genome.fa.s3.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  156  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49926062--49926237	46	3.8	46	79	12	207	21	20	27	30	1.98
49926059--49926229	93	1.8	93	93	0	297	21	21	28	29	1.98
49929487--49929519	14	2.5	13	90	9	57	72	0	9	18	1.10
49930497--49930596	28	3.6	28	84	0	128	27	35	12	26	1.91
49935910--49936966	47	22.3	47	93	1	1754	33	8	28	29	1.87
49935910--49936966	237	4.5	237	94	1	1743	33	8	28	29	1.87
49937085--49937186	37	2.8	37	93	0	168	25	18	29	26	1.98
49939754--49939787	18	1.9	18	88	5	52	29	17	11	41	1.85
49944043--49944539	47	10.6	47	93	1	845	29	29	8	32	1.87
49944447--49944522	22	3.3	22	64	10	62	27	30	11	30	1.92
49945045--49945095	22	2.3	22	80	10	59	15	15	25	43	1.86
49953066--49953176	27	4.1	27	76	10	102	14	22	24	38	1.91
49964223--49964445	49	4.6	49	76	6	179	23	28	20	28	1.99
49964222--49964407	98	1.9	97	86	3	266	22	29	19	28	1.98
49965882--49965961	30	2.7	30	92	0	133	20	13	25	41	1.88
49965882--49965978	30	3.2	29	85	8	122	20	12	23	43	1.86
49965969--49966040	29	2.5	29	86	0	90	22	16	29	31	1.96
49965992--49966047	29	1.9	29	92	0	94	19	14	30	35	1.91
49965999--49966245	59	4.2	59	74	3	194	21	14	21	42	1.89
49965889--49966192	30	10.2	30	70	8	90	21	15	22	41	1.90
49966380--49966450	30	2.4	29	85	4	88	21	12	26	39	1.89
49988586--49988656	35	2.0	35	88	0	106	26	11	23	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49990018--49990189	93	1.8	93	94	0	308	28	30	20	20	1.98
49990010--49990185	46	3.8	46	79	10	214	29	29	19	21	1.98
49995564--49995731	40	4.2	40	83	4	106	25	27	23	23	2.00
49995587--49995731	40	3.6	40	85	4	193	23	26	24	25	2.00
50003894--50003919	12	2.2	12	100	0	52	50	7	0	42	1.31
50007395--50007463	32	2.1	33	91	2	113	31	11	20	36	1.88
50008083--50008182	24	4.0	24	72	10	92	40	16	18	26	1.90
50008079--50008192	52	2.2	52	85	0	147	37	14	19	28	1.91
50008218--50008366	51	2.9	51	91	4	239	32	14	24	28	1.95
50011994--50012063	35	2.0	35	91	0	113	42	24	8	24	1.82
50025489--50025577	30	3.0	30	79	8	92	58	15	16	8	1.62
50025489--50025568	15	5.4	15	79	7	83	60	13	17	8	1.58
50025500--50025577	15	5.2	15	78	6	70	57	15	16	10	1.64
50031112--50031157	16	2.9	16	83	6	58	60	2	36	0	1.09
50036043--50036091	24	2.0	24	96	0	89	40	8	18	32	1.80
50039522--50039594	4	18.0	4	71	23	55	67	0	30	2	1.05
50039543--50039590	15	3.5	14	86	8	64	68	0	27	4	1.07
50039532--50039594	18	3.0	20	75	20	58	68	0	28	3	1.05
50040043--50040072	15	1.9	16	93	6	53	33	0	26	40	1.57
50054970--50055132	40	4.1	40	88	0	236	23	19	30	26	1.98
50054976--50055150	80	2.2	80	88	3	255	22	20	30	26	1.98
50058925--50059053	46	2.8	46	95	0	222	19	21	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50060342--50060535	40	4.9	40	88	3	263	22	21	27	28	1.99
50068362--50068521	79	2.0	79	90	2	250	21	21	30	26	1.98
50068362--50068521	39	4.1	40	90	1	252	21	21	30	26	1.98
50068763--50068806	22	2.0	22	82	8	54	31	11	13	43	1.80
50074050--50074111	31	2.0	32	84	9	83	37	19	24	19	1.94
50081515--50081630	43	2.7	43	85	1	135	31	31	17	18	1.94
50081532--50081630	42	2.3	43	85	1	128	32	33	18	16	1.93
50084373--50084408	5	7.0	5	87	6	54	41	0	19	38	1.52
50085364--50085419	26	2.2	26	83	0	67	60	16	3	19	1.49
50091943--50091972	15	2.0	15	93	0	51	23	0	30	46	1.52
50091991--50092056	25	2.6	25	79	9	89	36	10	28	24	1.89
50100449--50100578	45	2.9	45	90	2	199	29	28	20	21	1.98
50100571--50100772	38	5.3	38	87	2	289	31	24	21	23	1.98
50100571--50100772	76	2.7	76	92	0	323	31	24	21	23	1.98
50100571--50100808	38	6.2	38	86	3	282	30	24	21	23	1.99
50107209--50107244	18	2.1	17	89	5	54	50	8	0	41	1.33
50111185--50111434	123	2.0	123	99	0	491	29	13	27	29	1.94
50117185--50117304	46	2.5	48	84	5	147	30	18	27	24	1.98
50117188--50117497	49	6.5	49	74	8	214	27	19	28	24	1.99
50117180--50117449	142	1.9	138	83	7	348	26	19	28	25	1.98
50125662--50125741	27	3.0	27	88	0	115	31	15	22	31	1.94
50125736--50126011	27	10.2	28	80	7	175	43	19	7	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50125753--50125907	54	2.9	54	87	2	197	43	19	6	30	1.76
50125753--50125932	81	2.2	81	84	1	218	43	20	6	30	1.77
50125996--50126047	27	1.9	27	84	7	70	38	13	13	34	1.84
50126308--50126430	41	3.0	41	95	0	219	21	23	30	25	1.99
50132617--50132840	40	5.5	40	91	3	308	24	28	22	24	1.99
50132643--50132847	43	4.9	43	92	1	314	24	28	21	24	1.99
50132617--50132847	86	2.8	83	89	5	319	24	28	22	25	1.99
50140618--50140845	43	5.6	42	90	5	280	25	28	19	25	1.99
50140657--50140845	43	4.6	43	92	4	288	25	28	20	25	1.99
50145307--50145339	13	2.6	13	90	4	50	39	0	12	48	1.40
50150682--50150735	6	8.8	6	89	2	72	14	3	1	79	0.95
50153634--50153666	13	2.6	13	90	4	50	39	0	12	48	1.40
50154367--50154411	20	2.2	20	96	0	81	22	11	24	42	1.86
50157877--50157915	21	1.9	20	84	5	51	30	2	20	46	1.64
50172669--50172707	20	2.0	20	94	0	69	41	5	20	33	1.74
50174909--50174940	16	2.0	16	93	0	55	34	6	34	25	1.81
50186611--50186660	25	2.0	25	92	0	82	24	4	36	36	1.74
50191619--50191668	25	2.0	25	92	0	82	24	4	36	36	1.74
50202588--50202620	17	2.0	17	88	5	50	36	9	15	39	1.79
50210120--50210185	33	2.0	33	100	0	132	42	6	9	42	1.61
50232816--50233046	40	5.8	40	91	2	340	23	23	29	23	1.99
50235992--50236161	47	3.7	46	74	10	175	22	19	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50236045--50236214	46	3.7	46	75	13	195	21	20	29	28	1.98
50235993--50236207	93	2.3	93	90	0	349	21	20	29	28	1.98
50256296--50256349	22	2.5	22	96	0	99	14	29	25	29	1.95
50258098--50258175	38	2.1	38	100	0	156	34	2	15	47	1.59
50269412--50270052	47	13.6	47	94	1	1093	29	29	8	32	1.86
50269412--50270052	190	3.4	190	95	0	1115	29	29	8	32	1.86
50269412--50270052	143	4.5	141	94	1	1066	29	29	8	32	1.86
50274646--50274860	40	5.4	40	88	3	303	24	22	27	25	2.00
50274640--50274860	79	2.8	80	88	4	306	25	22	27	25	2.00
50281364--50281405	21	2.0	21	85	0	57	69	2	14	14	1.30
50282865--50283081	40	5.5	40	85	3	271	25	22	27	24	2.00
50282865--50283081	119	1.8	119	83	5	287	25	22	27	24	2.00
50297475--50297499	6	4.2	6	100	0	50	16	0	0	84	0.63
50298707--50298929	49	4.7	47	72	9	132	26	18	27	26	1.98
50300764--50300936	46	3.7	46	79	10	208	22	21	27	28	1.99
50300761--50300931	93	1.8	93	94	0	306	22	21	28	28	1.99
50308337--50308509	46	3.7	46	78	13	210	21	21	27	28	1.99
50308334--50308504	93	1.8	93	96	0	315	21	21	28	28	1.99
50332438--50332543	42	2.5	43	84	1	133	20	22	29	27	1.99
50332438--50332563	43	3.0	43	84	1	146	21	21	29	27	1.98
50339246--50339358	42	2.7	42	84	1	136	19	21	29	30	1.97
50339246--50339371	43	3.0	43	83	1	119	19	20	30	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50347977--50348062	43	2.0	43	83	0	109	19	22	30	27	1.98
50348021--50348120	51	2.0	51	85	0	137	22	18	28	32	1.97
50354782--50354881	51	2.0	51	84	4	130	22	19	28	31	1.97
50359285--50359461	46	3.8	45	78	10	187	21	19	29	29	1.97
50359281--50359452	93	1.8	93	93	0	299	20	19	30	29	1.97
50361800--50362025	40	5.7	40	93	1	382	25	27	22	23	2.00
50369999--50370223	40	5.6	40	93	1	380	25	28	22	23	2.00
50376400--50376572	45	3.8	45	79	6	197	21	19	30	28	1.98
50379706--50379759	27	2.0	27	85	0	72	38	7	14	38	1.75
50380006--50380200	49	3.9	49	79	5	230	25	19	27	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325