genome.fa.s3.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  132  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42224788--42224866	29	2.7	30	82	13	110	29	30	15	25	1.96
42246957--42247140	39	4.6	41	82	11	206	24	22	27	25	2.00
42246957--42247140	79	2.3	80	83	8	225	24	22	27	25	2.00
42247010--42247173	78	2.1	79	83	7	201	26	21	27	25	1.99
42254728--42254874	39	3.7	41	85	6	187	25	21	27	25	2.00
42254742--42254906	79	2.1	79	81	8	185	26	20	27	25	1.99
42261567--42261606	17	2.4	16	87	8	53	85	10	5	0	0.75
42262033--42262490	42	10.9	42	82	1	524	23	18	21	36	1.95
42263221--42263276	23	2.4	23	93	0	103	39	0	10	50	1.37
42263224--42263277	24	2.3	24	96	3	101	42	0	11	46	1.39
42263263--42263716	157	2.9	153	81	8	469	41	4	11	42	1.60
42263648--42263709	31	2.0	31	81	3	72	33	3	8	54	1.46
42266951--42267014	30	2.1	30	85	2	83	34	9	21	34	1.86
42267647--42267762	45	2.6	45	92	0	196	31	19	25	22	1.98
42267816--42267931	47	2.5	47	95	0	205	35	12	25	25	1.92
42267938--42268115	55	3.3	54	82	5	198	35	16	24	23	1.95
42270234--42270278	21	2.1	21	100	0	90	22	17	6	53	1.67
42272424--42272450	14	1.9	14	100	0	54	14	7	3	74	1.18
42275438--42275467	15	2.0	15	93	0	51	36	0	16	46	1.47
42275933--42276140	56	3.7	56	90	0	326	25	15	23	36	1.94
42275932--42276174	112	2.2	111	84	2	333	24	16	24	35	1.95
42282280--42282337	29	2.0	29	100	0	116	55	6	10	27	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42282608--42282872	56	4.7	56	89	1	379	26	13	23	36	1.93
42283184--42283303	56	2.1	56	95	0	213	45	10	22	22	1.82
42284431--42284613	79	2.3	81	84	7	232	24	22	27	25	2.00
42284432--42284615	40	4.6	40	83	9	216	23	22	28	25	2.00
42284484--42284648	79	2.1	79	84	6	210	25	21	27	25	1.99
42291086--42291205	56	2.1	56	98	0	231	45	9	23	22	1.81
42292333--42292515	79	2.3	81	84	7	232	24	22	27	25	2.00
42292334--42292517	40	4.6	40	83	9	216	23	22	28	25	2.00
42292386--42292550	79	2.1	79	84	6	210	25	21	27	25	1.99
42299076--42299102	14	1.9	14	100	0	54	44	11	0	44	1.39
42305791--42305910	43	2.8	43	68	10	111	31	27	11	29	1.92
42312873--42312987	43	2.7	43	83	5	135	23	13	25	37	1.92
42315435--42315811	47	7.9	47	93	1	628	29	30	8	31	1.87
42315435--42315811	143	2.7	143	94	0	650	29	30	8	31	1.87
42318628--42318968	40	8.6	40	90	0	506	26	28	21	24	1.99
42320347--42320725	49	7.9	49	93	1	626	29	30	8	31	1.87
42323282--42323751	94	5.0	94	96	0	850	30	10	18	39	1.85
42323805--42323867	24	2.6	24	100	0	126	23	17	26	31	1.97
42330675--42330809	70	1.9	70	92	0	225	30	13	19	37	1.90
42331584--42331757	43	4.1	42	85	6	217	24	21	31	22	1.98
42338331--42338502	43	4.0	43	87	3	231	26	20	29	22	1.99
42342224--42342347	43	2.9	43	83	7	146	23	12	28	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42354354--42354575	40	5.6	40	91	1	340	26	26	23	22	2.00
42357140--42357179	21	1.9	21	94	0	71	42	22	10	25	1.84
42360114--42360287	50	3.7	47	81	11	205	24	31	17	26	1.97
42360114--42360287	47	3.7	49	84	9	204	24	31	17	26	1.97
42364987--42365032	20	2.3	20	81	3	58	23	17	30	28	1.97
42365025--42365161	60	2.3	59	83	8	161	28	21	25	24	1.99
42365824--42365856	18	1.9	17	88	11	50	42	12	15	30	1.83
42367409--42367545	46	3.0	46	86	0	193	25	30	8	35	1.86
42367519--42367710	47	4.1	47	94	0	303	25	30	11	32	1.92
42367635--42367709	23	3.2	23	62	23	57	28	32	10	29	1.90
42371149--42371182	17	2.0	17	88	0	50	23	23	2	50	1.63
42374046--42374080	6	5.8	6	93	0	52	0	45	0	54	0.99
42376374--42376512	40	3.5	41	79	7	142	25	11	28	34	1.91
42376372--42376553	81	2.2	81	80	3	197	25	12	26	34	1.92
42378090--42378142	20	2.7	19	80	8	52	71	7	15	5	1.27
42381249--42381424	46	3.8	46	80	10	205	19	21	30	28	1.98
42381245--42381416	93	1.8	93	93	0	299	19	22	30	27	1.98
42385205--42385235	16	1.9	16	93	0	53	35	22	0	41	1.54
42385202--42385241	20	2.0	20	90	0	62	37	20	0	42	1.52
42385486--42385681	55	3.6	53	79	6	189	20	25	18	35	1.96
42403016--42403301	40	7.2	40	91	1	387	29	27	19	22	1.98
42411504--42411789	40	7.2	40	91	2	389	29	27	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42418258--42418382	46	2.7	46	93	0	205	20	20	28	29	1.98
42426468--42426640	46	3.7	46	75	14	185	23	21	25	29	1.99
42426464--42426635	93	1.8	93	91	2	283	22	22	26	28	1.99
42430356--42430540	40	4.6	39	81	6	187	24	21	27	26	1.99
42430410--42430563	79	1.9	79	82	7	188	25	19	27	27	1.99
42437405--42437577	46	3.7	46	80	13	219	21	21	28	28	1.98
42437402--42437572	93	1.8	93	96	0	315	21	21	29	28	1.98
42439110--42439138	14	2.0	15	93	6	51	41	6	24	27	1.80
42443610--42443711	27	3.8	27	82	7	118	31	22	16	29	1.96
42443698--42443920	27	8.3	27	72	10	161	31	10	18	39	1.85
42443696--42443938	81	3.0	80	82	4	265	32	10	18	37	1.85
42444149--42444185	17	2.1	18	90	5	58	18	40	24	16	1.90
42450803--42450832	12	2.5	12	100	0	60	43	6	13	36	1.70
42455891--42456008	43	2.7	43	80	5	139	42	23	11	22	1.86
42464745--42464772	14	2.0	14	100	0	56	14	0	14	71	1.15
42466631--42466663	15	2.2	15	94	0	57	42	27	3	27	1.70
42482332--42482506	46	3.8	49	80	13	183	28	28	21	22	1.99
42482337--42482506	92	1.8	92	93	1	295	28	28	21	21	1.99
42485942--42485997	28	2.0	28	100	0	112	46	17	7	28	1.75
42486718--42486846	44	3.0	43	78	8	136	33	25	17	24	1.96
42487939--42487963	13	1.9	13	100	0	50	40	24	4	32	1.73
42493243--42493468	49	4.6	49	84	3	308	30	26	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42495749--42496015	46	5.8	46	90	2	367	21	23	13	41	1.89
42514076--42514143	34	2.1	34	83	10	88	36	5	5	51	1.50
42524126--42524273	43	3.5	43	88	3	203	26	27	14	31	1.95
42527266--42527305	21	1.9	21	85	10	55	40	5	17	37	1.72
42529586--42529748	85	1.9	84	81	5	193	26	19	25	28	1.99
42535125--42535227	53	1.9	53	92	0	170	29	8	24	37	1.85
42538655--42538679	12	2.1	12	100	0	50	28	16	24	32	1.96
42539719--42539887	48	3.6	48	81	3	173	30	19	24	25	1.98
42553455--42553522	30	2.3	30	97	0	127	8	41	22	27	1.83
42557837--42558005	48	3.6	48	75	9	166	28	17	27	26	1.97
42563603--42563682	22	3.3	22	66	21	61	46	23	11	18	1.81
42563578--42563682	51	2.1	51	100	0	210	45	24	11	18	1.82
42565519--42565735	40	5.5	40	90	3	282	23	23	27	25	2.00
42568883--42568915	12	2.8	12	90	0	57	15	24	36	24	1.93
42574398--42574506	40	2.7	40	89	0	164	14	13	25	45	1.82
42578930--42578967	19	2.0	19	100	0	76	26	10	21	42	1.85
42585826--42585867	18	2.3	18	84	8	50	76	4	16	2	1.07
42594696--42594839	65	2.2	64	87	4	218	27	9	7	54	1.60
42601031--42601096	11	5.9	10	75	20	51	33	0	6	60	1.21
42601042--42601097	11	4.9	11	79	14	60	33	0	3	62	1.12
42618043--42618266	40	5.7	40	82	7	242	25	21	27	25	1.99
42618043--42618266	79	2.8	78	82	6	254	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42618123--42618299	79	2.3	79	82	4	198	25	22	28	24	1.99
42620495--42620673	27	6.6	27	82	5	180	30	27	15	26	1.96
42620495--42620673	55	3.3	54	82	5	207	30	27	15	26	1.96
42626821--42626863	22	2.0	22	90	9	70	20	13	27	37	1.91
42629149--42629279	49	2.7	49	82	4	149	26	21	28	23	1.99
42628961--42629329	93	3.9	93	76	12	290	27	19	28	24	1.98
42641516--42641872	191	1.9	191	90	0	579	43	3	15	37	1.65
42645691--42645772	37	2.2	37	91	0	128	39	26	13	20	1.90
42657769--42657982	51	4.2	52	92	1	310	14	28	33	22	1.94
42660093--42660129	12	2.7	14	88	12	51	54	0	8	37	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325