Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  295  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96249957--96250007
26
2.0
26
96
0
93
29
35
23
11
1.90
96249819--96250086
104
2.6
105
92
3
450
29
30
20
19
1.97
96258955--96259449
44
11.3
44
63
14
180
21
24
20
33
1.97
96258955--96259637
88
7.8
88
85
2
852
22
24
21
32
1.98
96264037--96264088
25
2.1
25
96
0
95
51
3
9
34
1.53
96266718--96266756
19
2.1
19
85
9
53
43
0
5
51
1.24
96271801--96271833
12
2.9
11
91
8
57
27
18
27
27
1.98
96273678--96273714
19
1.9
19
88
0
56
35
5
0
59
1.20
96287087--96287593
257
2.0
256
88
1
746
34
12
18
34
1.89
96291928--96292026
28
3.7
28
81
13
127
38
13
21
27
1.90
96292050--96292303
51
4.9
51
92
2
393
30
13
24
30
1.94
96295400--96295501
32
3.2
32
68
18
104
46
3
17
32
1.67
96295377--96295502
63
2.0
63
98
0
243
45
3
19
32
1.66
96299237--96299413
50
3.5
50
89
0
273
35
15
22
26
1.94
96299389--96299498
31
3.5
31
91
0
175
28
19
27
25
1.98
96299606--96299711
49
2.2
48
91
3
167
29
11
27
32
1.91
96299667--96299778
42
2.7
42
83
2
145
31
14
25
28
1.95
96303171--96303293
46
2.7
46
97
0
228
24
26
21
28
1.99
96310837--96310888
21
2.5
21
90
0
77
30
28
7
32
1.85
96314513--96314572
27
2.2
27
82
5
68
61
1
8
28
1.34
96314786--96314882
26
3.9
25
77
8
81
63
5
4
26
1.33
96317221--96317262
22
1.9
22
90
9
68
33
4
2
59
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96318465--96318504
11
3.6
11
79
0
53
20
10
10
60
1.57
96318687--96318726
18
2.2
18
86
8
55
20
0
12
67
1.22
96318734--96318761
12
2.3
12
100
0
56
64
0
0
35
0.94
96325472--96325498
2
13.5
2
100
0
54
51
0
0
48
1.00
96328325--96328361
17
2.1
19
85
10
51
70
0
16
13
1.17
96331701--96331729
1
29.0
1
100
0
58
0
0
0
100
0.00
96331989--96332038
20
2.5
20
80
3
64
22
8
14
56
1.64
96334298--96334333
11
3.2
12
88
11
58
47
0
52
0
1.00
96334436--96334488
18
2.8
18
77
8
61
20
1
1
75
0.99
96335330--96335359
6
5.0
6
100
0
60
16
0
0
83
0.65
96348320--96348352
5
6.6
5
89
10
50
78
0
0
21
0.75
96352756--96352787
5
6.6
5
92
7
57
81
0
0
18
0.70
96356049--96356073
11
2.3
11
100
0
50
16
0
8
76
1.02
96372022--96372159
72
1.9
72
87
0
204
34
18
26
21
1.96
96374219--96374260
22
2.0
21
90
4
66
33
0
7
59
1.25
96374291--96374354
13
4.4
14
70
18
51
25
4
1
68
1.17
96374033--96374943
154
6.1
148
78
11
815
29
8
6
55
1.54
96374384--96375092
146
4.9
144
76
14
650
28
8
6
55
1.55
96374096--96374940
303
2.8
294
86
7
1048
29
8
6
55
1.54
96375531--96375593
14
4.4
14
74
14
58
0
31
0
68
0.90
96375542--96375588
19
2.6
18
78
15
51
0
36
0
63
0.94
96375631--96375697
3
22.7
3
73
14
59
0
34
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96375645--96375697
8
6.9
8
81
14
58
0
37
0
62
0.96
96375625--96375696
16
4.1
18
75
20
64
1
36
0
62
1.04
96386574--96386623
20
2.5
20
86
0
64
16
42
32
10
1.81
96388501--96388535
14
2.6
13
86
8
52
22
25
11
40
1.88
96393467--96393508
22
2.0
21
86
13
59
50
21
0
28
1.49
96399738--96399767
15
1.9
16
93
6
53
70
0
30
0
0.88
96401219--96401325
21
5.1
21
87
0
142
15
22
26
35
1.94
96401219--96401325
42
2.5
42
90
0
178
15
22
26
35
1.94
96414224--96414395
93
1.8
93
96
0
317
27
29
21
20
1.98
96414217--96414392
46
3.8
46
79
12
216
28
29
21
20
1.98
96417507--96417536
15
1.9
16
93
6
53
70
0
30
0
0.88
96418987--96419072
21
4.1
21
86
0
100
16
22
25
36
1.94
96419977--96420072
25
3.8
25
78
0
102
32
21
22
22
1.98
96419973--96420072
50
2.0
50
86
0
137
34
21
22
23
1.97
96421743--96421776
15
2.1
16
89
10
52
44
26
0
29
1.55
96429681--96429896
111
1.9
114
87
3
321
40
11
8
39
1.71
96433260--96433367
9
11.3
10
66
20
52
60
0
3
35
1.21
96433260--96433344
9
9.0
9
73
20
59
64
0
3
31
1.10
96433260--96433398
19
7.3
18
67
19
61
60
0
4
34
1.22
96433255--96433337
28
2.9
29
84
10
100
65
0
4
30
1.14
96433287--96433401
38
3.1
36
75
13
108
60
0
4
34
1.23
96433261--96433357
28
3.5
28
73
10
74
61
0
4
34
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96433296--96433431
20
7.1
19
68
20
79
57
0
4
37
1.24
96433448--96433563
3
38.7
3
100
0
232
0
32
0
67
0.91
96433733--96433921
20
9.6
20
69
15
83
37
6
2
53
1.38
96433891--96433929
18
2.1
19
85
4
53
33
5
0
61
1.18
96433829--96433989
20
8.2
20
72
10
91
36
3
0
60
1.17
96433944--96434009
21
3.2
20
73
4
60
33
3
1
62
1.20
96438031--96438084
16
3.4
16
89
0
72
37
1
27
33
1.68
96438334--96438408
12
6.8
11
73
22
61
52
1
0
46
1.09
96438350--96438408
22
2.7
21
85
15
75
49
1
0
49
1.11
96438756--96438844
27
3.2
27
77
20
103
37
15
6
40
1.74
96440570--96440703
53
2.5
53
91
2
207
28
27
17
26
1.98
96446481--96446631
53
2.8
53
88
4
205
30
27
15
25
1.96
96453701--96453759
28
2.1
28
100
0
118
49
10
3
37
1.54
96454772--96454809
19
2.0
19
94
0
67
47
23
5
23
1.72
96457412--96457443
15
2.1
15
100
0
64
56
6
18
18
1.62
96459132--96459188
28
2.2
26
81
15
64
45
12
12
29
1.78
96462049--96462087
20
2.0
19
85
5
51
51
23
15
10
1.73
96475219--96475256
18
2.1
18
100
0
76
34
26
10
28
1.90
96486437--96486463
13
2.1
13
100
0
54
14
37
33
14
1.88
96506797--96506968
93
1.8
93
96
0
317
27
29
21
20
1.98
96506790--96506965
46
3.8
46
79
12
216
28
29
21
20
1.98
96514364--96514535
93
1.8
93
96
0
317
27
29
21
20
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96514357--96514532
46
3.8
46
79
12
216
28
29
21
20
1.98
96522023--96522053
5
6.2
5
100
0
62
38
19
19
22
1.93
96522212--96522248
13
2.8
14
84
12
51
78
16
0
5
0.93
96522305--96522705
219
1.9
210
85
5
561
55
20
5
17
1.62
96523760--96523826
30
2.2
30
97
0
125
55
4
5
34
1.45
96525914--96525946
9
3.7
9
95
0
57
30
18
12
39
1.87
96527221--96527275
11
4.9
11
80
12
51
27
1
0
70
0.97
96527221--96527294
30
2.5
31
78
10
82
24
4
1
70
1.13
96527236--96527275
17
2.4
16
88
12
55
25
2
0
72
0.97
96529403--96529609
47
4.3
47
80
6
184
29
28
16
25
1.97
96532120--96532207
6
14.8
6
84
7
81
15
6
4
72
1.22
96532120--96532212
12
7.8
12
82
8
91
16
6
4
73
1.21
96532120--96532199
18
4.4
18
82
6
99
16
6
3
73
1.18
96533147--96533178
5
6.6
5
92
7
57
81
0
18
0
0.70
96535550--96535596
20
2.4
20
89
3
69
42
10
6
40
1.65
96540062--96540177
51
2.3
51
84
3
144
27
20
6
45
1.74
96548105--96548134
14
2.1
14
100
0
60
66
13
0
20
1.24
96549207--96549236
15
2.0
15
100
0
60
46
0
13
40
1.43
96549261--96549308
20
2.5
20
86
10
64
25
6
2
66
1.26
96553424--96553472
16
2.9
16
78
6
53
30
2
0
67
1.02
96553432--96553473
3
14.7
3
81
18
54
33
0
0
66
0.92
96553433--96553485
17
3.2
16
77
15
54
35
1
0
62
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96553424--96553474
21
2.4
22
87
9
79
29
1
0
68
1.00
96553430--96553472
23
2.0
23
90
9
72
32
0
0
67
0.91
96553652--96553689
20
2.0
20
89
5
60
44
10
5
39
1.61
96559027--96559240
107
2.0
107
97
0
401
12
24
2
60
1.43
96559248--96559287
16
2.4
16
91
4
62
35
0
0
65
0.93
96559249--96559303
10
5.3
11
81
16
64
36
1
0
61
1.06
96559248--96559291
3
15.7
3
78
21
51
34
0
0
65
0.93
96559248--96559291
5
7.8
6
80
19
51
34
0
0
65
0.93
96559470--96559507
20
2.0
20
89
5
60
44
10
5
39
1.61
96560180--96560408
51
4.5
51
76
4
194
39
10
24
25
1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325