genome.fa.s3.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  131  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41815138--41815266	54	2.4	55	80	5	129	17	28	24	29	1.97
41816946--41816987	22	2.0	22	85	4	59	42	11	4	40	1.63
41821483--41821527	12	3.8	12	81	0	63	37	13	11	37	1.80
41827173--41827240	28	2.4	28	87	4	93	35	26	10	27	1.89
41827624--41827916	109	2.8	104	92	6	465	41	14	8	35	1.76
41827603--41827916	101	3.0	107	88	9	479	40	15	7	35	1.76
41832090--41832389	101	2.9	105	90	6	482	42	13	7	36	1.72
41836976--41837149	46	3.8	44	75	17	140	27	21	28	21	1.99
41837026--41837196	46	3.7	44	75	12	139	27	22	29	20	1.98
41848738--41848772	14	2.6	14	95	4	63	42	0	0	57	0.99
41849877--41849910	14	2.3	15	90	5	52	44	0	23	32	1.54
41850013--41850067	24	2.3	24	77	0	65	40	9	14	36	1.78
41850125--41850307	54	3.4	53	87	2	224	34	13	24	27	1.93
41850280--41850773	39	12.7	39	76	3	296	40	15	23	20	1.91
41850293--41850733	78	5.7	78	76	4	327	40	16	21	21	1.91
41850285--41850773	117	4.2	117	74	4	360	40	15	23	20	1.91
41850753--41850986	54	4.3	54	83	1	281	36	14	23	25	1.93
41850963--41851318	39	9.1	39	75	4	261	40	13	23	22	1.89
41851059--41851378	117	2.7	117	78	1	318	42	14	20	21	1.88
41856789--41857110	46	6.8	50	77	12	254	23	32	18	25	1.97
41865474--41865629	76	2.1	76	100	0	312	57	7	10	25	1.56
41866036--41866094	21	2.8	21	82	10	66	49	6	0	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41866033--41866097	22	2.9	23	73	13	64	50	6	0	43	1.27
41866222--41866268	25	1.9	25	86	4	69	36	2	4	57	1.30
41875777--41876048	43	6.6	43	87	8	411	30	32	25	11	1.90
41875951--41876017	33	2.0	34	97	2	127	28	35	26	8	1.87
41876041--41876164	38	3.2	38	83	2	131	29	27	20	22	1.99
41881472--41881784	43	7.5	43	88	6	491	31	32	25	9	1.89
41881643--41881709	34	2.0	34	96	0	125	29	31	28	10	1.90
41881557--41881784	120	1.9	120	96	0	420	31	32	26	10	1.89
41881600--41881752	77	2.0	77	96	0	279	30	32	26	10	1.90
41881777--41881900	38	3.2	38	83	2	131	28	26	20	24	1.99
41887565--41887736	89	1.9	89	92	2	292	34	7	13	44	1.72
41887843--41887867	13	1.9	13	100	0	50	56	0	0	44	0.99
41888031--41888075	22	2.1	22	87	4	65	35	4	8	51	1.54
41888058--41888112	28	2.0	28	89	6	87	43	3	3	49	1.37
41891871--41892022	67	2.3	66	81	8	161	24	30	15	29	1.96
41892748--41892808	30	2.0	30	90	0	95	29	24	6	39	1.80
41894754--41894923	85	2.1	83	80	7	186	40	13	7	38	1.73
41895047--41895114	32	2.2	31	84	12	86	63	0	1	35	1.04
41895076--41895102	11	2.5	11	100	0	54	74	0	0	25	0.83
41895386--41895448	29	2.3	26	81	13	72	33	1	1	63	1.13
41895379--41895465	19	4.5	19	74	10	70	34	2	1	62	1.16
41895454--41895503	25	2.0	26	84	7	68	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41895509--41895538	15	2.0	15	93	0	51	16	0	0	83	0.65
41895929--41895979	16	3.2	16	81	15	70	52	11	9	25	1.68
41895938--41895994	15	3.7	15	80	13	71	50	12	12	24	1.74
41895929--41895995	31	2.2	31	94	0	116	50	11	11	25	1.73
41896194--41896227	15	2.3	15	89	0	50	44	0	0	55	0.99
41899903--41899983	40	2.0	40	100	0	162	35	4	12	46	1.63
41920841--41920958	59	2.0	59	98	0	227	48	16	10	24	1.77
41928589--41928640	26	2.0	26	96	0	95	19	28	3	48	1.66
41933576--41933628	23	2.3	24	74	9	56	71	11	5	11	1.29
41941783--41941921	69	2.0	69	98	0	269	26	12	32	28	1.93
41953987--41954042	23	2.4	23	90	0	94	39	5	16	39	1.71
41953987--41954055	23	3.0	23	85	4	68	40	5	15	37	1.72
41955559--41955630	31	2.4	31	83	2	92	38	8	6	45	1.61
41960843--41960881	20	2.0	20	85	10	53	25	0	7	66	1.18
41962384--41962642	129	2.0	129	99	0	509	44	11	18	25	1.83
41962839--41963114	49	5.8	48	77	11	223	22	30	19	27	1.98
41962839--41963112	94	2.9	95	76	7	286	22	30	19	27	1.98
41968504--41968708	27	7.6	27	85	4	225	29	27	14	28	1.95
41968504--41968707	54	3.8	54	83	6	252	29	27	14	28	1.95
41976751--41976952	27	7.6	27	86	3	239	29	28	15	27	1.96
41976751--41976951	80	2.5	79	83	3	242	29	28	15	26	1.96
41978459--41978505	24	2.0	24	84	12	62	12	17	0	70	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41990587--41990647	27	2.3	27	80	5	79	24	22	11	40	1.87
41995960--41996066	6	16.8	6	69	25	53	22	13	13	51	1.75
41995969--41996041	32	2.3	32	92	2	121	23	12	13	50	1.75
41995998--41996066	26	2.7	27	86	10	101	21	14	13	50	1.76
41995996--41996071	13	5.9	13	72	17	61	21	14	13	51	1.76
42010003--42010206	27	7.6	27	85	3	232	28	28	14	27	1.95
42011709--42011754	23	2.0	23	84	12	60	13	17	0	69	1.19
42018250--42018451	27	7.6	26	85	6	244	29	28	15	27	1.96
42018250--42018451	80	2.5	79	83	4	253	29	28	15	27	1.96
42019954--42020000	24	2.0	24	84	12	62	12	17	0	70	1.17
42029469--42029827	27	13.3	27	84	4	429	27	21	9	41	1.84
42029469--42029821	54	6.5	54	89	1	503	27	22	9	40	1.84
42029831--42030025	27	7.2	27	85	0	228	36	18	18	25	1.94
42029831--42030025	54	3.6	54	86	2	257	36	18	18	25	1.94
42030226--42030307	27	3.1	26	87	5	110	19	21	20	37	1.94
42030395--42030453	22	2.7	22	83	0	73	22	25	20	32	1.98
42033108--42033391	6	46.8	6	73	17	223	21	16	13	48	1.80
42033108--42033380	85	3.2	84	82	8	281	21	16	13	48	1.81
42033145--42033302	73	2.2	73	95	0	271	20	17	13	47	1.82
42041102--42041369	46	5.6	48	81	9	282	23	29	20	26	1.99
42041754--42041810	30	1.9	30	92	0	96	28	22	14	35	1.93
42047460--42047485	13	2.0	13	100	0	52	15	30	30	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42054928--42054957	14	2.1	14	100	0	60	33	23	0	43	1.54
42060197--42060338	40	3.6	40	91	0	223	26	26	23	23	2.00
42068076--42068257	40	4.6	40	90	2	278	25	27	23	23	2.00
42074187--42080937	880	7.7	880	84	2	8050	34	16	18	31	1.93
42081051--42081119	35	2.0	35	97	0	129	26	18	15	39	1.91
42083800--42083845	17	2.7	18	76	6	51	23	10	13	52	1.71
42087497--42087585	43	2.1	43	100	0	178	37	13	19	30	1.90
42088785--42088831	24	1.9	25	86	4	69	21	19	21	38	1.94
42093884--42094204	46	6.9	46	73	15	187	27	19	29	23	1.98
42093891--42094238	138	2.5	138	80	5	373	26	19	29	24	1.98
42101862--42101929	34	2.0	34	100	0	136	35	35	14	14	1.87
42105526--42105667	40	3.6	40	87	2	207	26	26	21	24	2.00
42116252--42116346	27	3.4	27	70	22	88	17	5	22	54	1.63
42116252--42116364	58	1.9	58	100	0	226	21	4	21	53	1.63
42116268--42116358	26	3.3	26	69	21	85	21	4	21	51	1.65
42117791--42117850	27	2.3	26	85	2	75	21	23	20	35	1.96
42120169--42120295	47	2.7	47	81	0	146	32	29	14	23	1.95
42123493--42123539	23	2.0	24	83	4	60	53	12	6	27	1.63
42123649--42123674	11	2.4	11	100	0	52	38	0	0	61	0.96
42125001--42125214	48	4.5	48	88	1	279	27	16	27	28	1.97
42124999--42125232	95	2.5	96	85	1	292	26	16	26	29	1.97
42141103--42141286	39	4.6	39	87	5	228	25	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42141063--42141286	40	5.7	40	84	7	246	25	21	27	25	2.00
42141063--42141286	79	2.8	78	83	8	247	25	21	27	25	2.00
42141116--42141319	79	2.6	79	80	8	186	25	20	27	25	1.99
42144623--42144679	30	1.9	30	92	0	96	26	19	22	31	1.98
42146931--42147036	47	2.3	47	80	3	115	33	30	11	25	1.91
42150790--42150819	15	2.0	15	93	0	51	0	13	36	50	1.42
42167552--42167622	25	2.8	25	85	4	81	26	22	16	33	1.96
42198825--42198915	45	2.0	45	97	0	173	38	23	13	25	1.91
42198846--42198919	21	3.4	21	67	17	60	39	25	13	21	1.90
42224619--42224686	29	2.3	29	85	5	93	27	30	13	27	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325