genome.fa.s3.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  128  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40897811--40897866	22	2.5	22	85	5	69	35	8	16	39	1.80
40898872--40899276	217	1.9	217	94	0	711	35	17	20	26	1.95
40905147--40905277	40	3.3	40	78	0	127	25	16	23	34	1.95
40908103--40908163	30	2.0	30	83	0	77	31	22	8	37	1.84
40909734--40909794	30	2.0	30	83	0	77	31	22	8	37	1.84
40914945--40915127	79	2.3	81	83	7	223	25	27	22	24	2.00
40914944--40915127	40	4.6	40	82	8	223	25	27	22	24	2.00
40923717--40923915	50	3.9	50	80	2	200	25	15	28	31	1.96
40923717--40923936	51	4.3	50	78	5	183	25	15	26	31	1.96
40925453--40925482	13	2.3	13	100	0	60	20	0	33	46	1.51
40930078--40930254	83	2.1	83	97	0	336	24	15	31	28	1.95
40932661--40932730	27	2.6	27	95	2	113	31	28	12	27	1.93
40932661--40932758	28	3.5	28	90	2	135	31	28	13	26	1.94
40934969--40935137	46	3.7	46	78	13	193	29	27	20	23	1.98
40934974--40935144	93	1.8	93	92	0	288	28	27	21	22	1.99
40939766--40939983	40	5.5	40	90	2	307	25	28	23	22	1.99
40943776--40943948	46	3.7	46	75	13	174	30	26	20	23	1.98
40945908--40946015	42	2.6	42	77	2	110	32	25	13	28	1.94
40950465--40951040	47	12.1	47	88	7	810	32	8	29	29	1.87
40950465--40951040	49	12.1	47	87	7	765	32	8	29	29	1.87
40951159--40951237	37	2.1	37	90	0	122	24	18	31	25	1.98
40951790--40951817	14	2.0	14	100	0	56	42	21	21	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40953152--40953225	29	2.6	29	89	4	105	25	16	32	25	1.96
40953536--40953768	40	5.9	40	81	7	176	24	22	28	24	1.99
40957603--40958183	47	12.1	47	92	3	903	32	9	29	28	1.88
40957603--40958183	194	3.0	190	92	3	957	32	9	29	28	1.88
40957603--40958128	245	2.2	240	96	2	975	32	8	28	29	1.88
40958302--40958380	37	2.1	37	85	0	113	24	17	32	25	1.97
40962350--40962431	32	2.6	30	83	11	85	41	3	4	50	1.41
40962838--40962865	3	9.3	3	100	0	56	35	0	0	64	0.94
40962951--40962987	17	2.2	17	100	0	74	64	10	18	5	1.43
40971401--40971485	44	1.9	44	87	0	125	29	12	20	37	1.90
40973234--40973315	32	2.6	30	83	11	85	41	3	4	50	1.41
40983560--40983656	50	1.9	50	93	0	167	36	12	18	32	1.88
40987689--40987720	13	2.5	13	94	0	55	9	18	37	34	1.83
40993625--40993688	27	2.3	26	76	10	65	28	25	21	25	1.99
40993839--40993903	27	2.4	27	79	2	78	40	21	21	16	1.92
40994039--40994238	27	7.4	27	80	3	172	28	21	17	34	1.95
40994040--40994238	54	3.7	54	82	1	229	28	21	16	34	1.95
40996811--40996914	44	2.4	45	77	17	114	23	19	25	32	1.97
40997927--40997967	21	2.0	21	95	0	73	19	19	48	12	1.80
41005865--41005963	49	2.0	49	100	0	198	36	17	10	36	1.83
41010958--41011010	20	2.5	22	81	6	65	26	20	16	35	1.94
41014326--41014407	30	2.8	29	78	10	103	21	24	13	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41023542--41023581	20	2.0	21	85	5	55	42	0	20	37	1.52
41033354--41033577	110	2.0	110	79	3	236	26	26	14	32	1.95
41033610--41033654	20	2.2	20	96	0	81	15	28	28	26	1.96
41043711--41043754	22	2.0	22	95	0	79	25	36	4	34	1.76
41046162--41046205	22	2.0	22	95	0	79	25	36	4	34	1.76
41048618--41048661	22	2.0	22	95	0	79	25	36	4	34	1.76
41051075--41051118	22	2.0	22	95	0	79	25	36	4	34	1.76
41057904--41057945	16	2.5	17	84	11	59	21	16	0	61	1.34
41061705--41061775	36	2.0	36	88	0	106	47	25	14	12	1.79
41066124--41066379	40	6.4	40	88	2	322	25	28	22	23	1.99
41069331--41069382	18	2.9	18	72	11	61	28	17	11	42	1.84
41071333--41071505	46	3.7	46	80	13	219	21	21	28	28	1.98
41071330--41071500	93	1.8	93	96	0	315	21	21	29	28	1.98
41078894--41079066	46	3.7	46	80	13	219	21	21	28	28	1.98
41078891--41079061	93	1.8	93	96	0	315	21	21	29	28	1.98
41082548--41082601	21	2.7	20	83	8	74	9	20	22	48	1.78
41087076--41087255	25	7.3	25	68	13	95	33	21	24	20	1.97
41087165--41087269	25	4.3	23	69	15	68	31	23	25	19	1.98
41091366--41091396	16	1.9	16	93	0	53	35	22	0	41	1.54
41091363--41091402	20	2.0	20	85	0	53	37	22	0	40	1.54
41091635--41091771	53	2.5	55	82	4	172	22	24	18	33	1.97
41091635--41091835	108	1.8	110	83	2	271	24	23	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41100968--41100992	13	1.9	13	100	0	50	32	4	24	40	1.73
41105472--41105511	20	2.0	21	85	5	55	42	0	20	37	1.52
41106349--41106476	49	2.6	48	79	4	132	29	19	26	24	1.98
41117502--41117538	18	2.1	18	100	0	74	51	10	10	27	1.70
41118605--41118646	10	4.1	10	87	6	57	2	19	14	64	1.39
41118605--41118639	11	3.3	11	92	4	54	0	17	14	68	1.21
41118605--41118646	21	2.0	21	90	0	66	2	19	14	64	1.39
41119362--41119587	48	4.8	48	78	8	223	27	20	23	28	1.99
41131322--41131365	19	2.5	17	78	10	52	34	0	2	63	1.07
41131368--41131407	21	1.9	21	84	0	53	45	5	0	50	1.23
41147567--41147604	20	1.9	20	89	10	60	39	2	7	50	1.46
41153477--41153509	15	2.3	15	89	5	50	27	6	3	63	1.32
41155380--41155617	87	2.7	87	87	3	329	37	18	14	29	1.91
41157939--41157971	6	5.5	6	96	0	57	54	0	30	15	1.41
41158268--41158296	3	9.7	3	100	0	58	65	0	34	0	0.93
41160910--41160943	12	3.1	11	91	8	52	29	2	0	67	1.05
41160791--41161142	177	2.0	176	94	0	623	26	11	15	46	1.80
41168792--41168820	14	2.0	15	93	6	51	34	6	24	34	1.82
41173724--41173775	23	2.3	22	75	21	54	9	23	1	65	1.32
41177205--41177334	33	3.9	33	95	0	233	20	7	41	30	1.80
41179654--41179694	19	2.2	19	100	0	82	39	14	26	19	1.90
41186366--41186440	23	3.3	23	81	3	80	21	26	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41191871--41191924	26	2.1	26	92	0	90	44	14	14	25	1.84
41192288--41192351	28	2.3	28	89	2	94	29	20	18	31	1.96
41193484--41193523	10	4.1	10	93	6	73	30	20	0	50	1.49
41193484--41193523	19	2.0	20	95	4	73	30	20	0	50	1.49
41195644--41195687	20	2.1	21	87	4	63	43	2	36	18	1.63
41204270--41204318	23	2.1	23	96	0	89	46	10	8	34	1.67
41207998--41208178	40	4.6	40	87	3	233	25	22	25	26	2.00
41211669--41211791	43	2.9	42	78	8	131	30	24	14	30	1.95
41219043--41219200	43	3.7	43	83	10	198	22	19	29	29	1.98
41231152--41231295	51	2.8	51	94	0	252	31	25	11	31	1.91
41231319--41231410	28	3.4	27	84	15	129	27	25	14	33	1.94
41232710--41232973	47	5.7	46	74	12	186	29	19	28	22	1.98
41232710--41232973	140	1.9	141	81	7	322	29	19	28	22	1.98
41238978--41239200	40	5.7	39	88	6	256	26	26	21	25	2.00
41238959--41239200	79	3.1	78	82	9	285	25	26	21	25	2.00
41238978--41239200	117	1.9	119	82	7	285	26	26	21	25	2.00
41246967--41247189	40	5.7	39	88	6	256	26	26	21	25	2.00
41246948--41247189	79	3.1	78	82	9	285	25	26	21	25	2.00
41246967--41247189	117	1.9	119	82	7	285	26	26	21	25	2.00
41250966--41252485	760	2.0	760	94	1	2670	35	23	12	28	1.92
41254607--41254689	43	1.9	43	82	4	105	26	14	24	34	1.94
41258174--41258221	20	2.3	21	82	3	62	35	18	0	45	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41259089--41259172	39	2.1	40	88	2	125	38	17	19	25	1.93
41259258--41259605	126	2.8	126	91	1	536	29	16	19	33	1.94
41259535--41259681	40	3.7	38	74	10	107	30	23	16	29	1.96
41259896--41259943	15	3.3	15	77	16	55	20	0	31	47	1.50
41259893--41260002	22	5.1	22	76	8	84	23	0	33	42	1.54
41259896--41260026	7	18.3	7	72	7	66	21	0	33	45	1.52
41259932--41260053	22	5.7	21	75	4	100	20	0	36	42	1.52
41259911--41260030	36	3.4	35	75	7	107	20	0	34	45	1.52
41259910--41260053	7	20.1	7	72	13	80	20	0	36	43	1.53
41271237--41271285	17	3.0	16	75	16	55	24	16	20	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325