genome.fa.s3.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  149  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47888979--47889026	10	4.3	10	80	17	51	77	0	4	18	0.93
47888979--47889027	6	8.5	6	81	4	57	77	0	4	18	0.92
47888979--47889027	18	2.9	17	87	6	64	77	0	4	18	0.92
47888979--47889027	24	2.1	24	88	7	75	77	0	4	18	0.92
47903598--47903705	27	4.0	27	83	0	144	37	18	16	27	1.93
47903601--47903708	54	2.0	54	94	0	189	36	17	17	28	1.93
47903690--47903758	26	2.6	27	81	6	88	42	17	8	31	1.80
47903740--47904026	54	5.3	55	79	6	259	42	20	8	28	1.80
47903767--47903974	108	1.9	108	87	1	301	40	21	7	29	1.81
47903740--47904109	81	4.6	80	74	5	278	41	20	8	29	1.81
47903690--47904099	27	15.2	26	79	6	171	40	18	9	31	1.82
47904330--47904452	41	3.0	41	86	2	167	20	22	28	28	1.99
47905343--47905372	4	7.5	4	100	0	60	76	0	0	23	0.78
47907718--47907826	45	2.3	46	86	7	141	33	11	29	26	1.91
47910930--47910969	15	2.7	15	84	0	53	57	15	17	10	1.64
47920307--47920479	46	3.7	46	79	7	181	28	20	28	21	1.98
47937090--47937230	50	2.9	50	85	5	182	28	28	18	24	1.98
47937389--47937446	20	2.9	20	94	0	98	36	31	13	18	1.90
47939766--47939891	6	20.3	6	68	20	73	48	15	16	19	1.81
47939780--47939891	31	3.6	31	85	3	136	48	15	16	19	1.82
47940028--47940129	27	3.8	27	83	5	125	38	21	22	17	1.93
47940288--47940352	22	3.0	22	80	8	78	33	23	23	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47940797--47940973	27	6.6	27	86	1	239	23	19	20	36	1.95
47941012--47941299	27	10.7	27	77	9	106	30	9	20	40	1.83
47941005--47941352	81	4.3	81	80	3	272	31	9	20	39	1.84
47941093--47941359	54	4.9	54	92	0	399	32	8	19	39	1.82
47941066--47941352	27	10.6	27	83	0	342	31	8	19	40	1.81
47947219--47947243	13	1.9	13	100	0	50	16	24	40	20	1.91
47960734--47960786	26	2.0	27	81	7	63	47	13	7	32	1.70
47962711--47962947	50	4.7	50	80	3	242	24	18	25	31	1.97
47962711--47962947	101	2.4	99	83	5	289	24	18	25	31	1.97
47962711--47963095	151	2.7	147	79	13	439	23	18	26	30	1.98
47963842--47963872	16	1.9	16	100	0	62	54	25	6	12	1.62
47964955--47965009	24	2.3	23	87	3	83	47	16	21	14	1.82
47964956--47965007	16	3.3	16	75	2	52	50	15	23	11	1.76
47965115--47965168	19	2.9	19	88	2	83	24	18	40	16	1.90
47965249--47965350	29	3.6	29	85	1	134	26	16	29	27	1.97
47965249--47965359	58	1.9	57	85	5	152	26	16	29	27	1.97
47972483--47972616	50	2.6	51	86	2	180	22	14	28	34	1.94
47972479--47972649	50	3.4	50	81	3	164	22	16	27	33	1.95
47976111--47976252	49	2.9	48	88	3	212	29	19	24	26	1.98
47985677--47985749	21	3.7	20	75	12	78	43	9	27	19	1.81
47986706--47986806	52	1.9	52	87	0	148	23	15	28	31	1.96
47994281--47994316	18	1.9	19	94	5	65	47	27	2	22	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47994595--47994619	12	2.1	12	100	0	50	40	8	16	36	1.77
48004567--48004751	40	4.7	40	80	7	200	23	21	28	27	1.99
48011296--48011398	28	3.7	28	85	3	118	22	12	36	28	1.91
48014109--48014189	40	2.0	40	100	0	162	28	14	17	39	1.89
48015425--48015457	13	2.6	13	90	4	50	48	12	0	39	1.40
48018324--48018378	23	2.3	23	81	9	58	74	1	7	16	1.12
48018352--48018379	12	2.3	12	100	0	56	78	0	7	14	0.95
48030671--48030722	27	1.9	27	96	0	95	13	25	32	28	1.93
48030595--48030817	103	2.2	104	91	2	360	17	18	31	31	1.95
48030736--48030887	71	2.1	72	92	1	252	23	17	29	30	1.97
48039899--48040076	27	6.6	27	75	6	119	29	26	16	28	1.97
48039899--48040076	54	3.3	54	74	12	150	29	26	16	28	1.97
48047105--48047282	27	6.6	27	75	6	119	29	26	16	28	1.97
48047105--48047282	54	3.3	54	74	12	150	29	26	16	28	1.97
48056884--48057110	40	5.7	39	93	1	346	27	27	22	22	1.99
48066131--48067787	827	2.0	828	91	1	2685	34	20	10	34	1.86
48071081--48071189	28	3.9	28	86	1	146	23	14	34	26	1.94
48071488--48071559	36	2.0	36	89	5	110	44	16	6	31	1.74
48071524--48071638	27	4.3	27	78	8	108	39	20	11	28	1.87
48071629--48071717	27	3.3	27	85	0	106	38	19	15	26	1.92
48071544--48071696	81	1.9	81	80	8	177	36	20	14	28	1.92
48072177--48072202	11	2.4	11	100	0	52	26	0	19	53	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48074543--48074599	28	2.0	28	86	0	78	21	14	36	28	1.92
48074936--48075148	27	7.9	27	79	8	188	39	19	9	30	1.84
48074936--48075148	54	4.0	55	82	7	249	39	19	9	30	1.84
48075046--48075180	27	5.0	27	84	3	121	37	20	13	28	1.91
48074936--48075167	80	2.9	80	81	6	193	39	18	11	31	1.85
48081591--48081675	29	3.0	28	70	11	75	31	20	12	35	1.90
48085052--48085172	43	2.9	42	80	7	147	23	17	28	31	1.97
48088592--48088692	29	3.5	29	90	1	150	29	28	14	26	1.95
48096512--48096612	29	3.5	29	90	1	150	29	28	14	26	1.95
48099495--48099598	31	3.4	31	95	0	181	29	23	14	32	1.94
48099622--48099713	42	2.2	42	92	0	148	34	21	14	29	1.93
48099858--48099980	26	4.8	26	94	1	196	27	22	22	26	1.99
48100875--48101287	27	15.3	27	76	7	223	33	9	20	36	1.85
48101126--48101273	28	5.4	28	84	7	133	33	8	18	39	1.81
48101038--48101386	54	6.4	54	72	8	183	35	8	22	33	1.84
48101266--48101368	27	3.8	27	92	0	152	35	7	26	30	1.84
48109195--48109386	40	4.8	40	81	7	196	25	22	27	25	2.00
48109195--48109377	79	2.3	81	83	7	223	24	22	27	25	2.00
48109248--48109412	79	2.1	79	83	6	201	26	21	27	25	1.99
48112430--48112609	79	2.3	81	83	7	226	23	28	22	25	1.99
48112428--48112609	40	4.6	40	82	6	210	24	29	21	24	1.99
48114459--48114557	28	3.5	28	85	9	105	30	27	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48116684--48116803	56	2.1	56	98	0	231	21	24	9	45	1.81
48123340--48123522	79	2.3	81	83	7	223	24	22	27	25	2.00
48123341--48123524	40	4.6	40	82	9	207	23	22	28	25	1.99
48123393--48123547	79	2.0	79	83	7	199	25	20	27	26	1.99
48128914--48128940	9	3.0	9	100	0	54	22	0	22	55	1.44
48129948--48129994	15	3.2	15	81	6	60	55	8	0	36	1.31
48129952--48130001	15	3.4	15	80	2	57	48	12	0	40	1.40
48134661--48134710	24	2.1	24	96	0	91	30	18	12	40	1.86
48135023--48135120	48	2.0	49	96	2	180	42	24	5	27	1.75
48142567--48142610	24	1.9	23	90	9	72	36	18	11	34	1.86
48148651--48148826	46	3.8	46	74	12	180	21	22	28	27	1.99
48148649--48148819	93	1.8	93	91	0	279	22	22	28	26	1.99
48151290--48151319	15	2.1	15	93	6	53	36	26	6	30	1.82
48157000--48157360	182	2.0	181	97	0	686	37	22	7	32	1.82
48157755--48157784	15	2.1	15	93	6	53	36	26	6	30	1.82
48161233--48161258	13	2.0	13	100	0	52	38	0	15	46	1.46
48162322--48162437	42	2.7	42	81	1	151	30	11	24	34	1.90
48163639--48163703	32	2.0	32	96	0	121	41	7	15	35	1.76
48165196--48165333	40	3.5	39	86	6	172	24	23	28	23	2.00
48172325--48172502	40	4.5	40	87	3	236	23	23	29	24	1.99
48175604--48175711	25	4.4	24	85	6	112	26	23	21	28	1.99
48175617--48175710	25	3.8	25	88	6	131	26	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48176518--48176595	27	2.9	27	79	11	88	21	20	21	35	1.96
48176613--48176945	27	12.3	27	77	8	185	31	9	19	38	1.85
48176640--48176769	56	2.4	54	83	7	147	33	7	16	42	1.77
48176613--48176865	110	2.3	108	78	6	244	33	11	18	37	1.86
48176725--48176931	80	2.6	80	82	3	236	29	10	20	39	1.85
48176613--48176945	54	6.1	54	75	9	230	31	9	19	38	1.85
48176923--48177045	27	4.6	27	87	4	160	43	7	19	30	1.78
48176897--48177029	54	2.5	54	85	2	151	40	7	19	32	1.80
48179262--48179289	3	9.3	3	100	0	56	64	0	35	0	0.94
48181801--48181907	27	3.9	27	83	9	128	16	24	21	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325