genome.fa.s3.2.7.7.80.10.50.1000.227.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  227  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74300409--74300610	27	7.4	27	75	7	115	41	16	8	32	1.80
74300498--74300591	27	3.4	27	81	13	120	42	15	8	32	1.78
74300649--74300713	27	2.4	27	82	5	78	36	18	24	20	1.94
74301531--74301590	25	2.4	25	82	0	75	25	31	18	25	1.97
74301549--74301600	25	2.1	25	82	3	61	36	23	15	25	1.93
74301813--74301895	31	2.7	31	92	3	134	28	16	26	27	1.97
74311681--74312038	48	7.4	48	78	3	351	26	25	18	29	1.98
74311683--74312038	96	3.7	96	84	2	435	26	25	18	29	1.98
74313227--74313274	24	2.0	24	100	0	96	33	25	4	37	1.75
74314648--74314687	21	2.0	21	90	5	64	20	27	40	12	1.88
74326503--74326581	28	2.8	28	78	5	79	26	10	30	32	1.89
74330182--74330510	38	7.9	38	72	17	244	29	15	24	29	1.96
74330220--74330469	133	1.9	132	88	0	383	30	15	24	30	1.96
74330082--74330422	171	2.0	171	94	0	601	29	15	24	30	1.95
74330130--74330507	85	4.4	85	81	12	495	29	15	24	29	1.96
74333288--74333494	42	4.8	42	76	10	157	28	25	17	28	1.97
74333309--74333523	42	4.8	42	77	10	169	28	26	16	27	1.97
74333276--74333443	90	1.9	90	84	2	230	25	26	18	29	1.98
74333448--74333667	48	4.6	48	78	5	194	26	29	16	26	1.97
74343048--74343303	40	6.4	41	90	3	321	27	27	21	24	1.99
74346261--74346321	30	2.0	30	90	0	95	39	8	24	27	1.84
74346982--74347131	68	2.3	63	80	8	158	29	16	28	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74355663--74355765	43	2.4	42	91	6	163	31	22	15	31	1.95
74355663--74355811	43	3.5	42	84	9	153	32	20	14	32	1.92
74361900--74362015	29	4.0	29	79	1	126	28	31	15	24	1.95
74374688--74374887	40	5.0	40	93	2	298	24	23	27	26	2.00
74378878--74379053	46	3.8	46	77	12	198	29	27	20	22	1.98
74378927--74379065	47	3.0	46	74	16	135	29	28	19	23	1.98
74384727--74384941	40	5.4	40	88	2	267	25	21	27	25	1.99
74386321--74386361	17	2.4	17	88	8	57	39	0	17	43	1.49
74386764--74386818	24	2.3	24	80	0	65	16	43	7	32	1.75
74391492--74391516	10	2.5	10	100	0	50	28	20	12	40	1.87
74396417--74396484	33	2.1	33	100	0	136	25	17	17	39	1.91
74398197--74398249	18	2.9	18	97	0	97	20	20	13	45	1.84
74402106--74402326	40	5.6	40	91	2	331	21	27	23	27	1.99
74405207--74405340	46	2.9	45	79	8	137	31	18	26	23	1.97
74405392--74405512	49	2.5	49	87	2	172	28	20	28	22	1.99
74422536--74422664	46	2.8	46	79	9	147	28	20	30	20	1.98
74426371--74426408	18	2.1	19	90	5	60	34	0	0	65	0.93
74426483--74426592	50	2.2	50	95	0	193	33	16	12	37	1.87
74426496--74426596	50	2.0	50	100	0	202	31	15	13	38	1.87
74439114--74439214	48	2.1	48	94	0	175	36	2	22	37	1.70
74439442--74439494	24	2.2	25	96	3	99	28	3	32	35	1.75
74445973--74446014	8	5.4	8	94	5	77	73	0	0	26	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74446123--74446163	10	4.1	10	84	12	57	58	2	0	39	1.11
74447354--74447379	6	4.3	6	100	0	52	34	0	0	65	0.93
74449299--74449326	5	5.6	5	100	0	56	60	0	0	39	0.97
74449306--74449347	18	2.3	19	84	8	52	64	4	0	30	1.14
74453144--74453195	19	2.9	17	75	10	59	25	15	13	46	1.82
74455657--74455717	30	2.1	29	96	3	113	36	22	16	24	1.94
74462547--74462608	20	3.3	18	86	8	54	62	3	0	33	1.11
74462545--74462587	5	8.6	5	100	0	86	60	0	0	39	0.97
74462651--74462701	14	3.8	14	82	15	63	70	1	27	0	0.98
74463379--74463417	16	2.4	17	91	8	64	48	0	0	51	1.00
74463421--74463450	14	2.1	14	93	0	51	83	0	3	13	0.77
74473416--74473803	92	4.2	92	87	0	542	31	19	23	26	1.98
74475105--74475154	26	1.9	26	83	0	64	68	2	16	14	1.31
74475769--74475802	18	1.9	17	88	5	50	11	41	20	26	1.87
74479725--74479767	21	2.2	20	87	8	61	39	0	4	55	1.20
74490617--74490648	15	2.1	15	100	0	64	37	40	6	15	1.73
74497311--74497394	26	3.3	26	91	8	131	27	23	19	29	1.98
74525741--74525809	34	2.0	34	100	0	138	43	23	8	24	1.82
74527151--74527602	47	9.6	47	92	1	699	34	9	28	28	1.88
74529016--74529327	40	7.8	40	92	0	471	23	21	28	26	1.99
74531926--74532058	69	1.9	70	90	1	214	32	14	16	36	1.89
74533437--74533935	47	10.6	47	94	0	845	33	8	29	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74537018--74537078	30	2.1	30	93	3	106	36	21	16	26	1.94
74538237--74538286	25	2.0	25	81	11	59	48	12	0	40	1.40
74542732--74543565	49	17.6	47	93	3	1270	33	8	29	28	1.86
74542732--74543565	96	8.8	96	92	3	1354	33	8	29	28	1.86
74543039--74543114	22	3.3	22	66	16	64	32	10	30	26	1.90
74543417--74543490	22	3.3	22	64	17	62	29	10	31	28	1.91
74543684--74543821	37	3.7	37	93	0	231	25	18	30	26	1.98
74545364--74545554	61	3.0	63	78	17	212	42	3	4	49	1.39
74552505--74552622	48	2.4	48	81	1	137	26	24	18	30	1.98
74555544--74555579	18	2.0	18	88	0	54	25	22	13	38	1.91
74559712--74559895	40	4.6	40	83	6	212	25	22	26	25	2.00
74559712--74559931	80	2.8	80	84	5	261	25	22	26	25	2.00
74572022--74572061	21	2.0	21	95	5	73	20	30	40	10	1.85
74573203--74573421	47	4.6	47	74	14	184	23	30	17	28	1.97
74573250--74573471	94	2.3	94	83	6	261	24	30	17	27	1.97
74575557--74575597	20	2.0	20	100	0	82	43	19	12	24	1.85
74575640--74575808	49	3.4	49	85	1	205	22	26	20	30	1.98
74575639--74575954	98	3.3	97	79	5	259	23	26	19	30	1.98
74575779--74576231	46	9.7	46	75	10	321	25	26	19	28	1.99
74575779--74576231	94	4.8	95	74	10	339	25	26	19	28	1.99
74575783--74576228	232	1.9	232	89	0	687	25	26	19	28	1.98
74578108--74578142	18	2.0	18	94	5	63	22	31	34	11	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74580106--74580157	11	4.4	11	73	17	50	44	1	1	51	1.23
74585204--74585463	40	6.4	39	81	8	256	26	15	25	33	1.95
74585202--74585463	120	2.2	119	82	8	298	25	14	25	33	1.94
74589137--74589192	28	2.0	29	89	3	87	14	21	44	19	1.86
74590474--74590677	47	4.3	47	90	1	300	32	8	30	28	1.87
74592310--74592469	43	3.7	43	75	11	148	31	25	18	24	1.98
74594104--74594182	37	2.1	37	90	0	122	25	31	18	24	1.98
74594301--74594758	47	9.7	47	95	0	783	28	29	8	32	1.87
74603841--74603995	43	3.6	42	82	14	192	29	24	20	25	1.99
74603841--74604000	86	1.9	85	87	8	236	30	25	20	25	1.99
74607221--74607369	43	3.5	42	80	6	176	34	22	11	31	1.89
74610696--74610740	17	2.6	18	80	16	51	48	2	0	48	1.13
74610973--74611011	12	2.9	14	81	14	55	15	82	0	2	0.79
74610984--74611011	6	4.7	6	100	0	56	14	85	0	0	0.59
74610984--74611020	18	2.1	18	89	0	56	18	78	0	2	0.87
74615278--74615306	13	2.2	13	100	0	58	24	6	0	68	1.13
74615834--74615907	10	7.8	10	66	22	52	45	12	24	17	1.82
74615836--74615913	17	4.3	17	81	15	102	46	12	23	17	1.83
74616809--74616858	3	16.7	3	100	0	100	34	0	0	66	0.92
74618053--74618108	29	1.9	29	100	0	112	16	32	25	26	1.96
74618058--74618120	29	2.2	29	82	5	74	19	38	17	25	1.93
74624049--74624156	44	2.4	45	80	8	123	31	13	26	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74624243--74624381	44	3.2	44	72	8	138	28	23	19	28	1.98
74624992--74625306	44	7.2	44	61	15	121	26	24	22	26	2.00
74624215--74625329	88	12.7	88	88	0	1539	26	23	21	27	1.99
74625407--74625944	44	11.7	44	73	12	328	30	19	23	27	1.98
74625445--74625888	96	4.7	95	72	13	283	30	19	22	27	1.98
74625402--74625956	140	4.0	140	86	1	756	30	19	22	26	1.98
74627617--74627650	11	3.2	10	84	15	50	11	2	0	85	0.71
74638631--74638742	56	2.0	56	94	0	197	32	16	23	27	1.96
74652689--74652756	16	4.3	15	77	17	57	29	8	16	45	1.77
74654995--74655050	26	2.2	26	83	6	69	60	5	0	33	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325