genome.fa.s3.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  158  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50699308--50699438	16	7.2	17	69	21	54	64	1	2	31	1.15
50701346--50701392	24	1.9	25	87	12	71	51	0	0	48	1.00
50714469--50714544	38	2.0	38	100	0	152	31	18	2	47	1.62
50718801--50718858	28	2.1	27	83	3	71	31	13	25	29	1.94
50718800--50718985	27	6.6	27	77	10	165	27	15	27	30	1.96
50726983--50727160	27	6.6	27	85	3	214	26	14	28	30	1.95
50726984--50727139	82	1.9	81	89	3	242	26	14	28	30	1.95
50726980--50727160	82	2.2	81	84	2	238	27	14	27	30	1.95
50731050--50731195	73	2.0	73	100	0	292	28	15	12	43	1.82
50731450--50731498	24	2.0	24	100	0	98	40	8	8	42	1.64
50743693--50743796	46	2.3	45	83	9	122	30	18	26	24	1.98
50766346--50766402	26	2.2	26	80	3	60	28	19	19	33	1.96
50769790--50769818	12	2.4	12	100	0	58	27	31	24	17	1.97
50777974--50778021	24	2.0	24	87	0	69	20	27	16	35	1.94
50781046--50781253	39	5.3	39	88	0	290	28	28	22	20	1.98
50786970--50787226	39	6.5	39	90	2	399	28	29	22	19	1.98
50799976--50800078	37	2.8	37	95	0	179	25	32	19	23	1.98
50800219--50800412	48	4.0	48	96	0	352	30	29	6	33	1.83
50804851--50804929	27	2.9	27	90	0	113	30	17	17	34	1.94
50804894--50805279	27	14.4	27	78	8	256	31	9	20	38	1.84
50804897--50805280	54	7.2	54	77	6	327	31	9	20	38	1.84
50804896--50805286	107	3.7	107	84	4	443	31	9	20	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50808012--50808133	47	2.6	47	80	1	138	31	29	15	23	1.95
50810523--50810826	41	7.4	41	89	2	425	35	22	23	18	1.96
50810989--50811022	14	2.4	15	85	14	54	32	0	23	44	1.54
50811888--50811919	15	2.1	15	94	0	55	59	0	9	31	1.29
50814679--50814929	132	1.9	133	97	0	477	20	9	17	51	1.73
50816997--50817036	21	1.9	21	94	0	71	30	10	12	47	1.74
50817893--50817932	21	1.9	21	94	0	71	30	10	12	47	1.74
50818344--50818383	21	1.9	21	89	0	62	27	10	15	47	1.77
50817455--50836028	460	40.8	460	96	2	34707	34	11	11	42	1.77
50819696--50819739	21	2.1	21	91	4	72	29	9	11	50	1.69
50820589--50820628	21	1.9	21	94	0	71	30	10	12	47	1.74
50821918--50821957	21	1.9	21	94	0	71	30	10	12	47	1.74
50822368--50822407	21	1.9	21	89	0	62	27	10	15	47	1.77
50822828--50822867	21	1.9	21	89	0	62	27	10	15	47	1.77
50823724--50823763	21	1.9	21	94	0	71	30	10	12	47	1.74
50824613--50824652	21	1.9	21	94	0	71	30	10	12	47	1.74
50825084--50825123	21	1.9	21	89	0	62	27	10	15	47	1.77
50825541--50825580	21	1.9	21	94	0	71	30	10	12	47	1.74
50826002--50826041	21	1.9	21	89	0	62	27	10	15	47	1.77
50826462--50826501	21	1.9	21	89	0	62	27	10	15	47	1.77
50826922--50826961	21	1.9	21	89	0	62	27	10	15	47	1.77
50824175--50836028	921	12.9	921	98	0	22841	34	11	11	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50827383--50827422	21	1.9	21	89	0	62	27	10	15	47	1.77
50827844--50827883	21	1.9	21	89	0	62	27	10	15	47	1.77
50828304--50828343	21	1.9	21	94	0	71	30	10	12	47	1.74
50828764--50828803	21	1.9	21	94	0	71	30	10	12	47	1.74
50829225--50829264	21	1.9	21	89	0	62	27	10	15	47	1.77
50829685--50829724	21	1.9	21	89	0	62	27	10	15	47	1.77
50830145--50830184	21	1.9	21	89	0	62	27	10	15	47	1.77
50830606--50830644	21	1.9	21	89	5	62	28	10	12	48	1.74
50831063--50831102	21	1.9	21	89	0	62	27	10	15	47	1.77
50831524--50831563	21	1.9	21	89	0	62	27	10	15	47	1.77
50831985--50832024	21	1.9	21	89	0	62	27	10	15	47	1.77
50832445--50832484	21	1.9	21	89	0	62	27	10	15	47	1.77
50832904--50832943	21	1.9	21	89	0	62	27	10	15	47	1.77
50833365--50833404	21	1.9	21	89	0	62	27	10	15	47	1.77
50833825--50833864	21	1.9	21	89	0	62	27	10	15	47	1.77
50834285--50834324	21	1.9	21	89	0	62	27	10	15	47	1.77
50834741--50834780	21	1.9	21	94	0	71	30	10	12	47	1.74
50835635--50835673	21	1.9	21	89	5	62	28	10	12	48	1.74
50841811--50841855	21	2.1	21	95	0	81	22	17	60	0	1.37
50842153--50842356	44	4.7	44	84	4	261	29	17	21	31	1.96
50842162--50842356	87	2.2	88	85	2	259	30	16	20	31	1.95
50842194--50842400	87	2.4	87	83	0	243	29	19	20	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50842344--50842440	44	2.2	43	90	3	158	35	24	19	20	1.96
50842152--50842440	131	2.2	131	78	4	289	31	19	20	29	1.97
50844196--50844373	27	6.6	27	74	6	119	28	16	26	29	1.97
50844193--50844373	82	2.2	81	81	4	204	28	16	25	29	1.97
50852206--50852383	27	6.6	27	74	6	119	28	16	26	29	1.97
50852203--50852383	82	2.2	81	81	4	204	28	16	25	29	1.97
50856177--50856356	46	3.9	46	83	2	227	21	23	14	40	1.90
50856282--50856451	45	3.8	45	86	3	189	21	23	18	36	1.95
50866627--50866676	21	2.4	20	78	15	57	40	4	10	46	1.56
50874707--50874731	13	1.9	13	100	0	50	16	24	36	24	1.94
50876425--50876680	80	3.2	80	90	3	376	22	22	28	26	1.99
50876425--50876654	40	5.8	40	94	1	365	22	22	29	26	1.99
50879304--50879363	27	2.3	26	85	2	75	36	20	21	21	1.95
50882275--50882459	40	4.7	40	80	7	191	24	21	27	26	1.99
50882328--50882482	79	2.0	79	83	7	199	25	20	27	27	1.99
50884626--50884850	49	4.5	49	78	7	247	25	17	25	31	1.97
50886880--50886928	22	2.0	26	85	14	70	30	4	4	61	1.33
50890795--50890865	34	2.1	34	100	0	142	14	14	29	42	1.84
50893202--50893298	43	2.3	43	85	0	131	32	16	24	25	1.96
50894079--50894186	31	3.5	31	87	0	153	23	23	17	36	1.95
50894410--50894499	25	3.6	25	93	1	155	22	24	27	25	2.00
50894546--50894583	11	3.6	11	79	13	53	31	18	13	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50894630--50894677	25	1.9	25	86	0	69	29	16	22	31	1.96
50899114--50899286	46	3.8	45	77	15	192	20	21	28	29	1.98
50899111--50899281	93	1.8	93	93	0	297	20	21	29	28	1.98
50907602--50907912	47	6.5	47	94	2	532	33	7	28	30	1.85
50907602--50907912	96	3.3	96	95	2	576	33	7	28	30	1.85
50907886--50907929	20	2.3	18	85	14	70	38	0	22	38	1.55
50907891--50907932	20	2.1	20	100	0	84	42	0	19	38	1.51
50907803--50908019	116	1.9	116	97	0	407	34	7	27	31	1.84
50907850--50907979	69	1.9	67	93	3	224	35	6	26	32	1.81
50907701--50908120	210	2.0	208	95	0	759	33	8	29	29	1.86
50907756--50908066	163	1.9	163	97	0	586	33	7	28	30	1.85
50907919--50908121	47	4.3	47	91	0	316	32	8	30	28	1.88
50910002--50910044	17	2.5	17	100	0	86	25	9	30	34	1.87
50911457--50911629	46	3.8	45	76	15	165	21	20	28	29	1.98
50911454--50911624	93	1.8	93	89	0	270	21	21	29	28	1.98
50917317--50917400	31	2.7	31	90	1	134	23	25	17	33	1.97
50917607--50917689	25	3.4	24	85	8	87	25	24	21	28	1.99
50917624--50917713	25	3.6	26	86	10	118	25	23	25	25	2.00
50917760--50917797	11	3.6	11	79	13	53	31	18	13	36	1.89
50917844--50917891	25	1.9	25	82	0	60	29	16	20	33	1.95
50923886--50924007	50	2.5	49	84	5	151	27	22	14	35	1.94
50935217--50935468	40	6.3	40	89	3	321	23	19	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50938548--50938773	48	4.7	47	79	9	183	29	18	27	24	1.98
50938407--50938773	47	7.8	46	71	13	191	29	17	29	23	1.97
50938550--50938773	96	2.3	98	82	10	257	29	18	27	24	1.98
50939926--50939965	21	2.0	21	85	14	57	12	42	25	20	1.86
50942154--50942224	36	2.0	36	100	0	142	42	11	8	38	1.71
50945401--50945455	27	2.0	27	100	0	110	30	10	29	29	1.91
50950826--50950910	30	2.8	30	87	0	116	32	7	24	35	1.83
50951250--50951466	46	4.6	47	82	7	182	28	17	30	23	1.97
50951381--50951610	48	4.8	48	74	7	178	27	16	28	27	1.97
50951385--50951610	98	2.3	96	79	7	235	28	16	28	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325