genome.fa.s3.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  111  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35915048--35915102	27	1.9	30	82	10	71	3	20	5	70	1.22
35927789--35927847	30	2.0	30	83	6	75	33	18	8	38	1.81
35933154--35933314	46	3.3	46	73	13	151	44	17	8	29	1.79
35933173--35933366	54	3.7	54	75	12	215	43	17	8	30	1.78
35933171--35933356	100	1.9	100	97	0	354	44	16	8	31	1.77
35933145--35933356	100	2.1	98	91	3	334	44	16	8	30	1.78
35934311--35934389	32	2.5	32	91	4	124	51	20	1	26	1.55
35934371--35934417	21	2.1	21	88	7	67	48	19	0	31	1.49
35946854--35946892	19	2.1	19	85	0	51	48	23	20	7	1.75
35949459--35949590	40	3.3	40	95	2	230	27	28	20	24	1.99
35949459--35949644	80	2.3	81	84	5	236	27	27	20	24	1.99
35951461--35951489	15	1.9	15	100	0	58	51	0	6	41	1.28
35955871--35955898	14	2.0	14	100	0	56	21	14	14	50	1.78
35959979--35960026	20	2.5	20	86	3	62	64	2	6	27	1.28
35960047--35960078	15	2.1	15	94	0	55	46	9	0	43	1.35
35968241--35968319	25	3.2	25	87	0	113	30	18	21	29	1.97
35968302--35968368	25	2.7	25	81	9	84	32	25	17	23	1.97
35976758--35976822	26	2.5	26	75	9	69	53	0	1	44	1.09
35976780--35976839	21	3.1	20	68	22	56	50	0	1	48	1.11
35976784--35976825	16	2.6	17	85	7	52	52	0	2	45	1.13
35976780--35976855	37	2.1	37	87	0	107	48	2	1	47	1.24
35980300--35980351	4	13.0	4	100	0	104	25	0	25	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35987154--35987186	15	2.1	16	94	5	59	60	3	12	24	1.46
35992985--35993011	14	1.9	14	100	0	54	37	3	22	37	1.72
36001590--36001662	22	3.5	21	78	12	62	42	16	6	34	1.75
36001590--36001647	22	2.6	22	81	7	64	41	17	5	36	1.72
36001626--36001748	19	6.8	19	87	10	195	37	14	11	36	1.82
36001626--36001748	54	2.3	54	98	0	237	37	14	11	36	1.82
36001626--36001745	35	3.3	36	87	6	181	37	15	11	35	1.83
36004884--36004963	40	2.0	40	100	0	160	35	2	22	40	1.68
36009272--36009322	12	3.7	13	82	15	50	54	0	5	39	1.24
36009281--36009359	16	5.2	15	74	15	65	59	0	5	35	1.19
36009337--36009382	23	2.0	22	88	12	67	69	2	0	28	1.00
36010548--36010658	48	2.4	48	93	3	190	24	9	32	34	1.87
36011729--36011832	27	3.9	27	83	9	124	35	21	24	19	1.96
36011729--36011832	54	1.9	53	86	9	149	35	21	24	19	1.96
36011936--36012011	26	2.8	27	80	4	82	30	11	21	36	1.89
36013459--36013566	26	4.2	26	97	0	207	36	26	6	30	1.82
36015768--36015861	40	2.3	40	81	3	118	29	23	24	22	1.99
36019846--36019901	25	2.4	23	78	21	64	53	3	0	42	1.18
36019849--36019902	23	2.3	23	80	20	60	55	3	0	40	1.17
36036518--36036695	27	6.6	27	85	3	205	29	29	14	26	1.95
36036518--36036695	54	3.3	54	85	3	232	29	29	14	26	1.95
36036539--36036694	81	1.9	82	88	3	235	29	29	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36044786--36044963	27	6.6	27	85	3	205	29	29	14	26	1.95
36044786--36044963	54	3.3	54	85	3	232	29	29	14	26	1.95
36044807--36044962	81	1.9	82	88	3	235	29	29	14	26	1.95
36051568--36051601	14	2.5	13	86	9	50	64	11	8	14	1.49
36057750--36057781	13	2.5	13	89	0	55	62	9	12	15	1.54
36065824--36065936	46	2.5	46	88	5	158	19	20	28	31	1.97
36068754--36068789	17	2.0	19	89	10	58	52	0	27	19	1.46
36070242--36070342	40	2.6	39	81	6	107	23	26	24	24	2.00
36070278--36070491	40	5.3	41	87	4	251	26	26	22	24	2.00
36070242--36070491	80	3.2	80	83	3	292	26	26	22	24	2.00
36075518--36075742	40	5.7	40	89	1	285	26	27	22	23	2.00
36081340--36081544	27	7.6	27	86	3	259	26	15	27	30	1.96
36081341--36081544	109	1.9	108	89	3	320	26	15	27	30	1.96
36089413--36089617	27	7.6	27	86	3	259	26	15	27	30	1.96
36089414--36089617	109	1.9	108	89	3	320	26	15	27	30	1.96
36095738--36095905	77	2.2	77	90	0	255	30	19	26	23	1.98
36097954--36098018	6	10.5	6	77	9	51	20	1	4	73	1.08
36097959--36098018	24	2.4	25	86	10	79	20	1	5	73	1.11
36110469--36110593	40	3.1	40	87	6	173	30	16	17	36	1.92
36111233--36111340	50	2.2	50	94	0	189	15	7	23	53	1.67
36116920--36117006	25	3.5	25	75	0	75	37	17	25	19	1.93
36126549--36126647	44	2.3	42	81	11	112	22	17	24	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36129295--36129352	30	1.9	30	82	0	71	32	10	27	29	1.90
36129683--36129847	46	3.5	46	76	8	154	28	16	29	25	1.97
36129681--36129906	46	5.0	43	73	14	152	29	16	29	24	1.96
36137233--36137389	43	3.7	42	80	10	185	23	17	26	31	1.97
36148687--36148715	12	2.3	13	94	5	51	51	3	0	44	1.18
36150246--36150366	43	2.9	41	79	10	120	28	25	14	30	1.95
36153117--36153150	17	2.0	17	100	0	68	58	0	0	41	0.98
36153043--36153173	58	2.3	57	81	13	148	51	3	1	44	1.26
36156027--36156115	44	2.0	44	95	0	160	13	25	3	57	1.52
36167706--36167784	39	2.0	41	87	5	117	45	12	8	32	1.73
36171258--36171296	5	7.6	5	91	2	60	38	0	20	41	1.53
36173576--36173803	40	5.7	40	90	3	361	25	28	21	24	1.99
36180373--36180407	9	3.9	9	96	0	61	5	22	0	71	1.07
36182773--36182827	27	2.0	27	100	0	110	58	3	7	30	1.43
36188302--36188384	39	2.1	39	93	0	148	45	15	9	28	1.78
36191783--36191899	56	2.1	56	98	0	225	30	16	15	37	1.90
36198791--36198835	19	2.5	18	86	13	58	53	2	4	40	1.33
36206183--36206227	3	15.0	3	95	0	63	60	0	6	33	1.23
36207402--36207435	17	2.0	17	100	0	68	5	0	41	52	1.25
36208101--36208252	72	2.1	72	84	7	193	34	17	16	31	1.93
36208154--36208634	127	3.8	127	98	0	912	34	19	16	28	1.94
36219281--36219324	23	1.9	23	100	0	88	56	9	4	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36219590--36219634	3	15.0	3	95	0	63	60	0	6	33	1.23
36220811--36220844	17	2.0	17	94	0	59	5	2	41	50	1.42
36227774--36227845	14	5.1	15	68	25	50	40	0	1	58	1.07
36227749--36227815	29	2.1	33	81	13	79	46	0	0	53	1.00
36228187--36228270	44	1.9	44	95	0	150	40	7	3	48	1.48
36229442--36229469	7	4.0	7	100	0	56	42	14	0	42	1.45
36233173--36233331	43	3.7	43	77	3	160	22	16	28	32	1.95
36235959--36236265	45	6.9	45	87	3	417	26	28	21	23	1.99
36238747--36238836	45	2.0	45	95	0	162	17	26	11	44	1.82
36240071--36240102	16	2.0	16	93	0	55	34	18	0	46	1.49
36240302--36240689	50	7.7	50	79	3	431	30	25	17	25	1.97
36240313--36240691	101	3.8	100	80	4	343	30	25	17	25	1.97
36240305--36240690	151	2.6	151	92	0	639	30	25	17	25	1.97
36241043--36241089	19	2.3	20	82	10	60	48	14	0	36	1.44
36241305--36241363	30	2.0	30	82	0	73	27	27	6	38	1.81
36246011--36246119	47	2.3	46	82	1	137	28	28	17	25	1.97
36247132--36247219	40	2.2	40	97	0	167	23	12	11	52	1.71
36253059--36253104	23	2.0	23	100	0	92	60	8	8	21	1.53
36257465--36257602	67	2.0	67	85	5	186	29	21	28	19	1.98
36257536--36257587	27	2.0	26	84	3	68	34	21	26	17	1.95
36258229--36258433	27	7.6	27	88	0	284	25	20	17	35	1.95
36258230--36258433	81	2.5	81	91	0	327	25	21	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36260406--36260550	37	3.9	37	92	0	236	26	31	17	23	1.97
36260683--36260980	48	6.2	48	93	0	497	32	25	6	36	1.81
36268995--36269046	27	2.0	26	84	3	68	32	21	26	19	1.97
36269644--36269697	27	2.0	27	85	3	74	35	20	22	22	1.96
36269698--36269870	27	6.4	27	88	0	247	24	20	19	34	1.96
36272246--36272272	12	2.2	12	100	0	54	14	18	7	59	1.58
36275701--36275873	46	3.7	46	80	13	219	21	21	28	28	1.98
36275698--36275868	93	1.8	93	96	0	315	21	21	29	28	1.98
36283235--36283360	46	2.7	46	96	0	225	20	21	28	29	1.98
36293311--36293426	29	4.1	29	78	10	123	26	12	34	25	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325