genome.fa.s3.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  95  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30534570--30534647	40	2.0	39	87	2	111	29	25	16	28	1.97
30547639--30547784	37	3.9	37	97	0	256	26	31	19	23	1.98
30547991--30548184	47	4.1	47	89	0	280	26	28	10	33	1.90
30551652--30551774	58	2.1	58	93	3	212	32	13	26	26	1.94
30555166--30555434	46	5.8	45	78	14	289	21	19	28	29	1.98
30555163--30555427	93	2.8	93	94	0	476	21	20	29	29	1.98
30558599--30558628	13	2.3	13	94	0	51	36	26	26	10	1.88
30573423--30573486	27	2.4	28	84	10	80	42	17	20	20	1.90
30574088--30574129	22	1.9	22	85	0	57	19	4	35	40	1.72
30577565--30577718	42	3.6	42	83	3	202	29	22	16	32	1.95
30585831--30586020	49	3.8	49	78	8	177	28	27	17	25	1.98
30588157--30588260	42	2.5	42	81	6	122	29	21	14	34	1.93
30606460--30606504	23	1.9	24	82	13	58	71	2	17	8	1.23
30607997--30608179	79	2.3	81	84	7	232	24	22	27	25	2.00
30607998--30608181	40	4.6	40	83	9	216	23	22	28	25	2.00
30608050--30608214	79	2.1	79	84	6	210	25	21	27	25	1.99
30611743--30611781	13	2.9	13	84	3	51	28	2	10	58	1.44
30613194--30613369	40	4.5	39	86	7	230	24	22	27	25	2.00
30613194--30613369	79	2.2	79	89	4	266	24	22	27	25	2.00
30619782--30619820	13	2.9	13	84	3	51	28	2	10	58	1.44
30621252--30621417	40	4.2	40	87	2	228	24	22	27	26	2.00
30623856--30623943	30	3.0	30	80	11	92	10	18	17	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30623865--30623944	15	5.4	14	75	7	61	10	18	15	56	1.66
30625868--30626043	46	3.8	46	77	4	183	22	19	28	29	1.98
30625864--30626035	93	1.8	93	89	0	272	22	20	29	28	1.98
30628390--30628433	13	3.5	13	75	6	54	18	29	27	25	1.98
30628390--30628441	25	2.1	25	100	0	104	19	30	26	23	1.98
30635235--30635319	27	3.2	26	81	5	89	17	22	23	36	1.95
30635252--30635319	28	2.5	26	81	6	82	17	20	22	39	1.92
30636290--30636320	16	2.0	16	93	6	55	58	12	3	25	1.50
30641879--30641911	16	2.1	16	100	0	66	6	36	6	51	1.51
30644211--30644333	22	5.3	22	62	21	63	25	29	11	34	1.91
30644183--30644544	47	7.6	47	93	3	573	28	28	8	34	1.86
30644183--30644544	96	3.8	94	92	3	573	28	28	8	34	1.86
30644402--30644543	49	3.1	42	86	13	130	30	27	8	33	1.86
30646000--30646119	56	2.1	56	93	3	206	22	24	10	42	1.85
30647192--30647273	27	3.0	26	80	5	83	18	24	21	35	1.96
30647214--30647266	28	1.9	27	88	3	79	18	24	18	37	1.94
30658803--30658962	40	4.0	40	96	0	284	28	27	21	22	1.99
30667624--30667838	106	2.0	106	94	1	378	28	12	18	40	1.86
30667988--30668053	34	1.9	34	90	0	105	27	4	25	42	1.74
30668398--30668449	25	2.1	25	96	0	95	28	9	11	50	1.70
30669722--30669765	18	2.5	19	85	10	58	54	4	2	38	1.33
30669722--30669779	17	3.3	18	79	13	59	51	3	1	43	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30676285--30676380	15	6.6	14	71	25	51	57	3	1	38	1.22
30676319--30676369	5	10.2	5	95	0	93	58	0	1	39	1.09
30679027--30679171	6	23.3	6	71	21	104	48	15	15	20	1.80
30679041--30679137	25	3.9	25	80	11	101	47	15	17	19	1.83
30679038--30679171	31	4.3	31	84	6	148	49	14	15	20	1.80
30679308--30679409	27	3.8	26	87	5	123	37	21	23	17	1.94
30679568--30679629	22	2.8	23	82	7	74	35	20	20	22	1.96
30680059--30680307	27	9.3	27	87	0	347	25	21	20	33	1.97
30680356--30680420	27	2.4	27	86	0	94	32	10	18	38	1.85
30680353--30680658	81	3.8	80	80	3	301	31	8	20	38	1.84
30680399--30680658	27	9.6	27	84	0	331	31	8	20	38	1.83
30680398--30680658	54	4.8	54	87	1	380	32	8	20	38	1.83
30685071--30685243	46	3.7	46	78	13	210	21	21	27	28	1.99
30685068--30685238	93	1.8	93	96	0	315	21	21	28	28	1.99
30688198--30688253	15	3.7	15	88	7	87	12	16	10	60	1.58
30690649--30690821	46	3.7	46	78	13	210	21	21	27	28	1.99
30690646--30690816	93	1.8	93	96	0	315	21	21	28	28	1.99
30692981--30693053	21	3.5	21	81	7	85	19	34	24	21	1.96
30700412--30700467	16	3.5	16	82	0	58	50	5	12	32	1.63
30700739--30700785	16	2.9	16	78	12	51	40	0	0	59	0.97
30700739--30700771	15	2.1	16	88	5	50	39	0	0	60	0.97
30716175--30716418	49	4.9	49	82	4	301	25	17	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30716177--30716405	100	2.3	99	87	5	320	25	17	27	30	1.97
30718426--30718560	51	2.9	45	76	15	141	25	19	26	28	1.99
30740254--30740319	34	2.0	33	88	8	98	25	19	24	30	1.98
30752591--30752697	37	2.9	36	77	6	115	43	14	14	26	1.85
30755015--30755196	40	4.6	40	86	3	226	29	24	21	24	1.99
30755015--30755196	80	2.3	80	87	4	253	29	24	21	24	1.99
30763200--30763423	40	5.6	40	90	1	344	28	25	23	23	2.00
30765088--30765186	28	3.5	29	86	9	125	27	15	28	29	1.96
30773062--30773130	28	2.4	28	88	7	95	27	13	28	30	1.94
30773062--30773158	26	3.5	29	81	14	107	27	14	27	29	1.95
30776641--30776710	34	2.1	34	97	0	131	37	25	7	30	1.83
30778322--30778451	64	2.0	65	96	1	244	49	14	15	20	1.80
30779322--30779378	22	2.6	22	78	10	64	73	0	7	19	1.05
30779550--30779594	13	3.5	13	80	14	58	55	0	42	2	1.12
30783453--30783638	79	2.3	80	79	9	209	25	27	22	24	2.00
30783459--30783638	40	4.5	39	80	11	179	24	27	22	25	2.00
30791535--30791717	79	2.3	81	85	7	241	25	27	22	24	2.00
30791514--30791717	40	5.1	40	83	8	247	25	27	22	24	1.99
30796218--30796256	16	2.5	15	84	8	51	17	2	10	69	1.28
30798833--30798957	6	20.3	6	70	16	78	50	14	17	17	1.78
30798859--30798930	19	3.9	18	78	12	83	48	16	19	15	1.81
30798878--30798957	25	3.2	25	80	5	92	50	15	16	18	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30798817--30798934	43	2.8	41	78	11	112	50	15	16	16	1.78
30798842--30798935	37	2.5	37	87	0	134	50	14	19	15	1.79
30799103--30799275	67	2.5	69	78	9	199	32	20	26	20	1.97
30799121--30799311	67	2.8	67	87	3	247	32	21	26	18	1.97
30799874--30799927	27	2.0	27	85	3	74	35	22	22	20	1.96
30799935--30800056	54	2.3	54	88	2	174	27	19	18	34	1.95
30799935--30800068	27	5.0	27	80	1	144	26	18	18	35	1.94
30800089--30800311	27	8.3	27	86	1	205	31	7	19	41	1.79
30800090--30800311	81	2.8	81	82	3	243	31	7	18	41	1.79
30802260--30802384	6	20.3	6	68	19	71	49	12	18	19	1.79
30802286--30802353	19	3.6	19	76	11	77	50	13	19	17	1.78
30802320--30802384	25	2.6	25	85	0	85	47	12	18	21	1.81
30802269--30802362	37	2.5	37	87	0	134	50	12	19	18	1.78
30802281--30802384	31	3.4	31	74	12	97	49	12	19	19	1.79
30803277--30803414	27	5.1	27	78	4	145	26	19	18	35	1.95
30803277--30803414	54	2.6	54	85	1	179	26	19	18	35	1.95
30803453--30803657	27	7.6	27	82	4	202	32	7	19	40	1.80
30803452--30803666	54	4.0	54	81	5	229	32	7	19	40	1.81
30811412--30811474	31	2.0	31	100	0	126	36	25	15	22	1.94
30832884--30832941	30	1.9	30	89	0	89	29	32	20	17	1.95
30835476--30835505	15	2.1	14	93	6	51	23	10	0	66	1.21
30838680--30838726	19	2.6	18	83	10	51	2	31	0	65	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30839033--30839128	3	31.0	3	73	10	77	31	5	4	59	1.38
30839033--30839142	44	2.5	43	75	7	114	30	7	3	59	1.42
30840724--30840785	15	3.9	15	74	17	54	17	3	1	77	0.98
30846180--30846219	14	2.9	14	84	0	53	47	10	0	42	1.37
30846976--30847012	18	2.1	18	100	0	74	40	32	0	27	1.57
30854747--30854805	27	2.2	26	82	11	75	37	20	22	20	1.95
30854906--30854955	26	1.9	26	87	0	73	30	14	22	34	1.93
30856642--30856700	28	2.2	27	84	6	75	61	18	0	20	1.35
30856667--30856700	9	3.8	9	92	0	50	61	23	0	14	1.33
30862448--30862562	27	4.3	26	84	7	133	35	20	22	21	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325