genome.fa.s3.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  174  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56491981--56492059	37	2.1	37	88	0	113	24	17	31	26	1.97
56494172--56494289	40	3.0	40	93	0	200	31	29	16	22	1.96
56498913--56498972	21	2.9	19	74	16	57	15	31	26	26	1.95
56499882--56499973	48	1.9	48	86	0	130	30	23	19	26	1.98
56504873--56504898	7	3.7	7	100	0	52	11	15	0	73	1.11
56507005--56507064	25	2.4	25	83	10	79	46	3	0	50	1.18
56511257--56511317	28	2.2	28	87	0	86	27	26	22	22	1.99
56511460--56511536	27	2.9	27	80	0	73	33	20	25	19	1.96
56517178--56517308	50	2.8	48	77	14	137	25	29	17	27	1.97
56544261--56544371	13	8.3	13	69	26	65	59	0	4	36	1.18
56544261--56544376	20	5.8	19	80	14	128	60	0	4	35	1.17
56544315--56544375	9	6.1	9	74	20	50	59	0	3	37	1.14
56547808--56547869	31	2.0	31	96	0	115	48	8	19	24	1.75
56551017--56551129	43	2.7	43	84	6	158	29	15	24	30	1.96
56553691--56553753	29	2.2	29	85	2	83	30	30	14	25	1.95
56555709--56556081	48	7.8	48	91	0	557	34	6	27	31	1.83
56556125--56556227	37	2.8	37	93	0	170	22	22	29	26	1.99
56558176--56558477	40	7.6	40	88	1	435	23	21	29	25	1.99
56558653--56558703	25	2.0	25	81	7	59	33	13	31	21	1.92
56560643--56561015	48	7.8	48	92	0	593	34	6	27	31	1.82
56568595--56568765	91	1.9	92	93	1	299	29	29	20	20	1.98
56568589--56568765	46	3.9	43	76	14	160	29	29	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56571113--56571190	14	5.4	15	72	18	58	60	14	15	10	1.59
56571114--56571199	29	3.0	28	82	12	97	58	16	15	10	1.63
56574092--56574264	93	1.9	93	90	4	278	30	28	19	21	1.97
56574085--56574260	46	3.8	46	74	16	175	31	28	18	21	1.97
56580603--56580654	27	2.0	26	84	3	68	17	26	21	34	1.95
56582619--56582746	42	3.0	42	76	13	134	30	25	17	26	1.98
56586091--56586247	27	5.8	27	87	0	188	29	23	8	38	1.84
56586226--56586418	27	7.2	27	78	8	178	40	20	7	30	1.81
56586064--56586258	54	3.6	54	78	0	165	31	24	8	36	1.85
56586064--56586258	81	2.4	81	78	0	210	31	24	8	36	1.85
56586240--56586418	54	3.3	53	84	3	223	42	19	7	30	1.79
56586226--56586420	81	2.4	80	86	4	250	40	21	7	30	1.81
56586288--56586446	54	2.9	54	80	10	141	42	20	6	30	1.78
56586401--56586500	27	3.6	27	77	7	85	44	20	7	29	1.77
56586457--56586508	27	1.9	27	88	7	79	40	11	11	36	1.78
56586562--56586653	27	3.4	27	87	3	123	33	19	26	20	1.96
56587902--56588005	20	5.2	20	95	0	181	34	11	21	32	1.89
56587899--56588005	40	2.7	40	98	0	205	34	11	21	32	1.89
56588052--56588268	23	9.1	23	84	6	272	28	20	20	30	1.98
56588058--56588293	121	2.0	119	82	6	289	27	19	21	30	1.98
56588484--56588547	31	2.1	31	87	0	92	39	14	23	23	1.91
56589473--56589527	21	2.6	21	85	0	83	16	30	36	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56592782--56592997	46	4.7	46	78	13	205	22	29	20	27	1.98
56596092--56596148	9	5.9	9	73	15	51	35	8	21	35	1.84
56596090--56596160	20	3.5	20	94	0	124	35	11	21	32	1.89
56596101--56596155	11	5.4	11	70	16	55	36	12	20	30	1.90
56596207--56596373	23	7.1	23	92	2	262	28	22	20	27	1.99
56596206--56596395	24	8.0	23	89	5	265	28	22	21	26	1.99
56596206--56596395	47	4.0	47	88	4	267	28	22	21	26	1.99
56596588--56596651	31	2.1	31	87	0	92	37	15	21	25	1.93
56598061--56598179	41	2.9	41	87	5	168	26	27	21	24	1.99
56598434--56598540	27	3.9	27	82	11	112	30	8	18	42	1.80
56598497--56598674	27	6.7	26	75	5	133	26	8	23	41	1.83
56598498--56598647	80	1.9	81	83	4	196	27	9	22	40	1.84
56598602--56598699	27	3.7	26	80	5	106	26	7	23	42	1.79
56598431--56598699	54	5.0	54	71	4	184	29	9	21	39	1.85
56598422--56598699	107	2.6	109	76	2	274	29	9	21	39	1.85
56598693--56598844	53	2.8	53	85	4	191	27	23	17	32	1.96
56598691--56598844	80	1.9	81	88	4	231	27	22	16	33	1.96
56598688--56598844	27	5.9	27	86	5	187	27	22	16	33	1.95
56602854--56602878	2	12.5	2	100	0	50	0	48	0	52	1.00
56608404--56608551	42	3.5	41	78	6	154	29	16	25	29	1.96
56609686--56609720	18	2.0	18	88	5	54	28	2	22	45	1.67
56612134--56612250	47	2.5	47	80	9	130	35	20	23	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56612226--56612345	47	2.6	47	95	0	213	36	15	24	24	1.93
56612395--56612479	30	2.8	31	76	5	93	29	16	25	28	1.97
56616828--56617477	47	13.6	47	94	1	1012	33	8	29	28	1.86
56616828--56617477	239	2.7	239	93	2	1074	33	8	29	28	1.86
56619734--56620074	40	9.1	40	84	10	409	25	19	29	25	1.99
56619734--56620074	79	4.5	77	84	10	422	25	19	29	25	1.99
56692491--56692532	21	2.0	21	100	0	84	28	4	14	52	1.62
56692812--56692995	39	4.7	40	78	9	182	24	21	27	26	1.99
56692869--56693018	78	1.9	78	81	8	180	26	20	26	27	1.99
56697476--56697964	47	10.3	47	93	1	800	32	8	29	29	1.87
56697477--56697964	239	2.1	237	94	1	856	32	8	29	29	1.87
56700852--56700989	40	3.5	39	81	6	154	26	28	22	23	1.99
56702246--56702280	16	2.2	16	89	0	52	0	17	0	82	0.66
56707532--56707748	40	5.5	39	82	7	208	23	27	23	24	2.00
56707557--56707781	120	1.9	119	82	6	285	24	27	22	25	2.00
56707557--56707781	40	5.7	40	83	1	240	24	27	22	25	2.00
56711246--56711411	46	3.6	46	78	8	192	22	19	27	30	1.98
56711232--56711403	93	1.8	93	88	0	263	23	20	26	29	1.99
56713211--56713267	26	2.2	26	80	3	60	28	19	19	33	1.96
56713529--56713556	8	3.5	8	100	0	56	0	21	21	57	1.41
56721431--56721457	12	2.2	12	100	0	54	51	7	0	40	1.30
56721904--56722001	27	3.5	28	90	2	135	26	13	28	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56721932--56722014	27	3.0	27	87	5	96	30	12	25	32	1.92
56723541--56723751	40	5.2	40	88	5	291	25	27	23	23	2.00
56723541--56723751	83	2.6	80	87	5	291	25	27	23	23	2.00
56729399--56729425	14	1.9	14	100	0	54	25	37	22	14	1.93
56731919--56731953	15	2.3	15	90	0	52	11	17	8	62	1.52
56734711--56734801	46	2.0	46	93	0	155	25	20	24	29	1.99
56737884--56738006	47	2.6	46	81	14	153	29	18	29	22	1.98
56737881--56738150	94	2.8	94	78	7	235	27	18	28	25	1.98
56739329--56739368	20	2.0	21	85	14	57	15	37	25	22	1.93
56744930--56744974	17	2.7	17	96	3	83	37	0	11	51	1.38
56749272--56749493	40	5.6	40	90	1	340	23	22	25	28	1.99
56752193--56752240	22	2.0	25	84	11	66	56	29	6	8	1.53
56752601--56752828	41	5.5	41	73	10	149	25	17	20	36	1.94
56752711--56752836	44	2.9	44	75	8	107	23	16	19	39	1.92
56769070--56769109	18	2.2	18	100	0	80	75	0	25	0	0.81
56770004--56770067	32	2.0	32	90	0	101	42	3	7	46	1.48
56770208--56770239	16	1.9	17	93	6	57	53	3	0	43	1.16
56771824--56771867	22	2.0	22	90	0	70	34	15	15	34	1.90
56782889--56782922	14	2.4	14	95	5	59	82	0	0	17	0.67
56784844--56785020	48	3.7	48	84	6	234	28	20	23	27	1.99
56784837--56785114	96	3.0	96	79	14	300	29	20	23	26	1.99
56791330--56791513	68	2.8	64	86	5	237	30	16	27	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56791334--56791513	63	2.7	66	86	5	233	30	16	27	25	1.97
56795856--56795964	50	2.2	50	90	8	168	29	14	30	25	1.95
56802039--56802142	33	3.2	32	78	13	113	36	13	23	26	1.92
56802144--56802260	31	3.8	31	90	0	189	25	17	29	27	1.98
56802350--56802414	27	2.4	27	92	0	103	38	13	26	21	1.91
56802469--56802542	34	2.2	34	90	0	112	27	13	28	31	1.94
56808018--56808052	6	5.8	6	86	0	52	80	0	2	17	0.84
56808048--56808082	16	2.2	16	100	0	70	60	22	5	11	1.52
56813281--56813355	38	2.0	38	100	0	150	40	9	29	21	1.84
56815267--56815414	55	2.8	53	78	4	154	17	23	19	39	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325