genome.fa.s3.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  151  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48352117--48352258	62	2.3	62	86	0	194	47	14	17	21	1.82
48352390--48352463	27	2.8	27	85	2	96	35	21	25	17	1.95
48352622--48352686	22	3.0	22	77	8	69	35	23	21	20	1.96
48353131--48353361	27	8.6	27	89	0	345	22	21	22	33	1.97
48353138--48353391	81	3.1	81	76	7	255	24	20	21	33	1.97
48353397--48353625	27	8.5	27	83	4	178	31	10	20	37	1.86
48353406--48353623	81	2.7	80	82	5	224	32	10	19	38	1.85
48353398--48353629	54	4.3	54	81	5	218	31	9	21	37	1.86
48353465--48353629	27	6.1	27	89	0	240	33	9	19	37	1.84
48357014--48357212	38	5.2	38	84	2	220	34	23	19	22	1.97
48363110--48363328	45	4.9	45	88	3	286	22	21	29	26	1.99
48363264--48363362	41	2.4	42	83	6	121	28	20	29	22	1.98
48369476--48369603	49	2.6	49	83	2	159	30	22	25	21	1.99
48373415--48373945	47	11.1	47	89	4	810	31	9	30	28	1.88
48373415--48373945	96	5.5	96	97	0	900	31	9	30	28	1.88
48377644--48377713	32	2.2	33	92	5	124	34	14	10	41	1.79
48383856--48383913	30	2.0	30	83	10	75	34	20	5	39	1.75
48385703--48386086	126	3.0	124	80	7	436	30	18	12	38	1.88
48386169--48386273	31	3.3	32	81	11	126	40	12	0	45	1.48
48399906--48399932	12	2.2	12	100	0	54	51	7	0	40	1.30
48400379--48400476	27	3.5	28	91	2	144	27	13	27	31	1.94
48400379--48400489	27	4.0	27	85	4	98	29	12	25	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48413585--48413755	50	3.4	50	86	0	245	26	16	25	30	1.97
48413527--48413755	100	2.3	100	89	2	334	25	16	26	31	1.96
48420325--48420568	50	4.9	50	76	5	217	27	18	23	30	1.98
48424479--48424530	26	2.0	26	100	0	104	42	23	19	15	1.89
48426912--48426968	23	2.5	23	94	2	98	35	1	3	59	1.25
48427252--48427312	13	4.7	13	72	8	52	37	24	6	31	1.81
48427247--48427312	26	2.5	26	80	0	78	36	24	6	33	1.80
48431244--48431281	20	1.9	20	88	0	58	55	0	23	21	1.44
48442278--48442323	19	2.4	19	88	0	74	19	10	30	39	1.86
48446206--48446407	27	7.6	27	86	5	259	30	28	15	26	1.96
48446206--48446407	55	3.8	53	83	7	248	30	28	15	26	1.96
48453881--48454083	27	7.6	27	85	5	259	30	28	15	26	1.96
48453881--48454082	107	1.9	108	89	5	320	30	28	15	25	1.96
48457624--48457661	12	3.2	12	92	0	58	21	44	0	34	1.52
48470265--48470449	40	4.6	40	95	1	302	22	22	28	26	1.99
48470261--48470481	80	2.8	79	86	7	295	25	21	26	26	2.00
48470708--48470751	22	2.0	21	83	16	54	31	18	13	36	1.90
48476909--48477060	40	3.8	40	87	2	198	25	27	21	25	1.99
48484577--48484728	40	3.8	39	84	6	171	25	28	21	24	1.99
48488031--48488055	11	2.3	11	100	0	50	88	0	12	0	0.53
48489244--48489468	40	5.6	40	93	1	355	23	22	27	26	2.00
48489244--48489500	80	3.2	80	88	3	342	24	22	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48489244--48489500	120	2.2	120	86	4	351	24	22	26	26	2.00
48503713--48503777	30	2.2	30	88	0	94	21	30	26	21	1.98
48513530--48513606	6	12.7	6	70	16	52	16	5	2	75	1.10
48513528--48513587	11	5.6	11	83	15	81	20	5	0	75	0.99
48513528--48513587	20	2.8	22	85	11	81	20	5	0	75	0.99
48521968--48522008	21	2.0	21	95	0	73	39	21	17	21	1.93
48522079--48522133	21	2.6	21	91	5	85	23	23	32	20	1.98
48532133--48532200	35	1.9	35	88	5	102	17	13	25	44	1.85
48532134--48532214	35	2.3	36	81	12	98	17	13	24	44	1.85
48534780--48535001	27	8.3	27	80	5	182	39	19	9	31	1.84
48534805--48535037	27	8.7	27	78	6	159	38	19	9	32	1.85
48535026--48535268	81	3.0	80	84	3	290	37	18	19	24	1.94
48535023--48535271	27	9.2	27	83	2	259	37	18	19	24	1.94
48535515--48535565	27	1.9	26	84	4	66	17	27	19	35	1.94
48535605--48535664	27	2.3	27	85	2	77	21	23	20	35	1.96
48535784--48535846	18	3.4	18	73	16	58	20	14	14	50	1.77
48541900--48541983	35	2.4	35	86	4	107	19	10	25	45	1.82
48541928--48541994	35	1.9	35	84	0	89	22	8	26	41	1.83
48542821--48542850	12	2.5	12	100	0	60	26	33	23	16	1.96
48547114--48547151	16	2.4	16	86	4	60	57	2	7	31	1.41
48553996--48554074	6	12.8	6	72	15	63	49	13	18	17	1.80
48553996--48554074	31	2.5	31	89	0	122	49	13	18	17	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48554214--48554277	33	2.0	32	84	3	83	35	20	23	20	1.96
48554293--48554344	27	2.0	26	84	3	68	34	21	26	17	1.95
48554579--48554908	27	12.2	27	90	1	428	40	8	20	30	1.82
48554902--48555054	27	5.7	26	78	9	121	28	7	22	40	1.82
48554886--48555062	54	3.3	53	77	7	178	29	7	22	40	1.82
48554886--48555060	81	2.2	80	78	5	183	29	7	22	40	1.81
48556718--48556749	16	1.9	17	93	6	57	43	15	9	31	1.78
48557456--48557491	9	4.0	9	100	0	72	33	11	0	55	1.35
48560297--48560569	48	5.7	46	78	6	235	27	17	29	25	1.97
48560289--48560567	96	2.9	95	86	4	373	27	16	29	25	1.97
48560297--48560569	144	1.9	144	82	1	341	27	17	29	25	1.97
48561873--48561902	15	2.0	15	93	0	51	26	0	16	56	1.40
48562522--48562646	56	2.2	56	92	0	214	27	13	25	33	1.93
48562522--48562679	56	2.8	56	87	5	196	25	13	25	34	1.94
48570076--48570122	23	2.0	23	83	8	58	44	21	19	14	1.86
48575001--48575123	38	3.2	38	87	2	165	20	20	26	32	1.97
48574972--48575123	38	3.9	38	84	3	160	23	21	25	30	1.99
48575290--48575322	15	2.2	15	100	0	66	45	12	18	24	1.83
48584382--48584436	29	2.0	28	89	7	85	36	21	12	29	1.91
48594526--48594586	27	2.3	27	82	0	77	27	24	6	40	1.80
48594620--48594749	54	2.4	54	79	7	140	40	20	10	29	1.86
48594648--48594772	54	2.3	55	86	2	164	41	20	8	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48594672--48594830	54	2.9	54	81	3	167	40	17	9	32	1.82
48594648--48594837	27	7.0	27	73	10	120	39	17	10	33	1.83
48594888--48594979	27	3.4	27	83	3	105	36	19	22	20	1.95
48595781--48595929	52	2.9	52	94	2	266	28	24	22	25	1.99
48595781--48595929	26	5.8	26	88	0	221	28	24	22	25	1.99
48596074--48596165	42	2.2	42	86	0	121	30	14	21	33	1.93
48596189--48596266	31	2.5	31	93	0	129	29	17	25	26	1.98
48599717--48599893	48	3.7	47	79	10	198	27	20	29	22	1.99
48599714--48599888	96	1.8	96	88	2	271	27	20	29	22	1.99
48603198--48603493	51	5.9	49	82	3	324	26	18	26	29	1.98
48603355--48603437	26	3.3	26	64	24	68	26	14	27	31	1.95
48603254--48603531	150	1.8	152	83	4	366	27	17	25	29	1.98
48606856--48607223	56	6.6	56	84	2	479	27	15	22	33	1.94
48606856--48607225	168	2.2	168	91	0	596	28	15	22	33	1.94
48610348--48610474	59	2.2	59	95	1	238	29	3	22	44	1.69
48610351--48610443	29	3.2	29	67	19	84	31	2	23	43	1.66
48612870--48612909	21	1.9	21	89	0	62	37	20	2	40	1.66
48615588--48615624	18	2.1	19	90	10	60	29	8	27	35	1.85
48617263--48617310	25	1.9	25	95	0	87	33	8	22	35	1.84
48617262--48617300	13	3.1	13	77	7	53	35	7	20	35	1.81
48621897--48621933	18	2.1	19	90	10	60	29	8	27	35	1.85
48627490--48627597	41	2.7	40	84	2	144	25	17	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48628647--48628694	12	4.1	12	81	2	53	27	39	25	8	1.84
48628643--48628693	24	2.1	25	85	3	68	27	41	23	7	1.82
48631098--48631199	6	16.8	6	75	17	95	50	13	16	19	1.78
48631077--48631199	30	4.1	30	83	5	140	48	13	17	19	1.80
48631317--48631382	27	2.5	26	82	7	78	39	22	21	16	1.92
48631335--48631390	27	2.1	27	86	6	78	35	21	25	17	1.95
48631341--48631397	27	2.1	27	83	6	71	36	26	21	15	1.93
48631704--48631783	27	3.0	26	88	3	106	37	21	21	20	1.94
48631982--48632176	27	7.3	27	85	1	230	26	18	18	35	1.95
48632181--48632641	81	5.7	82	85	4	580	40	9	21	27	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325