22	20	28	28	1.98
72630523--72630694	93	1.8	93	91	0	281	22	20	29	27	1.99
72637679--72637718	19	2.1	19	100	0	80	25	5	20	50	1.68
72639386--72639441	29	2.0	28	85	3	76	26	19	33	19	1.96
72639958--72640114	43	3.7	43	80	12	171	26	19	24	29	1.99
72640865--72640909	24	1.9	23	82	13	56	31	4	24	40	1.75
72642482--72642508	14	1.9	14	100	0	54	59	11	7	22	1.56
72642869--72642895	13	2.1	13	100	0	54	14	37	33	14	1.88
72645975--72646003	15	1.9	15	100	0	58	10	6	20	62	1.50
72647150--72647223	34	2.2	34	90	0	112	33	28	12	25	1.92
72647379--72647647	31	8.5	32	82	9	306	26	27	16	28	1.97
72647372--72647652	62	4.4	63	86	6	356	26	26	17	29	1.97
72647640--72647753	33	3.5	33	75	4	106	23	25	13	37	1.91
72647729--72647809	32	2.5	32	79	16	87	20	22	12	44	1.85
72656110--72656172	26	2.4	26	89	0	90	36	28	20	14	1.92
72664421--72664780	47	7.7	46	74	13	231	27	20	29	23	1.99
72664424--72664780	94	3.8	92	81	9	395	27	19	29	23	1.98
72664421--72664780	141	2.6	141	77	9	371	27	20	29	23	1.99
72666583--72666651	34	2.0	34	91	0	111	36	15	8	39	1.79
72670839--72670915	27	2.8	26	86	3	91	24	18	20	36	1.95
72670882--72671168	27	10.7	27	83	1	326	29	10	21	38	1.86
72670937--72671169	107	2.2	108	87	0	324	29	10	21	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72671485--72671577	28	3.3	28	84	0	123	26	33	15	24	1.95
72675061--72675091	16	1.9	16	93	0	53	35	3	3	58	1.31
72677239--72677263	12	2.1	12	100	0	50	40	36	8	16	1.77
72678643--72678697	22	2.5	21	82	8	74	43	12	0	43	1.42
72689498--72689742	44	5.6	42	72	13	165	36	20	22	21	1.95
72689449--72689611	88	1.9	88	84	7	224	35	20	23	20	1.96
72689498--72689804	131	2.3	132	84	4	383	36	19	21	22	1.95
72689592--72689780	87	2.2	87	82	7	215	35	22	21	20	1.96
72690326--72690364	11	3.5	11	93	6	62	53	33	0	12	1.39
72690369--72690393	12	2.1	12	100	0	50	40	36	8	16	1.77
72690775--72690822	23	2.0	22	92	4	60	39	20	2	37	1.65
72690836--72690865	4	7.8	4	92	7	53	73	0	0	26	0.84
72691775--72691829	22	2.5	21	82	8	74	43	12	0	43	1.42
72693756--72693803	24	2.0	24	100	0	96	54	8	12	25	1.65
72703105--72703362	86	3.0	86	95	0	464	31	14	8	45	1.75
72705915--72706278	69	5.3	69	85	0	458	21	20	22	35	1.96
72707815--72708056	69	3.5	69	75	3	193	22	16	22	37	1.94
72713656--72713770	55	2.1	56	80	8	128	34	21	24	19	1.96
72713681--72713770	27	3.2	27	79	7	92	32	23	24	20	1.98
72713876--72713940	28	2.3	28	91	0	103	32	7	27	32	1.85
72715008--72715040	12	2.6	13	85	9	50	45	0	45	9	1.35
72718287--72718440	42	3.6	42	82	3	175	31	16	24	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72724753--72724908	42	3.7	42	84	5	199	30	16	25	28	1.96
72724754--72724910	85	1.9	84	85	6	219	29	15	25	29	1.96
72736046--72736097	25	2.1	25	92	0	86	26	38	13	21	1.90
72741515--72741587	28	2.6	28	87	8	103	28	31	13	26	1.94
72749496--72749594	28	3.5	29	81	12	107	29	28	15	27	1.96
72751663--72751696	6	5.7	6	96	0	59	55	0	26	17	1.42
72751843--72751917	26	2.9	26	86	2	107	40	12	20	28	1.87
72759978--72760099	47	2.6	47	96	0	217	36	13	24	24	1.92
72760755--72760792	19	2.0	19	100	0	76	10	21	21	47	1.80
72762971--72763030	29	2.0	30	96	3	113	18	16	13	51	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325