genome.fa.s3.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  143  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46183494--46183808	27	11.7	27	83	4	361	25	18	19	36	1.94
46183494--46183808	54	5.9	54	87	0	409	25	18	19	36	1.94
46183494--46183808	81	3.9	81	87	0	427	25	18	19	36	1.94
46183792--46184022	27	8.7	27	76	7	204	29	10	20	39	1.86
46183796--46184022	80	2.8	80	85	4	289	29	10	19	40	1.85
46183793--46184022	107	2.2	107	82	7	279	29	10	20	39	1.86
46183793--46184022	53	4.3	52	74	10	189	29	10	20	39	1.86
46184995--46185063	31	2.3	31	94	2	122	46	11	13	28	1.78
46193676--46193701	13	2.0	13	100	0	52	23	15	7	53	1.67
46203950--46203997	22	2.2	22	88	0	69	12	16	33	37	1.86
46206228--46206507	39	7.2	39	81	5	309	32	18	30	18	1.95
46206228--46206507	78	3.6	77	81	5	341	32	18	30	18	1.95
46221918--46222075	51	3.1	50	88	3	235	28	22	17	31	1.96
46223746--46223861	37	3.1	37	94	0	196	25	32	18	22	1.97
46223980--46224392	47	8.7	47	92	1	621	28	30	9	32	1.88
46233510--46233543	16	2.2	16	89	5	52	50	14	8	26	1.72
46235254--46235308	20	2.8	20	97	0	101	12	25	20	41	1.87
46237684--46237841	81	2.0	81	96	0	289	28	14	13	43	1.83
46239266--46239291	13	2.0	13	100	0	52	38	23	0	38	1.55
46243205--46243289	42	2.0	42	100	0	170	55	9	14	21	1.67
46246794--46246877	40	2.1	40	90	0	132	19	23	25	32	1.97
46259251--46259371	57	2.1	57	84	1	152	47	6	19	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46260799--46260938	70	2.0	69	91	1	226	42	16	4	37	1.68
46263066--46263117	19	2.7	21	80	17	67	40	28	17	13	1.87
46265422--46265530	43	2.6	43	82	4	141	30	26	18	24	1.98
46266023--46266079	31	1.9	30	82	10	73	31	21	3	43	1.69
46268219--46268383	6	25.7	6	68	22	54	73	2	6	17	1.16
46268219--46268268	20	2.5	20	81	12	59	80	4	2	14	0.95
46268239--46268383	14	9.7	14	68	19	53	73	1	7	17	1.14
46268293--46268354	33	1.9	33	84	12	85	70	0	8	20	1.12
46268300--46268372	3	23.7	3	71	15	51	71	0	5	23	1.07
46268298--46268374	14	5.3	14	74	13	59	72	0	5	22	1.04
46268309--46268372	33	1.9	33	84	6	85	70	0	6	23	1.10
46271073--46271201	50	2.5	51	88	5	199	36	16	21	25	1.94
46271177--46271387	31	6.8	31	92	2	325	27	20	27	25	1.99
46271412--46271577	47	3.7	46	84	7	180	29	15	25	28	1.96
46271506--46271620	42	2.7	43	89	4	171	30	14	26	27	1.95
46275846--46275884	16	2.3	16	86	8	51	76	5	0	17	0.96
46275846--46275886	17	2.3	18	84	12	50	75	4	0	19	0.98
46277473--46277529	30	1.9	30	89	3	89	31	14	26	28	1.94
46277873--46278141	46	5.8	45	76	11	172	28	18	29	22	1.98
46279701--46279798	27	3.5	28	88	5	128	32	28	13	25	1.93
46282395--46282444	21	2.4	21	90	6	75	14	22	30	34	1.93
46289041--46289175	43	3.1	44	80	6	175	25	14	29	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46289472--46289680	38	5.5	38	84	2	267	22	21	24	32	1.98
46289673--46289798	45	2.8	45	84	2	164	21	24	26	27	1.99
46297931--46298313	38	10.1	38	92	0	633	20	21	25	32	1.98
46299715--46299849	43	3.1	44	82	8	186	24	16	29	29	1.96
46300119--46300293	38	4.6	38	89	2	228	22	22	25	29	1.99
46300153--46300316	38	4.3	38	89	1	222	21	20	25	31	1.98
46300309--46300433	45	2.8	45	91	2	198	20	23	29	27	1.98
46309369--46309406	20	1.9	20	94	0	67	42	23	2	31	1.68
46309555--46309607	24	2.2	24	83	12	65	35	18	24	20	1.95
46309567--46309620	24	2.2	24	83	6	65	33	24	24	18	1.97
46328138--46328163	13	2.0	13	100	0	52	46	0	7	46	1.31
46328144--46328218	33	2.3	34	84	9	102	49	13	6	30	1.67
46328743--46328810	18	3.7	19	70	16	54	11	13	2	72	1.24
46328724--46328804	36	2.2	36	81	12	103	9	16	2	71	1.23
46328859--46328921	22	3.0	20	76	17	63	41	0	6	52	1.27
46328875--46328929	21	2.4	23	85	14	78	38	0	5	56	1.23
46328871--46328929	22	2.6	22	82	12	68	38	0	5	55	1.22
46328884--46328961	35	2.2	32	85	14	102	39	0	1	58	1.06
46328898--46328961	35	1.9	34	90	9	105	39	0	1	59	1.07
46328893--46328976	20	4.5	19	73	19	79	40	0	1	58	1.06
46328906--46328963	13	4.8	13	71	28	56	39	0	1	58	1.08
46328925--46328985	20	3.0	21	88	9	90	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46329044--46329106	21	2.8	21	79	18	65	34	0	3	61	1.12
46329191--46329258	18	4.2	15	76	21	66	54	0	1	44	1.09
46329196--46329256	18	3.4	18	78	15	72	49	0	1	49	1.10
46329706--46329769	20	3.2	20	65	8	58	35	9	3	51	1.50
46329706--46329791	40	2.2	40	87	4	120	37	8	2	52	1.44
46329847--46329995	71	2.1	72	94	1	264	52	4	2	41	1.32
46329820--46329951	18	7.3	19	66	16	50	54	2	2	40	1.25
46330051--46330120	17	4.0	17	74	9	61	54	1	1	42	1.18
46331937--46332039	29	3.4	30	79	4	109	24	24	21	30	1.99
46335313--46335367	12	4.0	13	75	25	51	50	1	0	47	1.11
46335365--46335399	12	3.0	11	84	15	52	62	0	0	37	0.95
46335365--46335399	13	2.8	13	91	8	56	62	0	0	37	0.95
46335343--46335406	33	1.9	34	84	15	89	60	0	0	39	0.97
46335446--46335555	29	3.6	29	78	19	84	55	1	0	42	1.10
46335337--46335635	135	2.2	134	81	7	352	54	2	2	41	1.26
46335587--46335656	21	3.3	21	76	21	74	54	0	0	45	0.99
46335590--46335650	21	2.9	21	85	11	88	57	0	0	42	0.98
46335596--46335659	22	3.0	21	88	9	85	59	0	0	40	0.97
46345581--46345622	18	2.4	18	84	4	50	33	7	4	54	1.49
46347289--46347321	12	2.8	12	90	0	57	24	18	0	57	1.40
46356766--46356807	21	2.0	20	90	4	66	30	28	16	23	1.96
46356772--46356816	21	2.1	21	91	0	72	28	28	13	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46362551--46362826	48	5.9	47	76	11	235	25	18	32	23	1.97
46366531--46366602	34	2.1	34	82	10	85	27	13	23	34	1.93
46369209--46369355	40	3.7	40	89	1	215	23	21	25	29	1.99
46369208--46369428	40	5.6	40	82	5	198	23	21	26	28	1.99
46380729--46380884	37	4.2	37	86	2	197	17	16	28	37	1.91
46384669--46384759	27	3.4	26	83	6	92	31	21	17	28	1.96
46384696--46384768	27	2.7	27	77	12	78	35	21	13	28	1.92
46384776--46384865	26	3.5	26	81	0	90	33	26	11	28	1.91
46384829--46384928	28	3.6	28	82	5	107	24	24	19	33	1.97
46386045--46386077	7	4.9	7	96	3	59	42	0	0	57	0.98
46386341--46386382	21	2.0	21	85	0	57	45	4	11	38	1.62
46387379--46387427	17	2.8	18	84	6	64	34	18	6	40	1.75
46392261--46392367	40	2.7	39	78	13	110	45	3	16	33	1.65
46392303--46392366	13	4.8	13	77	12	58	50	3	14	32	1.58
46409645--46409669	13	1.9	13	100	0	50	32	4	24	40	1.73
46410789--46410912	42	2.9	42	78	4	124	27	16	23	33	1.95
46410809--46410912	43	2.5	42	77	12	113	25	16	24	33	1.96
46424341--46424572	40	5.8	41	81	4	260	25	20	28	26	1.99
46424341--46424592	120	2.1	120	82	3	303	24	19	27	27	1.99
46424341--46424572	80	2.9	80	86	2	315	25	20	28	26	1.99
46432456--46432707	40	6.3	40	83	5	298	23	20	28	26	1.99
46432456--46432707	120	2.1	120	85	3	348	23	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46432456--46432687	80	2.9	80	89	3	360	23	21	29	25	1.99
46440822--46440860	19	2.1	19	85	9	53	38	17	0	43	1.50
46441003--46441048	22	2.1	22	100	0	92	36	17	4	41	1.69
46452425--46452488	32	2.0	32	100	0	128	18	3	37	40	1.67
46454056--46454537	48	10.0	48	88	0	687	29	31	16	22	1.96
46464086--46464286	55	3.7	54	79	9	205	34	17	25	21	1.95
46464089--46464286	108	1.8	110	89	4	312	34	17	26	21	1.96
46464528--46464558	16	1.9	16	93	0	53	41	0	22	35	1.54
46465568--46465773	55	3.8	53	75	10	175	35	16	24	23	1.95
46465571--46465768	108	1.8	110	85	4	285	35	17	25	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325