genome.fa.s3.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  96  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30864443--30864476	9	3.8	9	88	0	50	58	26	2	11	1.47
30864983--30865100	47	2.5	48	87	5	159	24	30	22	22	1.99
30865166--30865287	46	2.6	46	82	11	144	22	27	20	29	1.98
30867832--30867886	15	3.7	14	81	16	58	63	16	7	12	1.50
30871537--30871587	26	2.0	26	92	0	84	31	9	21	37	1.86
30878952--30879002	26	2.0	26	96	0	93	29	9	25	35	1.88
30881950--30882079	47	2.7	49	86	5	176	22	32	19	26	1.97
30886783--30886879	50	1.9	50	85	0	131	24	22	23	28	1.99
30897571--30897821	40	6.3	40	92	2	368	24	22	26	26	2.00
30905668--30905881	39	5.4	40	89	5	296	24	22	27	25	2.00
30910355--30910396	14	3.1	14	86	3	59	71	0	4	23	1.05
30942913--30942942	15	2.0	15	93	0	51	50	33	13	3	1.58
30949915--30949946	14	2.3	14	100	0	64	21	28	28	21	1.99
30957540--30957767	40	5.7	40	93	0	377	24	27	22	25	2.00
30964275--30964305	15	2.1	15	93	0	53	3	12	32	51	1.56
30974018--30974202	79	2.3	81	83	9	229	25	27	22	24	2.00
30974018--30974202	40	4.7	40	80	12	211	25	27	22	24	2.00
30981811--30981994	39	4.6	41	79	11	188	25	27	22	24	2.00
30985756--30985980	49	4.5	49	84	2	261	29	26	17	26	1.97
30985743--30985980	99	2.4	101	82	2	275	28	26	17	26	1.98
30992248--30992311	28	2.3	28	86	2	85	14	45	26	14	1.82
30993271--30993579	146	2.2	145	81	9	343	25	31	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30993265--30993673	46	8.7	47	77	12	303	24	30	19	25	1.98
30993265--30993679	94	4.4	92	72	16	321	24	30	19	25	1.98
30996620--30996744	43	3.0	42	78	9	128	34	22	13	29	1.92
30996871--30996937	35	1.9	35	81	0	80	47	13	5	32	1.67
31000765--31000948	40	4.6	40	87	5	248	25	25	26	23	2.00
31008818--31008962	40	3.6	40	83	4	175	25	25	25	23	2.00
31016210--31016321	43	2.6	42	79	13	113	33	25	16	25	1.95
31020972--31021148	40	4.4	40	83	4	216	25	26	22	24	2.00
31032507--31032561	18	2.9	18	81	5	65	49	34	10	5	1.61
31033632--31033672	4	10.5	4	82	15	50	21	2	0	75	0.92
31033615--31033672	20	2.8	20	84	12	64	20	1	1	75	0.97
31045754--31046398	44	14.3	44	78	6	488	33	16	19	30	1.94
31045915--31046019	51	2.0	52	85	1	140	39	13	15	32	1.86
31045971--31046340	89	4.2	88	84	2	402	35	17	16	30	1.92
31045787--31046396	133	4.6	132	77	6	555	34	17	18	30	1.93
31048044--31048212	41	4.1	41	77	8	139	25	28	21	24	1.99
31048068--31048213	41	3.6	41	81	3	170	26	28	21	23	1.99
31056225--31056393	41	4.1	41	79	8	157	26	29	21	23	1.99
31056247--31056394	41	3.6	41	81	7	185	27	28	21	22	1.99
31064257--31064424	41	4.1	40	74	9	133	27	29	21	22	1.99
31064273--31064416	41	3.5	42	82	7	172	27	27	21	23	1.99
31067191--31067233	20	2.1	21	87	8	63	18	0	2	79	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31071949--31072047	50	2.0	50	95	0	180	29	10	24	36	1.88
31076812--31076851	12	3.5	11	90	6	62	67	2	2	27	1.16
31076844--31076889	15	3.0	16	81	9	60	45	0	2	52	1.13
31076923--31077209	38	7.3	39	67	17	112	42	2	4	49	1.37
31076958--31077009	15	3.6	15	80	12	56	44	0	1	53	1.11
31077077--31077128	15	3.6	15	80	12	56	44	0	1	53	1.11
31076842--31077244	120	3.4	120	97	0	754	42	1	4	50	1.34
31077461--31077530	16	4.4	16	85	0	86	27	32	2	37	1.72
31077773--31077811	16	2.4	16	86	4	60	61	5	2	30	1.31
31078763--31078839	35	2.2	35	86	4	102	45	25	3	24	1.70
31080901--31080939	21	1.9	21	85	15	55	41	5	2	51	1.38
31082245--31082492	80	3.1	80	88	0	343	12	27	19	40	1.87
31082243--31082491	20	12.4	20	82	0	264	12	27	19	40	1.87
31098971--31099051	40	2.0	40	100	0	162	27	14	9	48	1.76
31109688--31109851	43	3.8	43	81	6	172	31	24	17	26	1.97
31111899--31111937	21	1.9	20	89	5	60	17	30	41	10	1.83
31112783--31112837	27	2.0	27	96	0	101	16	25	21	36	1.94
31113195--31113377	48	3.8	48	78	4	179	27	25	16	29	1.97
31117702--31118084	47	8.1	47	94	2	651	32	9	29	29	1.88
31117702--31118084	143	2.7	140	86	8	501	32	9	29	29	1.88
31117702--31118177	96	4.9	96	87	7	665	32	9	29	28	1.88
31118070--31118098	14	2.1	14	100	0	58	20	27	31	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31117976--31118177	108	1.9	108	91	0	332	31	10	30	27	1.91
31118023--31118141	61	2.0	61	91	0	193	28	14	31	26	1.95
31120142--31120220	38	2.1	38	97	0	149	44	20	6	29	1.76
31123368--31123569	27	7.4	27	85	3	199	29	28	14	26	1.95
31123368--31123568	54	3.7	54	83	3	251	29	28	14	26	1.95
31123419--31123568	81	1.9	81	88	0	228	27	28	16	27	1.97
31131311--31131515	27	7.6	27	85	3	205	29	29	15	26	1.96
31131311--31131514	54	3.8	54	84	3	257	29	29	15	25	1.96
31131365--31131514	81	1.9	81	88	0	228	27	28	16	27	1.97
31133461--31133547	28	3.1	28	100	0	174	45	25	0	28	1.53
31137930--31137970	18	2.4	17	87	4	55	17	48	21	12	1.79
31137930--31137975	17	2.6	18	86	3	58	15	50	21	13	1.78
31145718--31145785	19	3.7	19	84	7	104	38	11	13	36	1.81
31145708--31145794	36	2.4	36	71	16	90	37	10	16	35	1.82
31149664--31149688	12	2.1	12	100	0	50	76	0	24	0	0.80
31152227--31152268	8	5.2	8	81	18	52	88	0	7	4	0.64
31153211--31153958	199	3.7	202	91	2	1202	31	18	21	29	1.96
31154028--31154192	87	1.9	86	83	7	217	32	17	22	27	1.96
31153790--31154302	261	2.0	256	86	2	713	32	16	23	27	1.96
31154585--31154635	19	2.9	17	81	13	59	37	9	17	35	1.83
31154595--31154637	19	2.1	21	91	8	72	37	9	18	34	1.83
31158102--31158154	27	2.0	27	85	7	72	18	22	18	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31159737--31160046	41	7.5	41	80	0	332	36	21	18	23	1.95
31159736--31160046	124	2.5	123	82	1	390	36	21	18	23	1.95
31160114--31160163	24	2.2	22	82	7	55	26	0	10	64	1.25
31160328--31160396	36	1.9	36	82	5	86	52	23	0	24	1.48
31160321--31160401	21	3.8	21	71	9	65	50	24	0	24	1.49
31160500--31160569	14	4.8	15	71	13	56	21	1	27	50	1.57
31160594--31160682	35	2.5	35	82	8	92	15	0	29	55	1.41
31160608--31160647	21	1.9	21	84	0	53	17	0	30	52	1.45
31160615--31160661	14	3.4	14	80	11	51	19	0	27	53	1.45
31160812--31160843	15	2.1	15	94	0	55	12	0	34	53	1.39
31161063--31161290	41	5.6	41	79	3	183	35	14	21	29	1.93
31161063--31161273	82	2.6	82	78	5	203	34	14	22	28	1.93
31161132--31161289	82	1.9	82	83	5	203	35	12	21	30	1.91
31164125--31164268	9	16.0	9	80	9	143	45	18	1	35	1.58
31169312--31169354	14	3.1	14	83	3	61	32	2	13	51	1.54
31172889--31172930	22	2.0	21	85	4	57	33	0	4	61	1.17
31182103--31182137	14	2.5	14	90	0	52	34	17	5	42	1.73
31183960--31184120	65	2.6	63	90	7	258	45	7	5	40	1.55
31188735--31188892	43	3.7	43	77	18	166	24	18	27	30	1.98
31191052--31191272	40	5.6	40	88	2	295	23	20	25	29	1.99
31193093--31193145	23	2.3	23	74	6	54	16	3	28	50	1.62
31195730--31195940	40	5.3	40	80	3	230	27	26	21	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31203823--31204041	40	5.6	40	81	5	241	25	26	22	25	2.00
31203823--31204041	79	2.8	79	84	5	257	25	26	22	25	2.00
31211952--31212158	40	5.2	40	81	2	238	26	27	22	24	2.00
31222542--31222684	42	3.3	43	76	14	118	24	20	24	30	1.98
31222530--31222701	43	4.0	43	73	15	158	23	19	25	31	1.98
31223230--31223282	23	2.3	23	74	6	54	16	3	28	50	1.62
31224583--31224641	19	3.0	20	85	7	77	1	33	0	64	1.04
31224587--31224641	14	3.8	15	88	7	69	1	34	0	63	1.05
31224587--31224641	5	11.4	5	84	7	69	1	34	0	63	1.05
31224830--31224869	16	2.4	16	79	4	53	22	0	0	77	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325