genome.fa.s3.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  124  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39746224--39746465	48	5.1	48	77	12	239	27	23	19	28	1.99
39750980--39751013	17	2.0	17	94	0	59	38	17	14	29	1.90
39753064--39753120	26	2.2	26	80	3	60	26	17	19	36	1.94
39755067--39755110	19	2.4	18	85	7	54	40	9	0	50	1.34
39759774--39759837	24	2.6	25	90	2	94	29	17	23	29	1.97
39767674--39767710	17	2.2	17	90	0	56	51	10	16	21	1.74
39771470--39771512	23	1.9	22	85	4	59	51	25	4	18	1.66
39772177--39772347	43	4.0	43	73	14	122	32	24	15	26	1.95
39772177--39772297	43	2.8	44	76	9	126	31	24	17	26	1.97
39777299--39777345	22	2.2	21	81	7	58	42	2	25	29	1.67
39782465--39782532	33	2.1	33	91	0	109	27	10	13	48	1.74
39783494--39783748	55	4.8	54	77	11	224	37	16	24	21	1.94
39783940--39783970	16	1.9	16	93	0	53	41	0	22	35	1.54
39787992--39788039	25	1.9	25	82	0	60	37	8	18	35	1.81
39803492--39803522	12	2.7	12	95	5	55	19	6	0	74	1.03
39805239--39805423	40	4.7	40	87	2	259	26	28	22	23	1.99
39811644--39811716	27	2.7	27	85	6	105	36	16	16	30	1.91
39815452--39815522	27	2.6	27	84	6	99	42	22	7	28	1.79
39821401--39821533	69	1.9	70	90	1	214	32	14	16	36	1.89
39823006--39823457	47	9.6	47	94	0	742	33	8	29	28	1.86
39826028--39826139	27	4.1	27	79	12	104	16	25	21	36	1.94
39826028--39826139	54	2.1	54	81	3	127	16	25	21	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39828988--39829086	40	2.4	41	81	11	112	28	18	26	27	1.98
39830104--39830175	32	2.2	32	92	0	117	30	30	18	20	1.96
39834109--39834142	17	2.0	17	100	0	68	29	5	17	47	1.71
39843492--39843549	19	3.0	19	82	2	71	6	24	24	44	1.77
39846198--39846369	93	1.8	93	94	0	308	28	29	20	20	1.98
39846191--39846366	46	3.8	46	79	12	207	29	29	20	20	1.98
39846240--39846378	47	3.0	46	75	16	144	29	28	19	22	1.98
39851929--39851976	24	2.0	24	91	0	78	16	35	4	43	1.67
39858454--39858494	18	2.3	18	91	8	66	21	46	17	14	1.84
39860338--39860418	43	1.9	43	87	7	121	28	22	22	27	1.99
39860336--39860437	43	2.4	41	78	18	111	24	21	25	28	1.99
39864755--39864808	27	2.0	27	96	0	81	37	14	20	27	1.92
39866285--39866333	20	2.5	20	80	16	57	16	6	14	63	1.49
39868918--39869049	40	3.3	40	91	2	194	27	22	25	25	2.00
39868935--39869072	39	3.5	39	89	1	177	26	22	26	24	2.00
39875568--39875665	39	2.5	39	94	0	169	24	23	28	23	2.00
39889552--39889576	6	4.2	6	100	0	50	16	0	0	84	0.63
39891806--39891830	13	1.9	13	100	0	50	16	44	24	16	1.86
39899174--39899344	93	1.8	93	93	2	299	28	29	21	21	1.98
39899171--39899341	46	3.7	46	80	14	201	28	28	21	21	1.98
39911982--39912046	34	1.9	33	81	9	78	24	23	24	27	2.00
39915698--39915775	40	2.0	40	92	0	129	21	20	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39920010--39920058	18	2.7	18	78	9	64	61	0	34	4	1.15
39923419--39923457	19	2.1	19	85	0	51	71	7	5	15	1.26
39923921--39923961	20	2.0	21	90	4	66	36	14	19	29	1.92
39924083--39924143	28	2.2	28	93	0	104	31	8	26	34	1.86
39928640--39929264	208	3.0	208	96	0	1151	25	20	23	30	1.98
39935057--39935106	20	2.5	20	83	0	64	26	30	8	36	1.85
39941054--39941173	34	3.5	34	82	0	141	20	12	30	37	1.89
39941304--39941369	27	2.5	26	80	12	71	34	22	15	27	1.94
39945122--39945236	27	4.3	26	87	5	149	36	23	23	16	1.94
39945122--39945236	54	2.1	54	88	3	169	36	23	23	16	1.94
39952556--39952665	26	4.2	26	95	2	177	36	24	4	34	1.76
39954893--39954978	40	2.2	39	89	2	127	29	27	17	25	1.97
39958303--39958352	25	2.0	25	100	0	100	40	20	8	32	1.81
39958940--39959050	43	2.6	43	82	5	152	32	26	14	27	1.95
39959007--39959182	50	3.6	49	80	9	155	23	29	18	28	1.97
39959062--39959182	50	2.4	50	87	2	163	19	32	18	29	1.96
39962384--39962557	46	3.8	46	81	13	221	20	21	29	28	1.98
39962379--39962549	93	1.8	93	94	0	306	21	21	28	28	1.98
39968671--39968891	40	5.7	40	85	8	269	24	27	22	24	2.00
39968671--39968891	115	1.9	120	83	8	294	24	27	22	24	2.00
39974445--39974508	32	2.0	32	100	0	128	25	28	21	25	1.99
39979842--39979950	40	2.8	40	94	2	186	22	26	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39979843--39979989	40	3.7	40	85	8	162	23	26	23	26	2.00
39992802--39992828	14	1.9	14	100	0	54	44	11	0	44	1.39
40000910--40000967	26	2.2	26	93	0	98	34	5	24	36	1.78
40004671--40004797	50	2.6	50	84	2	159	29	17	25	27	1.97
40004673--40004812	50	2.9	49	82	2	156	28	18	25	27	1.98
40007712--40007806	9	10.6	9	88	0	136	24	7	22	46	1.77
40008786--40008957	46	3.7	45	77	7	175	24	28	19	27	1.98
40013212--40013257	20	2.3	20	84	0	56	36	13	0	50	1.41
40028278--40028334	9	5.9	9	73	15	51	35	8	21	35	1.84
40028276--40028338	20	3.2	20	95	0	117	36	12	19	31	1.89
40028392--40028517	24	5.4	24	92	4	188	30	19	22	26	1.98
40028723--40028786	31	2.1	31	90	0	101	35	15	23	25	1.94
40036252--40036299	25	1.9	25	91	0	78	35	25	14	25	1.94
40036338--40036394	9	5.9	9	73	15	51	35	8	21	35	1.84
40036336--40036398	20	3.2	20	95	0	117	36	12	19	31	1.89
40036451--40036556	24	4.4	24	87	3	133	29	22	20	27	1.99
40036453--40036549	47	2.1	47	94	0	167	28	22	19	28	1.98
40036764--40036827	31	2.1	31	90	0	101	35	15	23	25	1.94
40041534--40041706	49	3.6	48	78	5	179	27	17	27	26	1.98
40041398--40041657	142	1.9	136	81	7	315	29	15	28	27	1.96
40059169--40059297	49	2.6	49	82	4	163	30	20	26	22	1.99
40084586--40084646	30	2.0	30	83	0	77	32	22	4	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40085496--40085583	5	16.8	5	70	25	58	19	4	1	75	1.05
40085496--40085540	20	2.2	20	92	4	72	20	2	0	77	0.87
40085495--40085541	21	2.2	22	85	11	71	19	2	0	78	0.85
40085501--40085563	6	10.2	6	74	6	54	17	4	1	76	1.04
40085495--40085583	12	7.9	11	72	15	60	19	4	1	75	1.04
40088476--40088517	21	2.0	22	95	4	77	45	0	7	47	1.30
40096446--40096483	18	2.1	18	95	0	67	65	0	18	15	1.27
40097906--40097982	38	2.0	38	97	0	145	31	12	16	38	1.87
40101741--40101788	20	2.4	20	100	0	96	8	31	39	20	1.82
40110705--40111126	146	2.9	147	89	0	630	26	12	20	40	1.87
40119014--40119298	27	10.6	27	84	4	346	41	20	8	30	1.81
40119037--40119298	80	3.3	80	89	2	366	41	19	8	30	1.81
40119662--40119736	27	2.8	27	78	10	73	25	14	16	44	1.85
40123245--40123427	27	6.8	27	87	1	174	23	18	18	39	1.92
40123241--40123427	54	3.5	52	84	5	212	23	18	18	39	1.92
40123245--40123424	81	2.2	81	85	4	231	23	18	18	39	1.92
40125458--40125501	15	2.9	15	80	10	54	72	4	4	18	1.19
40132711--40132814	52	2.0	52	94	0	181	23	16	28	31	1.96
40134778--40134943	43	3.9	43	76	2	147	26	14	24	34	1.94
40144951--40145030	27	3.0	27	82	10	101	33	15	21	30	1.94
40144959--40145089	54	2.4	54	77	7	133	33	12	24	29	1.92
40144986--40145104	27	4.4	28	73	10	104	34	13	25	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40151673--40151715	6	7.2	6	91	0	68	18	2	0	79	0.85
40153608--40153709	22	4.5	23	79	9	95	24	20	17	37	1.94
40153863--40153920	20	3.0	20	87	7	66	39	3	20	36	1.70
40153875--40153920	20	2.3	20	96	0	83	36	2	21	39	1.66
40153906--40154001	20	4.8	20	85	6	115	34	10	15	39	1.82
40153886--40154001	60	1.9	60	81	11	139	35	8	16	39	1.79
40153906--40153976	11	7.0	11	68	18	55	33	9	15	40	1.80
40157539--40157617	37	2.1	37	83	4	97	25	30	18	25	1.98
40157736--40158208	47	10.1	47	94	0	804	28	30	9	32	1.88
40167238--40167262	11	2.3	11	100	0	50	8	28	0	64	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325