genome.fa.s3.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  200  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64824016--64824062	25	2.0	25	83	8	62	53	4	14	27	1.60
64825305--64825426	45	2.7	45	92	2	192	29	25	21	23	1.99
64828736--64828869	47	2.9	47	79	0	160	26	23	15	33	1.95
64830733--64830848	57	2.0	57	83	6	146	31	15	20	32	1.94
64832970--64833011	21	2.0	21	86	9	59	11	7	7	73	1.23
64841460--64841509	25	2.0	25	100	0	100	36	4	28	32	1.76
64847916--64847968	9	5.4	9	75	16	52	32	9	20	37	1.85
64847910--64847976	20	3.3	20	89	0	107	32	11	20	34	1.90
64848026--64848143	24	5.0	24	86	6	152	30	20	22	27	1.98
64848337--64848400	31	2.1	31	87	0	92	35	14	23	26	1.93
64854439--64854494	11	5.5	11	71	16	57	35	12	19	32	1.89
64854428--64854494	20	3.3	20	93	0	116	34	11	20	32	1.90
64854544--64854662	24	5.0	24	82	5	143	29	22	22	25	1.99
64854856--64854919	31	2.1	31	87	0	92	37	15	21	25	1.93
64867738--64868003	48	5.6	48	80	4	290	27	28	18	26	1.98
64874473--64874497	8	3.1	8	100	0	50	24	0	0	76	0.80
64875136--64875168	14	2.4	14	95	5	59	39	6	0	54	1.25
64875236--64875267	16	1.9	17	93	6	57	31	0	3	65	1.08
64887498--64887535	19	2.0	19	94	0	67	44	5	15	34	1.69
64887859--64887883	7	3.6	7	100	0	50	28	0	0	72	0.86
64888190--64888218	14	2.0	15	93	6	51	68	6	20	3	1.27
64889080--64889119	13	2.9	14	85	7	55	62	0	10	27	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64890006--64890035	7	4.3	7	100	0	60	46	40	0	13	1.43
64890743--64890846	26	4.0	26	91	0	163	34	7	22	35	1.83
64898267--64898537	43	6.3	43	90	0	389	26	16	26	29	1.97
64898496--64898646	56	2.7	56	89	2	223	26	13	25	33	1.94
64898595--64898685	43	2.1	43	85	0	119	26	12	27	34	1.92
64898538--64898744	99	2.1	99	82	1	254	25	14	27	32	1.94
64900849--64900981	31	4.3	31	94	0	221	30	24	16	28	1.97
64901192--64901243	24	2.2	24	86	3	70	28	21	19	30	1.97
64901200--64901293	25	3.8	25	88	1	136	26	23	24	25	2.00
64902102--64902203	27	3.8	27	72	14	84	24	19	18	37	1.94
64902217--64902513	27	11.0	27	79	6	181	31	8	18	40	1.81
64902196--64902492	54	5.5	53	78	6	256	31	8	18	40	1.82
64902307--64902513	80	2.6	79	85	2	270	30	8	20	41	1.81
64911284--64911452	43	4.0	43	74	10	123	33	24	14	27	1.95
64939477--64939572	48	2.0	48	95	0	174	28	5	23	42	1.75
64940658--64940710	26	2.0	26	100	0	106	15	18	18	47	1.83
64943490--64943623	68	2.0	68	86	0	187	30	16	25	27	1.97
64951505--64951529	13	1.9	13	100	0	50	8	0	24	68	1.16
64953059--64953255	41	4.8	41	92	5	317	28	20	22	27	1.99
64953470--64953533	33	2.0	32	90	3	101	26	9	25	39	1.86
64953477--64953550	33	2.3	33	80	2	87	28	8	25	37	1.84
64971103--64971181	3	27.3	3	77	12	67	3	30	0	65	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64971122--64971183	20	3.1	19	73	15	54	4	24	0	70	1.06
64971098--64971181	14	5.9	14	76	12	73	3	29	0	66	1.08
64971100--64971181	17	4.9	16	75	8	58	3	30	0	65	1.09
64973590--64973649	30	2.0	30	100	0	120	16	23	3	56	1.55
64974849--64974890	9	4.6	9	80	16	50	76	2	21	0	0.90
64975932--64975969	6	6.3	6	87	0	58	18	31	28	21	1.97
64976024--64976096	18	3.7	18	74	25	76	52	1	24	21	1.55
64976010--64976095	42	2.0	42	95	0	154	50	3	23	23	1.65
64976014--64976081	21	3.2	21	69	29	54	48	4	25	22	1.69
64976069--64976126	20	3.1	19	82	9	66	50	0	25	24	1.50
64976951--64977031	42	1.9	42	87	5	119	30	19	25	23	1.98
64988450--64988667	40	5.5	40	88	2	291	25	26	22	24	2.00
64999287--64999452	45	3.6	45	87	1	215	43	16	21	17	1.87
65000966--65001010	21	2.2	21	88	7	67	55	22	13	8	1.65
65001016--65001127	21	5.4	21	73	2	100	42	13	24	19	1.87
65019164--65019213	22	2.4	19	79	20	64	54	0	0	46	1.00
65019170--65019248	17	4.6	17	72	16	65	53	2	1	43	1.22
65027965--65028068	26	4.0	26	94	0	172	35	23	7	33	1.83
65036526--65036570	22	2.0	22	86	0	63	22	37	11	28	1.88
65037406--65037467	21	3.0	21	70	0	61	43	19	22	14	1.87
65037385--65037488	42	2.5	41	85	6	129	45	18	22	14	1.85
65037410--65037517	42	2.6	42	85	5	146	43	17	25	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65040358--65040389	13	2.5	13	100	0	64	0	21	46	31	1.52
65040514--65040565	24	2.2	24	100	0	104	26	21	11	40	1.87
65041486--65041556	24	3.0	24	87	2	99	30	15	25	28	1.96
65042512--65042568	28	2.0	28	83	6	71	15	12	12	59	1.61
65042682--65042706	10	2.5	10	100	0	50	84	0	0	16	0.63
65042930--65042976	20	2.4	19	82	10	58	59	10	2	27	1.42
65042942--65042992	10	5.2	10	79	11	61	58	9	1	29	1.41
65043717--65044009	114	2.6	114	81	4	306	29	16	23	31	1.96
65044585--65044868	90	3.2	90	90	0	453	27	7	14	51	1.67
65044533--65044954	179	2.4	175	79	4	486	26	5	13	54	1.60
65045544--65045616	21	3.6	19	72	17	58	23	9	0	67	1.20
65045566--65045609	22	2.0	21	83	12	54	22	9	0	68	1.18
65045587--65045643	15	3.9	14	77	18	53	24	8	1	64	1.31
65045653--65045722	22	3.2	22	66	8	52	38	1	8	51	1.41
65045637--65045744	44	2.5	44	90	0	171	37	1	10	50	1.47
65049322--65049408	41	2.1	41	80	2	95	39	18	26	16	1.91
65049344--65049434	41	2.2	41	82	0	101	40	18	24	16	1.90
65049398--65049492	21	4.6	20	69	5	55	45	15	18	20	1.86
65049426--65049513	42	2.1	42	89	0	131	48	17	18	15	1.81
65050317--65050351	17	2.1	17	94	0	61	71	14	5	8	1.29
65051786--65052077	120	2.5	118	88	3	435	35	16	16	31	1.92
65056635--65056666	15	2.1	15	100	0	64	43	18	12	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65057784--65057818	17	2.1	16	89	5	52	37	5	0	57	1.23
65068237--65068271	18	1.9	18	88	11	54	60	8	8	22	1.54
65072255--65072279	12	2.1	12	100	0	50	36	0	24	40	1.55
65075380--65075444	20	3.2	21	72	12	73	13	26	20	40	1.89
65075362--65075450	39	2.3	39	96	0	160	15	24	21	38	1.92
65080952--65081547	70	8.5	70	79	0	474	26	17	26	28	1.98
65080977--65081547	210	2.7	210	78	2	581	26	17	26	29	1.98
65082844--65082977	40	3.3	40	77	2	135	38	17	24	20	1.93
65084098--65084228	70	1.9	70	82	3	165	25	16	25	32	1.96
65084200--65084334	70	1.9	70	84	0	180	28	16	24	31	1.96
65085113--65085151	21	2.0	21	85	10	55	38	7	12	41	1.72
65086785--65086952	46	3.6	44	79	10	160	24	30	18	26	1.98
65090252--65090345	23	4.0	24	75	15	74	28	20	23	27	1.99
65090270--65090373	23	4.4	24	73	13	99	33	17	22	26	1.96
65094854--65094890	18	2.1	17	90	5	56	35	0	18	45	1.50
65095863--65095923	19	3.1	19	81	9	70	50	0	1	47	1.10
65096257--65096297	3	13.7	3	89	0	64	31	36	2	29	1.71
65097719--65098000	72	3.9	72	89	1	404	54	14	7	23	1.65
65097719--65098000	145	2.0	145	87	2	406	54	14	7	23	1.65
65098437--65098498	18	3.4	18	90	0	97	35	11	16	37	1.84
65099615--65099668	26	2.1	26	96	0	99	44	20	12	22	1.85
65100217--65100419	41	4.9	41	88	0	280	31	23	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65101442--65101480	19	2.1	19	90	4	62	46	2	2	48	1.29
65104199--65104228	13	2.2	14	94	5	53	90	0	10	0	0.47
65105585--65105734	43	3.5	43	93	3	232	25	18	26	29	1.98
65108330--65108396	30	2.3	29	81	2	71	25	13	26	34	1.93
65108613--65108653	6	6.5	6	83	10	55	78	4	0	17	0.93
65108616--65108655	20	2.0	20	90	0	62	75	7	0	17	1.03
65108673--65108722	9	5.6	9	80	0	55	28	8	20	44	1.79
65109941--65110003	31	2.0	31	87	6	92	26	3	65	4	1.28
65113829--65113883	27	2.0	27	100	0	110	21	23	14	40	1.90
65116741--65116977	130	1.8	132	84	3	327	32	20	15	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325