genome.fa.s3.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  165  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53425015--53425196	80	2.3	80	83	10	212	27	27	20	24	1.99
53437660--53437706	24	2.0	24	91	0	76	42	4	38	14	1.66
53439059--53439112	27	2.0	27	82	7	65	29	18	18	33	1.95
53443022--53443079	14	4.0	14	77	18	57	50	3	0	46	1.18
53443020--53443082	31	2.2	26	84	15	81	46	3	0	50	1.17
53444919--53445007	40	2.2	40	85	0	115	23	28	14	33	1.94
53451092--53451116	13	1.9	13	100	0	50	32	4	24	40	1.73
53451890--53451928	20	1.9	20	89	5	60	35	0	17	46	1.49
53452250--53452338	42	2.1	44	80	4	101	29	16	21	32	1.95
53452207--53452370	85	1.9	85	79	7	181	28	17	24	30	1.97
53456939--53457028	27	3.3	27	92	0	135	34	20	21	24	1.96
53457776--53457835	27	2.3	27	85	2	77	21	23	20	35	1.96
53464463--53464513	27	1.9	26	84	4	66	17	27	19	35	1.94
53475361--53475517	43	3.7	42	73	4	127	26	15	24	33	1.95
53480077--53480287	40	5.3	41	81	6	256	23	20	28	27	1.99
53480077--53480287	79	2.7	80	90	1	327	23	20	28	27	1.99
53488077--53488287	40	5.3	40	81	6	259	23	19	28	27	1.99
53488077--53488296	79	2.8	80	88	3	329	24	20	28	27	1.99
53494237--53494332	42	2.3	43	81	5	115	28	19	22	29	1.98
53494193--53494350	43	3.7	42	72	12	126	25	17	25	30	1.97
53496741--53496794	28	1.9	28	88	0	81	24	22	16	37	1.94
53496740--53496854	27	4.3	26	80	4	104	22	21	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53498603--53498634	14	2.4	14	90	10	50	15	15	40	28	1.88
53504477--53504590	27	4.3	27	84	6	135	19	21	21	37	1.94
53504477--53504590	54	2.1	53	85	4	149	19	21	21	37	1.94
53509182--53509400	39	5.6	39	85	9	270	25	28	22	23	1.99
53509182--53509401	77	2.8	79	84	8	283	25	28	22	23	1.99
53510518--53510685	54	3.2	53	90	8	270	22	22	9	45	1.81
53517277--53517419	40	3.6	40	85	3	173	24	27	24	23	2.00
53526886--53526910	5	5.0	5	100	0	50	20	0	0	80	0.72
53536467--53536626	39	4.1	39	93	0	257	23	31	22	22	1.98
53542588--53542816	49	4.7	49	84	3	264	24	24	19	31	1.98
53542868--53542983	43	2.6	46	89	8	193	24	31	16	28	1.96
53545590--53545638	23	2.1	23	88	0	71	28	16	32	22	1.95
53549359--53549401	22	2.0	22	86	9	61	55	18	0	25	1.42
53558537--53558758	40	5.6	40	91	0	356	26	27	22	24	2.00
53566614--53566795	40	4.6	40	91	6	264	26	26	21	24	1.99
53566614--53566795	80	2.3	80	92	2	296	26	26	21	24	1.99
53572887--53573058	93	1.8	93	96	0	317	27	29	21	20	1.98
53572880--53573055	46	3.8	46	79	12	216	28	29	21	20	1.98
53580434--53580608	46	3.8	46	76	13	178	29	28	20	22	1.98
53580441--53580612	93	1.8	93	91	0	281	28	27	20	22	1.99
53588510--53588597	29	3.1	29	86	1	124	26	12	27	34	1.92
53588508--53588616	57	1.9	57	81	3	130	27	11	28	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53592578--53592664	29	3.0	28	84	1	111	26	14	24	34	1.94
53592587--53592678	29	3.2	29	82	11	102	27	15	27	30	1.96
53597172--53597310	40	3.6	40	76	11	137	25	17	23	34	1.96
53597173--53597314	74	1.9	75	85	1	196	26	16	22	34	1.95
53597996--53598044	24	2.0	24	100	0	98	36	4	20	38	1.72
53601228--53601296	29	2.4	29	90	2	104	31	21	24	21	1.98
53601228--53601312	29	3.0	27	80	14	91	32	20	24	22	1.97
53607849--53608184	168	2.0	167	91	1	548	38	18	10	32	1.85
53611489--53611520	11	2.9	11	95	0	55	37	0	0	62	0.95
53612177--53612253	40	1.9	40	84	5	102	28	16	23	31	1.96
53612175--53612268	40	2.3	40	78	3	100	26	15	26	30	1.96
53617903--53617959	7	7.9	7	78	7	60	17	0	33	49	1.47
53617904--53617959	15	3.8	15	78	2	69	17	0	32	50	1.47
53622681--53622706	13	2.0	13	100	0	52	30	23	0	46	1.53
53623616--53623661	22	2.0	23	83	4	58	28	8	6	56	1.54
53626335--53626379	21	2.1	21	100	0	90	40	4	13	42	1.64
53630433--53630504	34	2.1	35	84	7	94	41	11	26	20	1.86
53643699--53643789	46	2.0	46	86	0	128	27	31	6	34	1.83
53643769--53644282	94	5.5	94	89	0	686	25	28	11	34	1.90
53643947--53644022	22	3.3	22	66	16	64	26	28	11	32	1.92
53644137--53644211	24	3.2	24	63	24	59	25	32	12	30	1.92
53643803--53644251	47	9.6	47	92	0	673	25	28	11	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53646963--53647008	23	2.0	23	100	0	92	43	8	4	43	1.55
53647983--53648098	27	4.3	27	87	0	151	36	19	19	24	1.95
53647991--53648093	54	1.9	54	92	2	172	34	19	22	23	1.96
53648321--53648403	27	3.1	26	87	5	112	19	21	21	37	1.94
53648511--53648569	22	2.7	22	81	0	64	20	25	22	32	1.98
53648632--53648713	32	2.6	32	82	3	85	23	18	24	34	1.96
53648727--53648833	27	4.0	26	79	7	99	18	23	19	38	1.93
53650537--53650571	16	2.2	16	100	0	70	37	11	14	37	1.82
53650717--53650741	9	2.8	9	100	0	50	24	20	36	20	1.95
53651042--53651147	27	4.0	26	77	3	86	35	16	18	28	1.93
53651372--53651451	27	3.0	26	87	3	97	20	23	20	36	1.95
53651498--53651545	20	2.4	20	75	0	51	10	16	31	41	1.82
53651562--53651620	22	2.7	22	81	0	64	20	25	22	32	1.98
53651778--53651885	27	4.0	26	83	5	126	18	22	21	37	1.94
53654071--53654185	27	4.3	27	86	4	135	36	17	20	26	1.94
53654409--53654471	27	2.3	26	91	5	99	17	22	25	34	1.95
53654814--53654921	27	4.0	27	84	5	130	17	23	21	37	1.94
53654814--53654921	54	2.0	53	85	1	144	17	23	21	37	1.94
53661855--53661999	40	3.6	40	80	9	154	24	23	27	24	2.00
53661854--53662005	80	1.9	80	82	5	191	25	23	27	23	2.00
53676516--53676715	27	7.4	27	88	0	274	35	19	21	24	1.96
53676716--53676768	26	2.0	25	82	13	63	24	22	18	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53678734--53678905	54	3.1	55	94	5	296	44	9	22	23	1.81
53680032--53680213	76	2.3	78	81	12	198	25	22	26	24	2.00
53680002--53680213	39	5.4	38	76	17	168	25	22	26	25	2.00
53680087--53680230	39	3.8	37	82	11	150	25	22	27	24	2.00
53684786--53684867	29	3.0	27	87	10	114	39	21	19	19	1.93
53702839--53702919	27	2.9	28	79	3	83	34	19	23	22	1.96
53703630--53703829	27	7.4	27	88	0	274	24	21	19	35	1.96
53719236--53719411	46	3.8	45	78	10	194	21	20	28	28	1.98
53719233--53719403	93	1.8	93	92	0	288	21	21	29	28	1.98
53720763--53720816	27	2.0	27	85	0	72	38	7	14	38	1.75
53724886--53725111	48	4.7	48	91	3	332	28	31	15	24	1.95
53724886--53725111	95	2.4	96	89	3	332	28	31	15	24	1.95
53727564--53727708	53	2.7	53	77	6	130	20	22	20	37	1.94
53739619--53739670	19	2.7	19	93	0	95	26	9	13	50	1.72
53739617--53739726	59	1.9	55	80	14	125	29	14	10	45	1.79
53739741--53739792	19	2.7	19	81	0	68	51	7	11	28	1.65
53741146--53741188	16	2.7	16	88	0	68	48	16	23	11	1.78
53741412--53741549	29	4.8	29	97	0	249	25	17	30	26	1.97
53744118--53744324	53	3.8	54	74	1	200	38	18	23	19	1.93
53750301--53750438	55	2.5	54	84	1	177	36	22	22	18	1.95
53753423--53753580	68	2.3	68	77	11	160	20	28	15	34	1.94
53759843--53760067	40	5.7	40	84	5	278	24	22	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53767857--53768002	40	3.7	40	93	1	240	23	21	28	26	1.99
53767861--53768035	80	2.2	79	84	6	228	26	20	28	25	1.99
53771779--53771813	18	1.9	18	88	0	52	31	14	17	37	1.89
53772303--53772367	26	2.5	27	87	5	89	36	23	23	16	1.94
53775131--53775276	75	1.9	75	98	0	283	32	27	15	24	1.96
53781836--53782011	56	3.1	56	83	0	226	27	14	22	35	1.93
53788460--53788584	51	2.5	51	83	0	160	40	12	5	41	1.67
53789491--53789780	96	3.0	96	92	1	456	12	33	17	35	1.88
53791476--53791600	51	2.5	51	82	0	151	40	12	6	40	1.69
53792416--53792560	40	3.6	39	82	10	184	24	13	27	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325