genome.fa.s3.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  198  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64176658--64177248	220	2.7	220	93	1	988	32	18	21	27	1.97
64177189--64177483	78	3.8	78	90	1	457	31	19	24	24	1.98
64177500--64177696	45	4.4	45	86	1	270	32	14	28	24	1.94
64177497--64177696	89	2.2	90	88	3	305	32	14	28	25	1.94
64178045--64178116	19	3.9	19	91	8	123	37	11	15	36	1.83
64178037--64178112	36	2.1	34	84	13	100	38	13	13	35	1.83
64178045--64178126	19	4.3	21	82	14	67	37	9	15	36	1.81
64178406--64178440	18	2.0	17	88	5	52	31	0	0	68	0.90
64184248--64184399	40	3.8	40	89	2	207	25	28	21	24	1.99
64192385--64192536	40	3.8	40	86	4	182	26	28	20	25	1.99
64194983--64195228	40	6.2	40	79	12	233	23	22	28	25	1.99
64195022--64195205	79	2.3	80	90	0	280	23	23	27	25	2.00
64195022--64195228	79	2.6	79	86	3	274	23	23	27	25	2.00
64196840--64196985	29	5.1	28	80	8	154	26	30	14	28	1.95
64196840--64196981	57	2.5	57	83	8	166	26	31	14	27	1.95
64198450--64198481	9	3.8	9	84	16	50	6	0	37	56	1.25
64198450--64198481	16	2.0	16	100	0	64	6	0	37	56	1.25
64219081--64219156	24	3.2	24	82	0	98	15	27	38	18	1.91
64221293--64221444	43	3.5	43	74	12	123	25	15	24	34	1.94
64227053--64227131	37	2.1	37	90	0	122	25	31	18	24	1.98
64227312--64227896	47	12.3	47	92	4	924	30	28	8	32	1.87
64227312--64227896	191	3.1	188	90	5	921	30	28	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64227716--64227791	22	3.3	22	64	10	62	28	31	10	28	1.90
64232119--64232290	43	4.0	42	75	13	136	25	19	23	31	1.98
64234670--64234835	46	3.6	45	78	11	194	20	21	28	29	1.98
64234667--64234836	91	1.9	92	93	1	297	20	21	29	28	1.98
64242212--64242377	46	3.6	45	74	12	149	21	18	28	31	1.97
64242207--64242378	93	1.8	93	87	2	256	20	19	29	30	1.97
64245509--64245538	14	2.1	14	93	0	51	56	20	0	23	1.42
64254010--64254193	79	2.3	80	82	8	216	25	22	27	25	2.00
64254011--64254193	40	4.6	39	80	8	201	25	22	27	24	2.00
64254062--64254226	79	2.1	79	83	6	201	26	21	27	24	1.99
64259569--64259593	12	2.1	12	100	0	50	16	8	16	60	1.58
64260310--64260627	47	6.7	46	75	12	227	25	19	30	24	1.98
64260310--64260628	94	3.4	92	80	11	328	25	19	31	24	1.98
64291605--64291742	70	2.0	70	95	0	249	28	12	13	44	1.80
64297454--64297719	48	5.6	48	86	6	326	28	28	17	25	1.98
64297454--64297719	94	2.8	95	85	5	342	28	28	17	25	1.98
64301798--64301832	14	2.5	14	95	0	61	37	17	0	45	1.48
64305269--64305580	48	6.5	48	89	0	437	26	28	17	27	1.98
64307428--64307460	12	2.8	12	95	0	57	12	21	42	24	1.86
64321610--64321761	67	2.2	68	79	10	168	32	17	29	21	1.96
64326790--64326832	17	2.6	17	81	3	52	32	4	20	41	1.73
64338695--64338905	111	1.9	115	86	6	306	27	17	17	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64338684--64338905	56	4.0	55	79	12	247	28	17	16	37	1.91
64341886--64341936	6	8.7	6	78	8	52	45	1	15	37	1.58
64341906--64341952	23	2.0	23	84	8	60	44	2	12	40	1.54
64341889--64341942	17	3.1	18	79	12	60	40	1	16	40	1.59
64342129--64342205	28	2.7	28	87	2	91	58	1	7	32	1.35
64342146--64342189	17	2.6	17	81	0	61	63	0	4	31	1.14
64342380--64342419	6	7.0	6	88	8	57	52	2	15	30	1.55
64342380--64342424	11	4.0	11	88	5	63	55	2	13	28	1.50
64342381--64342430	23	2.2	23	82	7	57	58	2	16	24	1.49
64342400--64342523	38	3.4	38	68	18	109	60	3	12	23	1.47
64342491--64342549	23	2.6	21	77	15	64	67	1	13	16	1.30
64342326--64342522	96	2.1	94	82	11	231	61	2	13	22	1.43
64342592--64342659	17	4.0	17	96	0	127	51	5	11	30	1.62
64342592--64342698	11	9.5	11	70	15	58	55	4	11	28	1.55
64342514--64342814	154	1.9	156	81	9	366	58	3	11	27	1.48
64342859--64342919	32	1.9	32	93	0	104	54	8	16	21	1.68
64342898--64342940	20	2.2	20	83	8	52	62	4	11	20	1.46
64344267--64344489	89	2.5	89	87	2	306	58	11	4	25	1.52
64345001--64345160	54	3.0	54	85	6	227	43	16	15	25	1.87
64345001--64345159	52	3.0	53	86	5	223	42	16	15	25	1.87
64349879--64350003	46	2.7	46	87	0	169	22	20	27	29	1.99
64355491--64355532	20	2.2	20	87	12	61	28	21	0	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64356163--64356219	15	3.9	15	83	2	71	50	8	0	40	1.33
64356898--64356936	13	3.0	12	85	14	51	0	28	0	71	0.86
64362579--64362642	32	2.0	32	96	0	119	23	15	29	31	1.95
64363723--64363763	20	2.0	20	90	0	64	48	21	21	7	1.74
64363996--64364045	25	2.0	25	100	0	100	52	12	4	32	1.57
64367925--64367988	31	2.1	31	100	0	128	34	15	17	32	1.91
64368940--64369093	42	3.6	42	84	3	202	30	17	24	27	1.97
64368938--64369093	85	1.8	84	86	4	224	30	17	24	27	1.98
64371463--64371647	79	2.3	81	81	7	209	24	22	27	25	2.00
64371463--64371647	40	4.7	40	81	6	207	24	22	27	25	2.00
64376100--64376175	37	2.1	37	97	0	143	18	18	21	42	1.90
64382128--64382172	23	2.0	22	86	4	63	37	42	11	8	1.72
64383664--64383713	10	5.0	10	79	11	50	70	0	8	22	1.13
64389608--64389657	19	2.7	18	84	12	66	40	0	0	60	0.97
64389608--64389655	18	2.6	17	87	9	60	39	0	0	60	0.97
64389620--64389684	28	2.3	28	81	5	69	43	3	1	52	1.26
64389686--64389755	20	3.6	20	76	14	58	28	5	2	62	1.32
64389683--64389756	29	2.6	28	77	10	78	28	5	2	63	1.30
64389747--64389793	20	2.4	19	82	10	58	44	0	2	53	1.12
64397307--64397475	44	3.7	45	79	16	179	21	21	28	28	1.98
64400417--64400457	15	2.7	15	88	0	64	12	19	9	58	1.61
64404845--64405341	43	11.6	43	83	3	516	37	24	18	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64404845--64405340	171	2.9	168	81	5	548	37	24	18	19	1.94
64414639--64414670	14	2.4	14	90	10	50	21	9	28	40	1.84
64414636--64414931	50	5.9	51	77	6	275	27	16	25	31	1.96
64414640--64414925	151	1.9	152	85	3	398	26	16	25	31	1.96
64429348--64430061	357	2.0	357	90	1	1135	35	12	22	29	1.91
64433616--64433802	46	4.0	46	78	6	171	31	19	26	23	1.98
64434664--64434939	27	10.2	27	81	4	270	28	20	9	42	1.82
64434673--64434930	54	4.8	54	82	1	320	29	20	8	41	1.82
64434664--64434939	81	3.4	81	85	3	349	28	20	9	42	1.82
64434944--64435139	27	7.3	27	84	0	221	36	18	19	25	1.95
64435338--64435420	27	3.1	26	86	5	103	19	20	21	38	1.93
64435508--64435566	22	2.7	22	81	0	64	20	25	22	32	1.98
64435731--64435797	27	2.5	27	85	4	82	19	25	19	35	1.95
64435922--64436078	6	25.8	6	74	16	119	21	17	12	49	1.79
64435922--64436049	55	2.3	55	90	2	195	21	17	11	48	1.79
64440231--64440461	99	2.3	97	85	3	309	29	26	18	25	1.98
64440685--64440738	27	2.0	27	85	0	72	38	14	7	38	1.75
64446138--64446369	49	4.7	49	82	5	295	28	26	18	26	1.98
64446595--64446648	27	2.0	27	85	0	72	38	14	7	38	1.75
64448682--64448839	86	1.8	85	82	6	203	31	24	18	25	1.98
64463158--64463429	46	5.8	49	77	11	209	24	28	18	28	1.98
64463303--64463442	47	3.0	47	74	13	126	27	28	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64477137--64477193	25	2.3	25	90	0	87	26	21	24	28	1.99
64477137--64477203	25	2.7	25	83	4	82	28	20	23	26	1.99
64487214--64487739	264	2.0	264	93	0	908	41	15	12	30	1.83
64489168--64489223	25	2.2	26	76	17	64	62	0	3	33	1.12
64490973--64491164	40	4.8	40	89	3	289	22	21	29	26	1.99
64493174--64493207	16	2.2	15	89	5	50	55	2	0	41	1.15
64493275--64493330	29	1.9	29	82	7	69	53	12	7	26	1.64
64495627--64495751	29	4.3	29	83	1	144	32	28	14	24	1.94
64507948--64507981	16	2.2	15	94	5	59	17	8	0	73	1.08
64525775--64525997	40	5.6	39	80	7	216	25	21	27	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325