genome.fa.s3.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  172  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55885016--55885061	24	1.9	24	82	8	58	19	2	47	30	1.61
55885074--55885128	18	3.1	18	76	7	60	18	16	14	50	1.77
55888958--55889002	15	2.9	15	83	6	63	57	15	20	6	1.60
55895617--55895656	18	2.2	18	86	0	53	57	17	5	20	1.58
55897918--55898105	27	7.0	27	85	2	216	39	19	13	27	1.89
55897929--55898105	81	2.2	81	86	2	239	40	19	12	28	1.87
55900674--55900772	28	3.5	29	85	9	116	28	14	28	29	1.95
55907948--55908177	49	4.7	49	76	7	207	30	25	18	26	1.98
55907997--55908175	99	1.8	99	86	2	261	30	24	18	26	1.98
55908424--55908477	27	2.0	27	85	0	72	38	14	5	40	1.70
55922160--55922291	40	3.3	40	80	9	146	28	25	21	24	1.99
55925879--55925910	16	2.0	16	100	0	64	37	6	25	31	1.81
55925832--55925957	63	2.0	63	93	3	207	34	7	27	30	1.84
55925895--55926243	47	7.3	47	91	2	518	32	8	29	28	1.87
55925895--55926243	97	3.7	96	90	2	542	32	8	29	28	1.87
55934593--55934769	40	4.4	40	85	4	234	25	27	22	23	2.00
55953724--55953767	19	2.3	19	88	7	63	47	0	15	36	1.46
55954820--55954907	28	3.1	28	95	0	149	18	12	37	31	1.88
55954904--55954954	14	3.7	14	68	5	50	21	7	27	43	1.80
55955205--55955704	27	18.4	27	81	6	510	39	19	10	31	1.84
55955199--55955730	80	6.5	80	81	7	520	39	19	10	31	1.85
55955441--55955700	88	3.0	89	79	15	287	40	18	8	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55955405--55955673	142	1.9	142	85	6	375	40	17	8	32	1.81
55955419--55955638	115	1.9	116	87	6	331	40	17	8	33	1.79
55955547--55955730	27	6.8	27	83	6	151	39	20	9	30	1.84
55955656--55955745	27	3.3	27	88	0	117	40	18	14	26	1.89
55958582--55958717	20	6.8	20	69	6	69	36	16	28	18	1.92
55958650--55958720	20	3.5	20	77	7	81	36	16	25	21	1.94
55958511--55958727	120	1.8	120	86	2	319	36	15	29	18	1.92
55958511--55958728	40	5.4	40	84	0	256	36	15	29	18	1.92
55960125--55960163	19	2.1	18	85	4	51	10	38	2	48	1.51
55964737--55964798	27	2.3	26	83	8	72	40	20	20	17	1.92
55965195--55965246	20	2.6	20	93	0	86	19	36	25	19	1.95
55965339--55965373	13	2.7	13	95	0	61	28	40	28	2	1.71
55966980--55967025	23	2.0	23	100	0	92	26	17	21	34	1.95
55969580--55969801	40	5.6	40	88	5	301	26	26	22	25	2.00
55969580--55969801	80	2.8	80	90	2	340	26	26	22	25	2.00
55973628--55973669	21	2.0	21	100	0	84	57	14	4	23	1.56
55974732--55974789	25	2.3	25	82	11	66	62	1	13	22	1.41
55974783--55974832	18	2.8	17	85	8	64	76	0	8	16	1.02
55974783--55974832	6	8.5	6	82	4	57	76	0	8	16	1.02
55978946--55979096	40	3.7	39	88	6	151	30	25	22	21	1.99
55978970--55979097	42	3.1	42	94	2	215	31	24	21	23	1.98
55986815--55986989	46	3.8	45	76	13	178	29	28	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55986822--55986993	93	1.8	93	91	2	283	28	27	20	22	1.99
55989450--55989579	42	3.1	41	90	4	190	33	23	17	26	1.96
55996100--55996150	27	1.9	26	84	4	66	19	27	17	35	1.94
55996082--55996222	71	2.1	66	85	6	183	20	29	19	30	1.97
55996190--55996249	27	2.3	26	82	2	66	23	25	16	35	1.95
56002282--56002502	40	5.6	40	86	6	265	24	28	22	24	2.00
56002282--56002498	79	2.7	80	82	8	264	25	27	22	25	2.00
56002282--56002501	118	1.9	120	83	7	297	25	27	22	25	2.00
56008803--56009026	40	5.7	40	86	6	296	25	27	21	24	1.99
56008803--56009026	79	2.8	79	87	5	301	25	27	21	24	1.99
56014128--56014385	67	3.9	63	77	11	225	24	29	15	29	1.96
56017014--56017073	27	2.3	27	85	2	77	21	23	20	35	1.96
56018478--56018649	46	3.7	46	77	13	199	30	27	19	22	1.98
56018482--56018653	93	1.8	93	96	0	317	30	27	19	22	1.98
56021000--56021062	31	2.0	31	90	6	101	39	0	14	46	1.45
56033887--56034070	40	4.6	39	83	6	203	25	22	27	25	2.00
56033887--56034070	78	2.3	80	81	9	207	25	22	27	25	2.00
56033940--56034095	78	2.0	78	81	8	183	26	20	26	25	1.99
56036334--56036706	47	8.1	47	88	6	514	30	9	30	29	1.89
56036336--56036706	139	2.7	136	89	4	532	30	9	30	29	1.89
56036824--56036901	36	2.1	36	83	6	95	25	19	30	24	1.98
56039032--56039177	40	3.7	40	82	7	172	23	22	28	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56039032--56039210	80	2.2	80	80	6	186	25	21	27	25	2.00
56041859--56042240	47	8.1	47	93	1	577	31	9	30	28	1.88
56042359--56042437	37	2.1	37	86	4	106	25	20	30	24	1.98
56049604--56049716	27	4.2	28	83	7	119	37	21	22	19	1.95
56049604--56049717	55	2.1	55	82	6	144	37	21	21	19	1.94
56049820--56049883	26	2.4	26	86	2	65	28	10	25	35	1.89
56050140--56050171	16	2.1	15	94	5	55	3	18	28	50	1.62
56065792--56065985	50	3.9	49	80	3	217	27	26	18	26	1.98
56065797--56065985	49	3.8	49	80	3	198	28	26	17	26	1.98
56065803--56065983	100	1.8	101	88	1	283	28	25	18	27	1.98
56066233--56066286	27	2.0	27	85	0	72	38	14	7	38	1.75
56068141--56068311	42	4.0	43	74	13	156	30	26	18	23	1.98
56069115--56069180	33	2.0	33	96	0	123	27	6	13	53	1.63
56086448--56086877	49	8.9	49	93	3	732	29	29	8	32	1.87
56086448--56086877	96	4.5	97	94	2	728	29	29	8	32	1.87
56086448--56086877	145	3.0	145	95	0	765	29	29	8	32	1.87
56091429--56091546	42	2.8	42	73	8	105	24	17	26	31	1.97
56100370--56100529	42	3.8	42	86	3	214	30	24	13	31	1.93
56100370--56100529	85	1.9	84	84	3	214	30	24	13	31	1.93
56108429--56108474	24	2.0	23	83	12	58	43	8	17	30	1.79
56109846--56109882	16	2.2	17	90	4	58	29	5	5	59	1.42
56119176--56119215	14	2.8	13	82	17	53	37	15	2	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56119932--56119968	16	2.2	17	90	4	58	29	5	5	59	1.42
56122599--56122800	27	7.5	27	78	4	174	40	18	9	31	1.83
56123533--56123584	27	2.0	26	84	3	68	19	26	21	32	1.97
56130300--56130484	27	6.8	27	78	4	149	40	20	8	30	1.82
56130300--56130539	27	8.9	27	77	4	146	39	20	8	31	1.83
56130442--56130565	54	2.3	53	76	8	126	37	21	10	29	1.87
56130523--56130576	27	2.0	27	85	0	72	38	18	18	24	1.93
56134074--56134130	25	2.2	25	93	3	96	29	12	24	33	1.92
56136396--56136456	27	2.3	27	85	5	79	44	4	21	29	1.73
56136411--56136464	27	2.0	27	96	0	99	42	3	24	29	1.72
56143024--56143067	22	2.0	22	82	8	54	40	13	15	29	1.86
56143294--56143395	40	2.6	40	86	7	129	27	25	23	23	2.00
56148381--56148564	40	4.6	40	79	5	201	25	22	25	26	2.00
56156522--56156705	40	4.6	40	81	6	221	25	23	26	25	2.00
56156522--56156736	80	2.7	79	83	6	258	24	23	26	26	2.00
56163030--56163073	22	2.0	22	82	8	54	38	13	18	29	1.89
56163298--56163478	40	4.6	40	90	2	278	28	26	22	22	1.99
56168060--56168186	50	2.6	50	82	1	157	32	25	15	26	1.96
56177010--56177139	52	2.6	50	80	7	145	33	26	13	26	1.94
56186826--56186957	42	3.1	42	73	8	124	19	25	29	25	1.99
56187981--56188116	71	1.9	71	92	0	227	38	17	16	27	1.92
56190357--56190405	25	2.0	25	91	0	80	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56190357--56190399	12	3.5	12	81	6	50	55	0	0	44	0.99
56191357--56191423	21	3.2	20	76	12	55	65	1	5	26	1.24
56191418--56191459	19	2.3	19	87	4	59	73	2	0	23	0.94
56191453--56191491	20	2.0	20	89	0	60	41	0	0	58	0.98
56191608--56191652	3	15.0	3	95	0	81	35	0	0	64	0.94
56212457--56212542	43	2.0	43	90	0	136	23	16	31	29	1.96
56223945--56224039	47	2.0	47	97	0	181	25	13	27	33	1.93
56241323--56241581	56	4.6	56	87	1	349	25	15	23	34	1.94
56241323--56241610	112	2.6	112	84	4	314	25	15	24	34	1.95
56247510--56247663	27	5.7	27	82	0	191	36	18	20	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325