genome.fa.s3.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  147  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47261318--47261421	44	2.4	42	82	7	120	32	24	20	23	1.98
47263703--47263824	27	4.5	27	89	2	174	25	20	10	43	1.84
47263829--47263942	27	4.2	27	85	2	140	35	17	22	24	1.95
47263827--47263939	54	2.1	54	88	3	165	35	16	23	23	1.95
47264055--47264115	21	2.9	21	87	4	79	37	11	19	31	1.87
47264055--47264107	11	5.0	11	86	6	74	37	13	20	28	1.90
47264163--47264234	25	3.0	24	80	13	76	29	22	22	26	1.99
47285117--47285660	93	5.8	93	96	0	989	29	28	19	22	1.98
47301006--47301118	43	2.6	44	80	8	126	30	25	16	26	1.97
47315608--47315720	44	2.6	44	77	6	122	25	17	26	30	1.98
47318977--47319059	29	2.9	29	87	0	112	26	28	16	27	1.97
47326758--47326816	18	3.3	17	79	9	64	42	18	16	22	1.89
47327064--47327113	23	2.2	23	82	13	59	44	18	14	24	1.86
47327165--47327356	27	7.1	27	84	0	222	20	18	21	39	1.93
47327165--47327345	81	2.2	81	88	0	272	19	19	20	39	1.92
47342193--47342364	46	3.7	46	74	14	149	27	19	29	23	1.99
47342195--47342362	93	1.8	92	87	6	250	27	18	29	24	1.98
47342195--47342461	92	2.8	94	81	7	267	28	17	28	25	1.98
47342287--47342402	48	2.5	45	80	8	128	28	16	30	25	1.97
47358847--47358935	44	2.0	44	100	0	178	44	6	25	22	1.77
47364312--47364402	29	3.2	29	80	6	98	30	30	10	27	1.91
47370271--47370298	12	2.3	12	100	0	56	7	14	32	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47370752--47370812	21	2.9	20	72	11	50	27	1	26	44	1.64
47370762--47370812	22	2.4	22	75	18	63	27	1	25	45	1.64
47370804--47370843	14	2.9	14	92	0	62	17	0	47	35	1.48
47370811--47370854	21	2.1	21	83	8	54	18	0	50	31	1.47
47370884--47370923	7	5.6	7	91	5	53	25	0	40	35	1.56
47374620--47374660	22	1.9	21	85	5	55	43	0	0	56	0.99
47379342--47379453	43	2.6	43	85	0	152	29	27	17	25	1.98
47385419--47385443	13	1.9	13	100	0	50	36	0	24	40	1.55
47390897--47390935	19	2.1	19	95	0	69	15	5	0	79	0.90
47398395--47398447	23	2.3	23	96	0	97	24	30	30	15	1.95
47401626--47401654	14	2.0	15	93	6	51	24	20	6	48	1.74
47404081--47404209	43	3.0	42	79	9	120	22	18	25	33	1.97
47411336--47411469	42	3.2	42	78	11	148	31	29	16	22	1.96
47411300--47411458	44	3.7	44	78	13	177	29	28	18	23	1.97
47411308--47411469	86	1.9	85	86	6	229	30	29	17	23	1.97
47413607--47413658	27	2.0	26	84	3	68	34	21	26	17	1.95
47414254--47414307	27	2.0	27	85	3	74	35	20	22	22	1.96
47414297--47414408	54	2.1	54	79	3	118	28	19	18	33	1.96
47414327--47414506	27	6.7	26	85	5	200	25	19	17	37	1.93
47414337--47414506	80	2.1	81	86	5	238	25	19	17	37	1.93
47414337--47414506	54	3.2	54	86	6	238	25	19	17	37	1.93
47421132--47421191	27	2.3	26	85	2	75	35	20	23	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47421159--47421300	67	2.1	67	85	5	185	30	21	28	19	1.97
47425035--47425367	47	7.1	47	94	0	540	32	9	29	28	1.88
47425486--47425564	37	2.1	37	88	4	115	25	18	30	25	1.98
47427222--47427405	40	4.6	40	78	10	189	26	28	21	23	1.99
47427222--47427403	79	2.3	80	79	8	192	26	29	20	24	1.99
47429647--47429700	27	2.0	27	85	3	74	35	20	20	24	1.96
47429701--47429873	27	6.4	27	89	0	238	24	21	19	34	1.96
47429719--47429872	81	1.9	81	93	0	263	23	20	20	35	1.96
47432078--47432161	29	3.0	27	78	16	89	28	25	16	29	1.97
47432078--47432176	28	3.5	29	85	8	123	29	24	15	31	1.95
47432054--47432161	57	1.9	56	82	1	135	26	25	17	30	1.97
47434930--47435009	27	2.9	27	87	7	108	22	23	21	32	1.98
47446858--47446942	28	3.0	27	81	3	89	24	28	16	30	1.96
47447157--47447187	16	1.9	16	93	0	53	9	22	22	45	1.81
47450987--47451146	48	3.3	47	80	10	155	25	18	30	26	1.98
47453031--47453065	18	2.1	17	89	10	54	17	31	37	14	1.89
47454123--47454270	40	3.7	40	80	5	147	35	26	12	25	1.92
47457723--47458771	48	21.9	48	94	1	1759	35	6	27	30	1.82
47458475--47458555	28	3.2	28	60	26	70	33	7	29	29	1.85
47458667--47458747	28	3.2	28	60	26	70	35	6	29	28	1.81
47460256--47460375	43	2.8	43	84	5	136	31	26	15	26	1.95
47467094--47467228	52	2.8	46	78	12	153	28	28	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47476627--47476690	32	2.0	33	84	9	87	26	20	25	28	1.99
47476628--47476722	34	2.9	32	78	10	93	25	23	24	27	2.00
47478727--47478868	27	5.3	27	83	5	72	30	24	8	36	1.85
47478744--47478991	27	9.2	27	84	3	293	27	22	9	40	1.84
47478996--47479191	27	7.3	27	82	2	232	35	18	19	25	1.95
47479390--47479476	27	3.3	26	88	4	120	17	22	24	35	1.95
47479594--47479795	6	33.3	6	72	13	146	21	16	12	48	1.80
47479594--47479774	85	2.1	85	91	0	299	22	17	12	48	1.80
47479611--47479795	30	6.3	30	79	12	179	21	16	12	49	1.78
47479783--47479816	18	1.9	17	88	5	50	23	11	11	52	1.70
47481791--47482064	27	10.2	27	80	3	284	26	20	10	42	1.84
47481792--47482064	81	3.4	81	82	6	347	26	20	10	42	1.84
47481790--47482064	54	5.1	55	79	6	321	26	20	10	42	1.84
47482069--47482259	27	7.2	27	76	9	178	35	16	20	27	1.94
47482077--47482258	79	2.3	79	83	5	217	35	16	20	26	1.94
47482069--47482260	53	3.6	53	77	8	203	35	17	20	27	1.94
47482458--47482542	27	3.3	26	85	8	102	17	22	24	35	1.95
47482679--47482931	6	41.8	6	76	14	236	20	16	14	49	1.80
47482660--47482931	85	3.1	85	90	6	445	20	16	13	48	1.80
47482660--47482952	30	9.9	30	79	11	275	20	17	13	48	1.80
47485321--47485492	93	1.8	93	91	0	281	28	29	20	21	1.98
47485313--47485488	46	3.8	46	78	10	196	29	28	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47487877--47487937	14	4.3	14	72	12	52	62	11	16	9	1.54
47487881--47487963	29	2.9	29	79	13	91	57	14	16	10	1.64
47490893--47491064	46	3.8	43	75	16	161	28	29	19	22	1.98
47490894--47491069	43	3.9	43	75	12	138	28	29	19	22	1.98
47505399--47505528	49	2.6	51	83	6	183	34	13	13	38	1.84
47509369--47509464	29	3.3	29	91	0	138	30	29	15	25	1.96
47514056--47514228	46	3.7	46	76	10	172	31	27	19	21	1.97
47514106--47514247	46	3.1	45	71	18	114	30	28	17	23	1.97
47516141--47516242	29	3.6	29	81	1	125	27	17	27	27	1.98
47518409--47518591	79	2.3	80	82	7	221	25	27	22	24	2.00
47518388--47518591	40	5.1	40	81	8	229	25	27	22	25	2.00
47519719--47519833	56	2.1	56	100	0	230	22	22	9	45	1.81
47528553--47528587	16	2.2	16	89	0	52	62	14	8	14	1.53
47528798--47528883	28	3.0	28	77	9	93	30	15	27	26	1.96
47531865--47532036	93	1.8	93	96	0	317	27	29	21	20	1.98
47531858--47532033	46	3.8	46	79	12	216	28	29	21	20	1.98
47563669--47563849	40	4.6	40	90	3	278	28	25	22	23	1.99
47563669--47563849	79	2.3	79	92	2	292	28	25	22	23	1.99
47570320--47570853	262	2.0	262	97	0	998	35	23	11	29	1.89
47572187--47572262	25	3.0	25	98	0	143	25	27	18	28	1.98
47572338--47572506	46	3.6	45	79	10	171	23	29	18	28	1.97
47572285--47572560	94	2.9	94	83	7	332	23	29	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47579443--47579472	15	2.0	15	93	0	51	50	33	13	3	1.58
47580362--47580434	36	2.0	36	100	0	146	35	10	24	28	1.90
47585166--47585194	9	3.2	9	100	0	58	0	44	0	55	0.99
47585166--47585201	18	2.0	18	88	0	54	2	47	0	50	1.15
47587153--47587543	47	8.3	47	91	1	579	32	9	30	26	1.89
47594379--47594474	46	2.1	46	94	0	165	35	17	8	38	1.80
47611692--47611833	37	3.8	37	95	0	239	26	30	18	24	1.98
47611978--47612663	48	14.0	48	91	3	1084	31	25	6	36	1.81
47611978--47612663	98	7.0	97	94	1	1142	31	25	6	36	1.81
47619939--47620096	43	3.7	42	74	9	131	25	18	24	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325