Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  14  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4321320--4321406
33
2.6
33
98
0
165
32
20
9
37
1.84
4322126--4322173
21
2.2
22
82
14
64
35
16
0
47
1.47
4323996--4324052
23
2.5
22
81
16
62
73
1
12
12
1.17
4326751--4326835
37
2.3
37
89
0
125
28
15
23
32
1.95
4326783--4326883
51
2.0
51
92
0
166
29
11
23
34
1.91
4328769--4328810
11
3.4
13
78
21
54
38
0
0
61
0.96
4328750--4328814
9
6.5
10
72
16
55
40
0
0
60
0.97
4328769--4328814
19
2.5
18
85
3
65
36
0
0
63
0.95
4329486--4329726
133
1.8
133
82
3
315
32
9
12
46
1.73
4337579--4337633
20
2.5
22
75
22
62
67
5
0
27
1.12
4337863--4337900
19
2.0
19
85
10
51
63
0
2
34
1.09
4340422--4340459
18
2.2
18
85
4
51
71
2
0
26
1.00
4341373--4341402
3
10.0
3
100
0
60
66
0
0
33
0.92
4343123--4343163
21
2.0
20
85
4
55
41
0
0
58
0.98
4346939--4346987
3
16.3
3
95
0
89
65
2
0
32
1.04
4348013--4348081
30
2.3
29
80
9
75
5
7
44
42
1.56
4348514--4348799
46
6.6
45
73
12
201
26
19
21
31
1.98
4348429--4348803
170
2.2
170
87
4
513
27
21
20
31
1.98
4350738--4350806
30
2.3
29
80
9
75
5
7
44
42
1.56
4352395--4352440
3
15.3
3
95
0
83
65
2
0
32
1.05
4353479--4353547
30
2.3
29
80
9
75
5
7
44
42
1.56
4354009--4354037
6
4.8
6
100
0
58
48
34
0
17
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4358923--4359099
87
2.0
87
98
0
345
34
16
9
39
1.81
4366657--4366689
16
2.1
16
100
0
66
60
12
27
0
1.32
4367511--4367560
26
1.9
26
100
0
100
48
20
8
24
1.76
4373982--4374015
18
1.9
17
94
5
59
44
0
0
55
0.99
4377019--4377049
2
15.5
2
93
0
53
3
48
0
48
1.17
4380919--4380994
38
2.0
38
100
0
152
42
21
7
28
1.81
4380919--4380976
18
3.1
18
66
9
53
39
22
8
29
1.84
4380931--4380990
18
3.2
18
68
9
57
45
16
8
30
1.77
4382392--4382439
21
2.3
21
85
0
60
35
25
14
25
1.94
4383314--4383376
15
3.8
16
74
22
51
47
0
0
52
1.00
4387102--4387134
11
2.9
12
86
13
52
66
0
0
33
0.92
4395429--4395463
6
5.8
6
100
0
70
31
0
0
68
0.90
4406997--4407214
40
5.5
40
93
1
359
25
28
22
23
1.99
4412166--4412217
26
2.0
27
85
11
72
17
0
13
69
1.19
4412343--4412402
24
2.5
25
73
10
63
65
0
5
30
1.14
4414587--4414622
19
1.9
18
88
5
54
5
11
11
72
1.28
4415054--4415119
20
3.3
20
80
0
78
13
15
12
59
1.62
4415095--4415152
24
2.5
24
86
8
75
8
10
10
70
1.34
4415327--4415369
20
2.2
20
91
0
68
20
23
11
44
1.84
4415337--4415382
20
2.3
20
88
3
67
21
17
8
52
1.71
4416893--4416935
20
2.2
20
100
0
86
25
13
13
46
1.81
4418869--4418903
16
2.1
17
89
10
54
65
5
25
2
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4421033--4421154
60
2.0
60
93
0
208
34
13
18
32
1.91
4424900--4424941
22
1.9
22
90
0
66
47
11
0
40
1.40
4428093--4428151
27
2.2
27
85
8
77
59
0
5
35
1.20
4428098--4428160
24
2.5
25
80
12
58
58
1
4
34
1.29
4428105--4428159
27
2.1
26
82
3
65
60
1
3
34
1.25
4428134--4428194
27
2.3
28
81
10
67
59
3
4
32
1.35
4429005--4429038
6
5.3
6
86
13
50
82
2
0
14
0.79
4429725--4429752
14
2.0
14
100
0
56
64
0
0
35
0.94
4439574--4439599
11
2.4
11
100
0
52
92
0
7
0
0.39
4440398--4440434
20
1.9
18
89
10
56
0
13
0
86
0.57
4444408--4444441
15
2.3
15
89
0
50
29
38
23
8
1.85
4447261--4447298
20
1.9
20
88
0
58
60
0
0
39
0.97
4451075--4451112
20
1.9
20
84
10
51
31
5
2
60
1.33
4479538--4479590
16
3.2
17
75
15
58
60
1
20
16
1.45
4483138--4483251
60
1.9
59
85
7
158
35
10
18
35
1.85
4485017--4485065
16
3.0
16
76
5
53
20
4
4
71
1.19
4492312--4492373
25
2.6
21
76
16
52
58
3
8
30
1.43
4492564--4492626
24
2.5
26
85
10
78
58
4
3
33
1.35
4492853--4492940
28
3.1
28
73
15
74
56
2
9
31
1.43
4495394--4495424
7
4.4
7
91
0
53
35
3
0
61
1.12
4500582--4501334
375
2.0
375
100
0
1506
30
15
20
34
1.93
4509302--4509356
27
2.0
27
86
6
76
47
7
7
38
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4512912--4513278
135
2.7
135
83
2
441
27
23
20
28
1.99
4513227--4513346
44
2.7
44
89
0
186
25
25
24
25
2.00
4521124--4521168
21
2.1
21
87
0
63
15
22
22
40
1.91
4528111--4528214
26
4.0
26
93
0
172
33
7
23
35
1.83
4534101--4534315
46
4.7
45
84
8
197
21
20
30
27
1.98
4537259--4537342
29
2.9
29
81
10
91
11
15
15
57
1.66
4537272--4537346
15
5.1
15
81
10
84
10
17
13
58
1.62
4539714--4539982
46
5.8
45
87
6
253
21
20
29
27
1.98
4539760--4539882
47
2.6
47
98
0
237
21
20
30
26
1.98
4541642--4541686
23
1.9
24
86
4
65
44
0
0
55
0.99
4552921--4553090
62
2.7
62
93
0
286
41
2
7
49
1.43
4556128--4556168
21
1.9
22
85
5
57
48
7
2
41
1.44
4559441--4559708
52
5.6
46
90
5
349
35
14
22
28
1.93
4559441--4559708
98
2.7
97
83
11
341
35
14
22
28
1.93
4559672--4559817
37
4.0
37
91
1
233
36
15
21
25
1.93
4564445--4564474
16
1.9
15
93
6
51
70
0
3
26
1.03
4569119--4569225
47
2.3
47
80
6
128
17
18
1
61
1.43
4569393--4569459
19
3.6
19
67
15
50
11
26
0
61
1.31
4572223--4572334
55
2.0
55
98
0
215
35
11
29
23
1.90
4579838--4579874
5
7.4
5
100
0
74
40
0
0
59
0.97
4580127--4580171
21
2.2
20
84
4
54
46
2
17
33
1.61
4588434--4588467
17
1.9
18
88
5
52
50
32
0
17
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4592574--4592611
3
13.0
3
94
5
69
68
0
0
31
0.90
4592885--4593054
3
56.7
3
73
13
118
64
5
3
25
1.32
4594411--4594521
47
2.4
47
83
6
145
34
23
17
25
1.96
4597279--4597421
62
2.3
62
88
0
205
25
25
23
25
2.00
4598001--4598042
15
2.9
14
85
7
57
76
0
21
2
0.90
4598009--4598042
7
4.7
7
85
7
50
79
0
17
2
0.86
4598686--4598733
18
2.7
18
81
9
62
54
0
4
41
1.20
4605892--4605924
16
2.0
17
88
5
50
36
0
0
63
0.95
4607858--4607917
32
1.9
32
82
3
77
41
10
8
40
1.69
4608709--4608765
9
6.6
8
75
15
51
31
1
0
66
1.02
4608775--4608831
21
2.8
21
81
5
64
29
8
0
61
1.26
4608880--4608960
29
2.8
28
80
10
83
33
1
4
60
1.26
4608880--4608961
20
4.2
20
75
13
66
32
1
4
60
1.25
4609603--4609640
14
2.7
15
88
8
53
31
2
0
65
1.06
4623294--4623337
7
6.3
7
97
0
70
43
29
9
18
1.80
4626181--4626230
25
2.1
25
85
7
68
42
0
0
58
0.98
4628635--4628697
18
3.3
20
71
13
60
57
4
1
36
1.30
4635445--4635491
16
2.9
16
78
9
51
38
14
14
31
1.87
4636842--4636897
25
2.2
25
79
17
62
71
0
14
14
1.15
4643828--4643854
3
9.0
3
100
0
54
66
0
33
0
0.92
4644133--4644170
17
2.2
17
90
9
60
28
0
2
68
1.03
4644747--4644779
17
1.9
17
88
11
50
42
0
0
57
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4651297--4651367
31
2.3
32
75
18
78
59
2
0
38
1.12
4653740--4653799
21
2.8
21
85
7
77
28
6
35
30
1.83
4655799--4655928
33
4.0
33
85
3
183
45
9
10
34
1.71
4655799--4655926
65
2.0
65
90
0
202
45
9
10
35
1.70
4657255--4657317
30
2.1
30
91
5
101
25
4
11
58
1.51
4659117--4659165
22
2.2
22
81
0
53
28
6
4
61
1.38
4660161--4660186
12
2.2
12
100
0
52
30
23
23
23
1.99
4664904--4664936
17
1.9
17
93
0
57
12
3
33
51
1.54
4665114--4665154
16
2.6
16
84
3
57
19
12
26
41
1.87
4668301--4668371
35
2.0
35
100
0
142
25
8
19
46
1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325