genome.fa.s3.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  112  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36297638--36297680	16	2.7	16	81	0	59	53	20	18	6	1.67
36297884--36298003	29	4.2	29	77	10	131	26	13	35	25	1.93
36297872--36298003	57	2.3	56	81	11	144	28	12	33	26	1.92
36303103--36303175	36	2.0	36	97	0	137	32	15	15	36	1.88
36315699--36315738	17	2.3	18	86	4	55	45	7	0	47	1.31
36316254--36316337	26	3.2	26	96	0	150	34	5	23	35	1.80
36317779--36317851	26	2.8	25	81	8	74	35	19	12	32	1.89
36317955--36318067	27	4.2	27	82	3	120	17	23	22	36	1.95
36317953--36318067	54	2.1	54	87	3	160	17	23	22	36	1.95
36320350--36320566	40	5.5	40	86	3	280	22	23	29	24	1.99
36325436--36325539	46	2.2	47	94	1	183	34	6	30	27	1.83
36346067--36346215	41	3.5	43	79	8	142	27	27	18	26	1.98
36346096--36346228	45	3.0	44	77	9	130	32	26	17	24	1.97
36348443--36348602	40	4.0	40	84	3	205	24	20	27	27	1.99
36350706--36350755	25	2.0	25	88	7	75	40	20	0	40	1.52
36356590--36356665	40	1.9	40	86	0	107	32	31	15	19	1.94
36360583--36360643	10	6.1	10	74	12	54	32	13	24	29	1.93
36360584--36360644	20	3.0	20	83	9	79	32	13	26	27	1.93
36362649--36362711	33	1.9	33	84	12	85	12	25	6	55	1.60
36362709--36362764	21	2.7	21	72	5	51	8	17	1	71	1.21
36362708--36362764	14	4.1	14	75	16	57	8	17	1	71	1.19
36362771--36362829	18	3.3	18	80	0	73	5	11	6	76	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36362803--36362833	11	2.7	12	90	10	55	0	9	6	83	0.79
36362726--36362833	6	17.7	6	67	12	60	6	16	3	73	1.19
36364012--36364040	10	2.7	11	94	5	51	6	3	6	82	0.93
36365298--36365358	10	6.1	10	74	12	54	32	13	24	29	1.93
36365299--36365359	20	3.0	20	83	9	79	32	13	26	27	1.93
36370059--36370382	42	7.3	41	75	15	227	30	25	15	28	1.96
36370174--36370365	48	4.0	48	87	2	271	29	23	15	30	1.96
36370354--36370529	37	4.8	37	87	3	214	26	28	17	27	1.98
36373008--36373084	28	2.8	28	81	0	100	29	27	11	31	1.92
36380065--36380244	48	3.7	48	80	5	184	25	21	30	22	1.99
36381798--36381967	46	3.7	45	73	13	148	22	27	20	30	1.98
36381702--36381966	94	2.8	92	80	12	249	23	29	18	29	1.98
36390864--36390928	32	2.0	32	100	0	130	43	18	12	26	1.85
36391466--36391510	22	2.0	22	83	8	56	37	4	0	57	1.19
36393715--36393797	43	1.9	43	87	4	123	21	20	31	26	1.98
36394557--36394611	18	3.2	18	68	19	53	20	9	27	43	1.81
36394541--36394611	34	2.1	34	94	0	124	19	12	26	40	1.88
36394541--36394596	16	3.4	16	70	18	51	19	16	26	37	1.92
36398879--36399098	21	9.9	21	80	14	246	34	8	30	27	1.86
36398898--36399026	27	5.2	27	75	21	147	32	9	30	27	1.88
36398879--36399098	48	4.9	47	92	4	307	34	8	30	27	1.86
36408059--36408086	13	2.2	13	100	0	56	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36408354--36408387	18	1.9	18	94	5	61	38	11	5	44	1.65
36410313--36410436	48	2.6	48	90	0	185	24	17	32	25	1.97
36413921--36414178	47	5.4	47	90	3	392	27	31	7	33	1.85
36413921--36414178	96	2.7	96	93	2	432	27	31	7	33	1.85
36414080--36414155	22	3.3	22	66	16	64	25	31	11	31	1.91
36421794--36421877	28	3.0	28	87	1	114	20	3	28	47	1.66
36422082--36422167	21	4.0	23	76	13	92	16	20	24	38	1.93
36423247--36423433	46	3.9	48	75	15	163	25	15	28	29	1.96
36431676--36431801	48	2.6	48	89	0	189	23	16	32	27	1.96
36435740--36435784	16	2.7	17	83	13	58	75	0	17	6	1.01
36435740--36435786	23	2.1	23	88	11	71	74	0	19	6	1.03
36436879--36436923	10	4.4	10	80	5	54	13	22	22	42	1.88
36436876--36436924	21	2.4	20	86	3	62	12	20	22	44	1.84
36443752--36443963	94	2.3	94	82	4	241	29	18	26	25	1.98
36443752--36444108	46	7.5	48	73	13	183	27	20	28	24	1.99
36453153--36453275	43	2.9	44	75	11	130	26	17	23	31	1.97
36459319--36459403	41	2.1	41	88	4	127	16	21	29	32	1.95
36459318--36459383	20	3.2	20	66	19	55	16	22	31	28	1.96
36470270--36470445	46	3.8	46	78	10	205	23	19	25	30	1.98
36470267--36470437	93	1.8	93	93	0	297	23	20	25	29	1.99
36472168--36472367	27	7.4	27	87	0	274	35	20	20	24	1.96
36477533--36477645	42	2.7	42	88	0	181	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36477619--36477743	48	2.6	49	83	2	146	29	28	14	27	1.95
36479813--36480456	319	2.0	319	89	0	991	31	21	16	30	1.96
36488340--36488380	21	1.9	22	85	5	57	26	29	0	43	1.55
36488544--36488654	42	2.6	42	84	0	132	29	27	15	27	1.96
36488579--36488705	42	2.9	42	83	7	146	31	28	13	26	1.94
36488627--36488753	48	2.6	49	81	2	141	32	29	12	25	1.93
36497915--36498086	93	1.8	93	97	0	326	28	29	20	20	1.98
36497908--36498083	46	3.8	46	80	12	225	29	29	20	20	1.98
36502955--36503006	22	2.4	22	80	6	61	44	21	9	25	1.82
36506710--36506766	28	2.1	26	84	15	71	28	26	5	40	1.77
36508235--36508330	40	2.4	39	79	8	104	40	17	13	28	1.88
36508266--36508358	40	2.3	40	82	10	109	37	15	13	33	1.87
36508805--36508849	13	3.5	13	76	11	56	42	0	0	57	0.98
36508803--36508854	26	2.0	26	100	0	104	38	0	0	61	0.96
36508910--36508937	14	2.0	14	100	0	56	21	0	28	50	1.49
36510009--36510069	31	2.0	31	90	0	95	24	24	16	34	1.95
36510264--36510357	23	4.0	24	87	9	131	28	22	20	28	1.98
36510407--36510473	20	3.3	20	91	0	107	31	20	13	34	1.92
36510407--36510463	11	5.5	11	72	16	59	31	19	14	35	1.91
36513722--36513956	40	5.8	40	86	2	335	24	27	22	25	2.00
36513722--36513956	122	1.9	121	86	2	337	24	27	22	25	2.00
36513722--36513956	82	2.9	80	87	4	337	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36515171--36515249	37	2.1	37	90	0	122	25	31	18	24	1.98
36515368--36515929	47	11.7	47	95	2	928	29	29	8	32	1.87
36515368--36515908	49	11.3	49	95	2	926	29	29	8	32	1.87
36515368--36515908	96	5.6	96	95	3	946	29	29	8	32	1.87
36519788--36520019	40	5.8	40	89	0	356	24	27	21	26	2.00
36521234--36521312	37	2.1	37	90	0	122	25	31	18	24	1.98
36521433--36521991	47	11.7	47	94	3	940	29	29	8	32	1.87
36521433--36521991	96	5.9	94	94	2	940	29	29	8	32	1.87
36525038--36525100	31	2.0	31	90	0	99	23	22	15	38	1.93
36525294--36525364	23	3.0	23	87	6	88	26	21	21	30	1.98
36525414--36525480	20	3.3	20	93	0	116	32	20	11	34	1.90
36525414--36525469	11	5.5	11	71	16	57	32	19	12	35	1.89
36525517--36525564	25	1.9	25	86	0	69	25	16	25	33	1.96
36527030--36527996	482	2.0	482	99	0	1916	27	28	15	28	1.96
36528453--36528496	19	2.4	18	85	7	54	40	9	0	50	1.34
36530038--36530555	258	2.0	257	94	0	910	38	12	13	34	1.84
36531586--36531639	27	2.1	26	86	10	76	51	1	0	46	1.11
36532057--36532219	9	18.1	9	72	17	108	47	17	0	34	1.53
36532066--36532202	36	3.5	38	84	13	172	48	16	0	34	1.52
36535675--36535924	108	2.3	110	90	4	400	35	17	24	22	1.95
36535675--36535938	53	4.9	54	82	8	304	35	17	23	23	1.95
36546031--36546263	49	4.7	50	82	2	299	26	18	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36546034--36546263	100	2.3	98	86	2	307	26	19	26	28	1.99
36554996--36555173	27	6.6	27	83	3	196	26	14	29	29	1.95
36554996--36555173	54	3.3	55	84	4	236	26	14	29	29	1.95
36562497--36562734	120	1.9	121	94	4	415	32	12	16	37	1.87
36574863--36574962	52	1.9	52	89	0	155	42	21	3	34	1.68
36580482--36580560	37	2.1	37	85	0	104	50	15	16	17	1.78
36580522--36580617	25	3.8	25	84	0	111	45	14	18	20	1.85
36580455--36580676	31	7.4	30	70	16	104	47	13	18	20	1.82
36580492--36580672	87	2.1	87	89	0	272	46	13	18	20	1.83
36580574--36580646	37	2.0	37	91	0	119	43	12	20	23	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325