Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  279  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91297005--91297050
13
3.1
16
82
14
55
45
0
4
50
1.21
91297066--91297100
16
2.2
16
89
0
52
57
0
0
42
0.99
91297062--91297107
13
3.1
15
72
15
51
52
0
0
47
1.00
91304811--91304948
43
3.2
43
76
6
120
27
23
19
28
1.98
91310922--91310975
23
2.3
23
93
0
90
27
24
5
42
1.76
91311399--91311778
182
2.1
182
88
2
573
21
23
12
42
1.86
91311387--91311770
46
8.4
46
88
2
524
21
23
12
42
1.87
91313658--91313721
24
2.5
27
77
10
80
56
3
0
40
1.15
91314919--91314961
22
2.0
22
100
0
86
32
20
4
41
1.73
91317397--91317441
22
2.0
22
91
0
72
48
15
15
20
1.80
91326095--91326729
47
13.5
47
94
0
1072
29
29
8
32
1.86
91326145--91326223
25
3.3
25
66
16
76
31
29
5
34
1.79
91329393--91329417
12
2.1
12
100
0
50
16
24
20
40
1.91
91329696--91329749
18
2.9
19
77
5
65
33
7
11
48
1.67
91329782--91329845
18
3.6
18
78
0
65
39
10
14
35
1.81
91334251--91334518
96
2.8
96
94
0
455
42
16
29
11
1.83
91337391--91337551
43
3.8
43
74
6
148
25
15
26
32
1.96
91338639--91339424
94
8.3
94
97
0
1421
25
29
10
33
1.90
91339249--91339372
23
5.4
22
65
21
74
26
29
8
34
1.87
91339367--91339441
23
3.1
25
62
30
63
28
29
10
32
1.90
91338685--91339441
47
16.1
47
83
4
988
25
29
10
33
1.90
91350906--91350962
30
1.9
30
85
3
80
57
22
1
17
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91362717--91362797
42
1.9
42
82
7
101
34
30
13
20
1.92
91364978--91365024
25
1.9
24
87
12
69
31
21
2
44
1.64
91365227--91365353
37
3.2
39
75
11
116
34
24
16
24
1.95
91366189--91366250
11
5.8
10
75
19
54
3
17
4
74
1.13
91366924--91366996
27
2.8
25
69
18
60
19
27
20
32
1.97
91367025--91367094
24
2.8
25
72
10
63
22
31
15
30
1.95
91369845--91369883
20
2.0
20
85
10
53
43
0
10
46
1.37
91373014--91373108
40
2.4
40
81
8
115
35
36
13
13
1.85
91375358--91375398
20
2.0
20
85
0
55
31
26
7
34
1.84
91377477--91377530
18
3.0
18
94
0
90
38
22
22
16
1.93
91377480--91377539
18
3.4
17
90
4
75
40
25
16
18
1.91
91378594--91378638
22
2.0
22
82
0
54
42
0
4
53
1.21
91381962--91382312
172
2.0
173
98
1
695
26
18
16
38
1.92
91383018--91383068
26
2.0
26
84
0
66
13
7
5
72
1.26
91383149--91383202
19
2.7
19
80
5
63
48
1
0
50
1.11
91383166--91383256
33
2.7
32
75
11
83
45
1
3
50
1.25
91386710--91386747
19
2.0
19
85
10
51
52
5
2
39
1.38
91387077--91387116
21
1.9
21
94
0
71
55
12
12
20
1.69
91399533--91399572
21
1.9
21
89
0
62
32
0
2
65
1.06
91399548--91399578
12
2.5
13
89
10
55
41
0
0
58
0.98
91402701--91402734
16
2.1
16
89
10
52
29
5
0
64
1.17
91406673--91406770
48
2.0
48
100
0
196
29
14
27
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91407805--91407837
12
2.8
12
90
0
57
6
24
42
27
1.78
91414406--91414462
28
2.0
28
93
0
96
43
17
14
24
1.86
91416074--91416130
29
1.9
30
82
3
71
42
21
8
28
1.82
91417197--91417253
22
2.6
22
75
5
62
40
22
1
35
1.65
91417930--91418057
47
2.7
47
78
2
132
32
28
14
24
1.95
91419486--91419555
25
2.9
25
79
8
65
34
21
22
21
1.97
91419570--91419637
26
2.6
26
88
0
91
41
17
23
17
1.90
91433835--91433893
25
2.4
25
82
0
73
30
18
6
44
1.76
91450119--91450143
3
8.3
3
100
0
50
0
32
0
68
0.90
91452563--91452595
11
2.8
12
82
17
50
66
0
6
27
1.15
91453020--91453090
15
4.7
15
72
5
54
28
1
5
64
1.24
91453609--91453658
17
3.2
17
67
21
54
56
4
8
32
1.47
91453608--91453660
18
3.3
18
65
29
55
56
3
7
32
1.45
91453609--91453665
30
1.9
30
100
0
114
56
3
7
33
1.43
91456125--91456268
27
5.3
27
77
5
103
40
21
9
29
1.84
91456248--91456384
27
5.1
27
89
0
177
32
21
5
40
1.75
91456620--91456671
27
2.0
26
84
3
68
17
26
21
34
1.95
91456889--91457066
6
28.8
6
71
17
116
17
17
15
48
1.81
91456889--91456953
25
2.6
25
90
0
94
15
20
16
47
1.82
91456908--91457018
31
3.6
30
75
13
109
18
18
15
47
1.82
91456908--91456990
37
2.2
37
89
0
130
16
20
16
45
1.85
91456951--91457012
25
2.5
26
92
5
101
20
17
14
46
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91456889--91457052
62
2.6
62
91
0
256
17
17
15
48
1.81
91456970--91457057
37
2.4
37
82
0
113
19
15
14
50
1.79
91468885--91468938
7
7.4
7
80
13
56
70
3
0
25
1.04
91477714--91477746
3
11.0
3
100
0
66
33
0
0
66
0.92
91488413--91488933
44
11.3
44
70
11
217
33
16
19
30
1.94
91488569--91488726
51
3.2
51
71
15
152
34
15
17
32
1.92
91488484--91488765
95
2.9
95
80
2
312
35
17
17
30
1.93
91488674--91488935
136
1.9
136
80
0
308
32
17
20
29
1.96
91490641--91490688
19
2.6
19
87
9
64
29
0
0
70
0.87
91490648--91490689
16
2.8
15
89
7
59
28
0
0
71
0.86
91490642--91490689
14
3.2
15
82
11
62
29
0
0
70
0.87
91492147--91492185
19
2.0
20
85
5
53
64
0
5
30
1.15
91492201--91492346
9
15.7
9
77
13
111
63
2
1
32
1.14
91493371--91493399
14
2.0
15
93
6
51
58
0
0
41
0.98
91493513--91493729
90
2.4
90
79
11
246
36
20
7
34
1.82
91493747--91493783
17
2.1
18
90
5
58
70
2
5
21
1.20
91493764--91493868
27
3.8
26
76
10
93
60
2
2
33
1.26
91493788--91493849
10
6.7
10
75
18
55
61
1
1
35
1.16
91493748--91493883
55
2.5
53
77
11
148
62
2
4
30
1.29
91493788--91493872
36
2.3
39
80
13
99
61
2
2
34
1.22
91493770--91493887
57
2.1
56
84
7
150
61
2
4
32
1.29
91494211--91494384
89
2.0
88
85
6
237
33
7
21
36
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91494215--91494413
89
2.2
88
81
8
226
35
7
19
38
1.79
91495555--91495657
41
2.5
41
84
1
109
33
19
24
22
1.97
91495579--91495760
41
4.5
41
85
3
242
29
17
26
26
1.97
91495596--91495761
80
2.0
82
88
2
246
29
18
27
25
1.98
91495930--91495954
7
3.6
7
100
0
50
16
0
24
60
1.36
91496693--91496736
14
3.1
14
80
9
54
20
0
47
31
1.50
91497117--91497162
21
2.1
22
84
4
58
30
0
23
45
1.53
91501505--91501939
43
10.1
42
73
13
165
21
21
28
29
1.98
91501501--91501939
86
5.1
87
74
9
330
21
21
27
29
1.98
91501780--91501963
85
2.2
86
81
8
216
22
21
25
29
1.99
91502119--91502147
8
3.6
8
100
0
58
37
10
13
37
1.79
91503661--91503712
14
3.6
14
73
12
52
48
1
0
50
1.12
91503724--91503765
13
2.9
14
80
13
50
54
0
0
45
0.99
91503728--91503764
16
2.3
16
86
13
58
59
0
0
40
0.97
91503797--91503853
15
3.5
15
73
17
60
50
1
0
47
1.11
91503901--91503964
29
2.2
29
83
5
85
26
12
9
51
1.70
91510057--91510090
18
1.9
17
88
5
50
35
20
0
44
1.52
91513205--91513249
23
2.0
23
86
8
65
71
0
2
26
0.98
91513207--91513239
14
2.4
14
100
0
66
72
0
0
27
0.85
91514468--91514523
28
2.0
29
82
10
71
14
17
53
14
1.73
91514984--91515325
45
7.6
45
67
15
190
25
23
22
28
1.99
91514842--91515329
135
3.6
135
92
2
763
25
22
21
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91526948--91526992
23
2.0
23
86
8
65
71
0
2
26
0.98
91526950--91526982
14
2.4
14
100
0
66
72
0
0
27
0.85
91528215--91528270
28
2.0
29
82
10
71
14
17
53
14
1.73
91528482--91528512
16
1.9
16
93
0
53
64
6
0
29
1.18
91528800--91528959
82
2.0
82
88
5
243
34
9
16
39
1.81
91530057--91530112
22
2.6
21
81
18
78
57
1
0
41
1.09
91530104--91530165
25
2.5
26
86
5
83
61
1
1
35
1.16
91530297--91530345
25
2.0
25
84
8
64
36
0
2
61
1.08
91531067--91531311
136
1.8
136
83
0
328
35
15
13
35
1.87
91533088--91533156
24
2.9
24
86
0
93
43
18
15
21
1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325