genome.fa.s3.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  133  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42660147--42660178	10	3.3	10	95	4	57	31	6	0	62	1.20
42666517--42666609	3	33.0	3	80	16	101	27	1	0	70	0.94
42668560--42668612	1	53.0	1	76	0	52	88	0	9	1	0.58
42668560--42668612	11	4.7	11	88	4	72	88	0	9	1	0.58
42668560--42668611	18	2.8	18	86	11	70	88	0	9	1	0.59
42668560--42668612	20	2.7	20	85	11	72	88	0	9	1	0.58
42672330--42672419	44	2.0	44	95	0	162	36	22	13	27	1.91
42673836--42673883	18	2.7	18	74	6	53	77	4	2	16	1.03
42674392--42674436	20	2.2	20	92	0	72	31	2	4	62	1.27
42677891--42678077	79	2.4	77	81	10	211	45	9	16	28	1.78
42679683--42679772	45	2.0	45	97	0	171	32	11	14	42	1.81
42685911--42685944	18	1.9	17	94	5	59	47	14	11	26	1.79
42689064--42689114	18	2.9	17	77	13	50	21	11	0	66	1.23
42690022--42690218	89	2.2	88	85	7	265	38	20	10	30	1.86
42690022--42690299	89	3.1	87	81	7	258	39	20	10	29	1.86
42690412--42690542	10	13.8	9	68	15	50	59	3	3	34	1.28
42690441--42690554	30	3.9	28	71	13	79	61	3	2	32	1.27
42690497--42690561	20	3.2	20	68	12	60	64	3	3	29	1.23
42690481--42690561	10	8.0	10	67	17	51	66	2	3	27	1.21
42690741--42690817	10	8.0	9	70	12	55	25	6	1	66	1.24
42694156--42694239	44	1.9	44	92	0	141	38	22	10	28	1.88
42695679--42695832	43	3.6	43	79	8	170	24	16	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42697383--42697470	30	2.9	30	78	6	106	29	27	15	27	1.96
42697878--42697902	13	1.9	13	100	0	50	16	32	16	36	1.90
42703721--42703849	46	2.8	46	93	0	213	20	21	28	29	1.98
42725219--42725245	10	2.7	10	100	0	54	22	22	18	37	1.95
42734424--42734472	24	2.0	24	92	0	80	34	14	2	48	1.55
42735239--42735275	18	2.1	18	94	0	65	21	2	24	51	1.61
42742312--42742350	20	2.0	19	90	5	60	12	30	15	41	1.85
42742316--42742370	20	2.8	20	81	13	53	14	30	20	34	1.92
42746399--42746571	93	1.9	93	86	4	251	21	19	29	29	1.98
42746404--42746577	46	3.8	44	76	11	154	21	18	28	30	1.97
42763335--42763503	92	1.8	93	89	1	268	29	27	20	22	1.98
42763327--42763501	46	3.8	46	76	6	183	30	28	19	22	1.98
42765883--42765962	31	2.6	31	81	11	94	58	13	16	11	1.62
42765883--42765953	15	4.7	15	78	11	83	60	11	16	11	1.58
42768874--42769042	92	1.8	93	88	3	261	30	27	18	22	1.98
42768866--42769040	46	3.8	46	76	7	176	31	28	18	22	1.97
42770383--42770410	13	2.2	13	100	0	56	28	0	7	64	1.20
42771492--42771725	96	2.5	95	82	2	263	30	19	24	25	1.98
42771491--42771816	48	6.9	48	73	6	209	28	19	25	26	1.99
42771521--42771751	96	2.4	95	82	5	259	31	19	24	25	1.98
42771503--42771792	144	2.1	138	79	7	298	30	19	25	25	1.98
42777225--42777429	27	7.6	27	85	3	205	29	29	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42777225--42777428	54	3.8	54	84	3	257	29	29	15	25	1.96
42777279--42777428	81	1.9	81	88	0	228	27	28	16	27	1.97
42785365--42785569	27	7.6	27	84	5	198	29	28	15	26	1.96
42785365--42785568	54	3.8	53	83	4	239	29	28	15	26	1.96
42785365--42785568	81	2.5	81	80	5	223	29	28	15	26	1.96
42789382--42789465	35	2.4	35	86	7	125	27	23	19	29	1.98
42796737--42797043	81	3.8	81	82	4	377	28	14	15	40	1.88
42796737--42797046	27	11.5	27	85	1	325	29	14	15	40	1.88
42797403--42797461	18	3.2	18	74	11	57	23	27	18	30	1.98
42798071--42798100	16	1.9	16	93	6	53	30	0	20	50	1.49
42799774--42799807	17	2.0	17	88	0	50	41	5	0	52	1.25
42803719--42803757	20	2.0	20	89	0	60	48	2	12	35	1.55
42832345--42832402	29	2.0	29	100	0	116	31	24	17	27	1.97
42833778--42833898	46	2.6	46	81	7	138	23	28	17	29	1.97
42840584--42840696	46	2.5	45	84	9	133	24	30	19	25	1.98
42842340--42842410	36	2.0	36	94	0	124	36	8	19	35	1.82
42846885--42846977	39	2.5	37	80	7	98	27	29	22	20	1.98
42847333--42847380	3	16.0	3	82	0	60	58	6	0	35	1.23
42847334--42847382	18	2.7	18	93	0	80	55	8	0	36	1.30
42847333--42847380	12	4.0	12	91	0	69	58	6	0	35	1.23
42848076--42848109	16	2.1	16	94	0	59	5	14	5	73	1.21
42848087--42848126	20	2.0	20	85	9	55	5	15	2	77	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42848257--42848324	31	2.3	28	78	9	73	41	2	1	54	1.24
42848303--42848341	21	1.9	20	84	5	51	46	2	0	51	1.14
42863939--42864251	47	6.7	46	73	12	201	29	18	28	24	1.98
42863939--42864235	140	2.1	140	81	10	331	28	17	28	25	1.98
42865389--42865443	21	2.6	21	97	0	101	10	34	30	23	1.89
42874073--42874189	58	2.0	58	85	4	157	34	21	14	29	1.93
42876318--42876493	56	3.1	56	99	0	343	44	9	23	22	1.81
42877620--42877802	79	2.3	82	83	7	225	24	21	27	25	1.99
42877620--42877804	40	4.7	40	82	6	216	24	21	28	25	1.99
42877657--42877837	79	2.3	78	78	12	199	27	19	27	25	1.99
42884281--42884399	55	2.1	56	98	1	231	44	9	23	22	1.81
42885526--42885708	79	2.3	81	84	7	232	24	22	27	25	2.00
42885527--42885710	40	4.6	40	83	9	216	23	22	28	25	2.00
42885579--42885743	79	2.1	79	84	6	210	25	21	27	25	1.99
42891919--42892051	56	2.4	54	91	2	203	33	26	12	27	1.93
42892065--42892349	41	6.8	42	78	5	281	30	24	17	27	1.97
42892065--42892350	84	3.4	84	91	0	439	30	24	17	27	1.97
42904669--42904697	13	2.2	13	100	0	58	55	13	0	31	1.39
42911295--42911355	30	2.0	30	83	0	77	31	22	8	37	1.84
42930637--42930779	40	3.5	40	85	1	178	34	25	14	25	1.94
42933787--42933887	28	3.6	27	85	7	123	26	34	13	24	1.93
42933889--42933964	40	1.9	40	83	0	98	36	19	14	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42939301--42939428	23	5.6	23	75	13	120	37	19	20	22	1.94
42939301--42939428	45	2.8	46	77	11	145	37	19	20	22	1.94
42943389--42943561	43	4.0	43	80	6	199	31	26	15	27	1.95
42956025--42956055	12	2.6	12	100	0	62	58	6	0	35	1.24
42958531--42958592	22	2.9	21	75	20	56	72	4	1	20	1.12
42960896--42961037	47	3.0	47	93	1	232	29	14	12	43	1.82
42961820--42962039	45	5.0	45	87	3	297	23	20	29	26	1.99
42968540--42968775	47	5.0	47	95	0	411	29	13	13	43	1.82
42969560--42969732	45	4.0	45	85	5	214	23	20	28	26	1.99
42973422--42973451	16	1.9	16	93	6	53	33	23	0	43	1.54
42973663--42973898	50	4.7	50	76	8	212	31	24	17	26	1.97
42973712--42973893	101	1.8	101	88	0	283	30	23	18	27	1.98
42980496--42980639	40	3.6	40	84	3	200	25	26	22	25	2.00
42980461--42980639	80	2.3	79	87	3	245	25	26	22	25	2.00
42983756--42983785	16	1.9	15	93	6	51	33	23	0	43	1.54
42983947--42984172	50	4.5	49	77	5	202	32	27	15	24	1.95
42983947--42984173	100	2.3	100	83	3	287	32	27	15	25	1.95
42985998--42986147	42	3.5	42	79	7	142	30	25	16	28	1.96
42986862--42986925	18	3.6	18	68	19	53	21	31	0	46	1.52
42988099--42988193	46	2.1	46	97	0	181	25	17	14	42	1.88
42988191--42988515	44	7.0	44	71	13	215	29	20	15	34	1.94
42988198--42988515	95	3.4	95	82	8	334	30	20	15	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42998929--42998972	22	2.0	22	90	0	70	56	2	0	40	1.11
42998929--42998971	10	4.1	10	80	11	50	58	2	0	39	1.11
43005672--43005704	9	3.7	9	91	0	57	24	12	21	42	1.86
43005858--43005906	20	2.5	19	87	6	71	55	8	0	36	1.30
43005857--43005922	19	3.4	19	85	6	80	54	7	0	37	1.29
43005877--43005933	19	3.1	19	82	7	64	54	5	0	40	1.23
43009934--43009960	4	6.8	4	100	0	54	77	0	22	0	0.76
43010572--43010601	12	2.5	12	100	0	60	46	16	0	36	1.47
43012839--43012872	6	5.7	6	100	0	68	52	14	0	32	1.42
43013122--43013175	18	2.9	19	72	5	56	33	1	1	62	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325