genome.fa.s3.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  110  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35554921--35555032	28	4.0	27	83	6	98	28	12	25	33	1.92
35558035--35558216	39	4.7	40	81	11	216	23	21	28	26	1.99
35558087--35558248	78	2.1	77	82	7	195	25	20	27	25	1.99
35589856--35589914	21	2.8	22	80	7	61	22	0	8	69	1.15
35589885--35589934	26	2.0	24	88	7	73	30	0	6	64	1.18
35600266--35600430	43	3.9	43	74	13	160	31	30	15	22	1.95
35605785--35605831	24	2.0	24	100	0	94	23	38	21	17	1.93
35609359--35609581	40	5.6	39	79	7	207	26	21	27	25	1.99
35609439--35609616	79	2.2	80	81	3	191	26	21	27	24	1.99
35613256--35613507	39	6.5	39	90	3	384	19	23	28	28	1.98
35613223--35613507	78	3.7	78	88	4	393	19	24	28	27	1.98
35618226--35618327	38	2.7	38	100	0	204	34	6	10	48	1.65
35618226--35618328	18	5.2	22	69	25	104	33	6	10	48	1.64
35622647--35622705	28	2.1	28	100	0	118	28	28	10	32	1.90
35626193--35626220	11	2.5	11	100	0	56	17	17	7	57	1.62
35638259--35638308	23	2.4	22	83	12	61	66	16	0	18	1.26
35639015--35639056	21	2.0	21	85	0	57	40	14	7	38	1.73
35642965--35642992	3	9.3	3	100	0	56	32	0	0	67	0.91
35643320--35643369	24	2.1	23	85	10	66	36	0	2	62	1.07
35643343--35643507	59	2.8	58	86	7	217	43	1	3	52	1.24
35643707--35643742	16	2.2	16	90	9	56	25	27	2	44	1.68
35644342--35644385	22	2.0	22	100	0	88	59	9	4	27	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35644691--35644740	26	2.0	25	88	4	73	52	8	4	36	1.50
35648993--35649063	34	2.0	38	86	10	105	33	4	22	39	1.74
35656211--35656467	40	6.5	40	87	2	315	25	28	23	22	2.00
35664458--35664545	27	3.3	27	79	4	97	36	20	18	25	1.95
35665194--35665245	27	2.0	26	84	3	68	17	26	21	34	1.95
35679935--35680153	60	3.6	60	75	5	176	27	24	14	33	1.94
35680851--35680978	28	4.6	28	77	9	100	21	21	15	40	1.91
35681479--35681545	22	3.2	20	71	19	55	47	23	13	14	1.80
35681453--35681546	42	2.2	42	83	7	118	47	24	12	14	1.79
35685618--35685708	34	2.6	35	78	16	91	29	25	24	20	1.99
35687625--35687690	32	2.1	32	91	0	105	45	21	10	22	1.82
35688354--35688409	18	3.1	18	82	12	62	32	16	7	44	1.74
35690685--35690710	13	2.0	13	100	0	52	61	7	7	23	1.49
35695949--35695973	13	1.9	13	100	0	50	16	36	40	8	1.77
35700979--35701015	18	2.1	18	95	5	67	16	10	8	64	1.47
35707977--35708103	47	2.7	46	82	8	143	30	18	26	24	1.98
35708319--35708496	54	3.3	53	85	1	230	38	7	24	30	1.82
35708319--35708510	27	7.1	27	83	2	208	38	8	24	29	1.84
35710871--35710940	25	2.8	25	91	0	104	22	24	25	27	2.00
35710971--35711001	16	1.9	16	93	0	53	29	16	25	29	1.96
35711143--35711357	27	8.0	27	88	1	306	24	19	20	35	1.96
35711350--35711417	27	2.5	26	85	4	91	30	7	22	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35711143--35711384	54	4.5	54	84	4	238	25	18	20	35	1.95
35711143--35711384	81	3.0	78	84	9	256	25	18	20	35	1.95
35713658--35713741	31	2.7	31	83	1	107	28	25	14	32	1.94
35713769--35713856	42	2.1	42	91	0	140	37	17	12	32	1.87
35714004--35714073	25	2.8	25	91	0	104	27	22	24	25	2.00
35714999--35715223	27	8.3	27	81	3	182	32	9	18	39	1.82
35715002--35715087	29	3.0	28	85	8	104	37	11	12	38	1.80
35714987--35715230	54	4.5	52	78	7	220	32	9	18	39	1.82
35715090--35715228	27	5.1	27	87	2	208	30	6	23	39	1.80
35715225--35715417	27	7.1	27	81	3	192	39	8	22	29	1.84
35715225--35715412	81	2.3	82	86	3	247	39	9	21	29	1.84
35717582--35717676	25	3.8	25	92	2	147	26	23	24	26	2.00
35717878--35718153	27	10.3	27	84	3	290	24	17	19	38	1.93
35717880--35718118	53	4.5	54	87	2	322	23	19	19	37	1.94
35717880--35718126	80	3.1	81	85	4	313	23	18	19	38	1.93
35717880--35718153	107	2.6	107	84	5	349	24	17	19	37	1.93
35718111--35718178	27	2.5	26	92	4	109	30	7	22	39	1.81
35722690--35722719	15	1.9	16	93	6	53	43	0	0	56	0.99
35726021--35726120	52	1.9	51	87	2	146	27	18	12	43	1.85
35733747--35733790	19	2.3	19	84	4	52	72	4	2	20	1.13
35739180--35739260	34	2.4	34	85	4	101	27	19	20	32	1.97
35742165--35742274	56	2.0	56	96	0	202	41	14	8	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35743841--35743899	20	3.0	20	74	0	55	50	18	16	13	1.77
35746744--35746801	29	2.0	29	100	0	116	31	17	17	34	1.93
35756151--35756253	40	2.6	40	90	0	170	25	29	24	21	1.99
35756135--35756293	40	4.0	38	80	8	149	27	28	22	22	1.99
35756118--35756291	80	2.2	78	81	7	199	26	28	22	22	1.99
35758424--35758465	22	1.9	22	100	0	84	23	57	9	9	1.60
35759510--35759557	24	2.0	24	91	0	78	25	20	25	29	1.99
35777947--35778123	40	4.5	40	76	12	143	25	27	20	25	1.99
35777968--35778071	39	2.6	39	89	4	156	27	28	19	24	1.98
35777968--35778124	40	4.0	40	82	10	171	26	28	21	24	1.99
35777968--35778124	79	2.0	80	82	6	194	26	28	21	24	1.99
35779292--35779470	85	2.1	85	100	0	358	26	27	8	37	1.85
35779844--35779876	17	1.9	17	93	0	57	39	0	6	54	1.25
35787203--35787431	49	4.6	49	76	5	176	23	17	27	31	1.97
35787252--35787439	100	1.9	100	88	4	290	23	20	26	30	1.98
35787267--35787474	100	2.1	100	80	3	222	24	19	26	29	1.98
35787813--35787873	30	2.0	30	100	0	122	47	3	13	36	1.59
35792678--35792727	25	2.0	25	84	0	64	30	26	20	24	1.98
35802348--35802629	48	5.9	48	89	2	404	28	31	16	24	1.96
35802315--35802629	96	3.3	97	86	2	411	27	30	16	24	1.97
35811752--35811827	30	2.5	30	86	0	107	14	28	36	19	1.91
35821145--35821192	20	2.4	21	86	13	66	35	2	4	58	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35825242--35825310	33	2.1	33	84	12	90	50	15	7	26	1.70
35829774--35829843	25	2.8	25	93	0	113	28	22	21	27	1.99
35830653--35830709	27	2.1	27	87	6	80	21	24	22	31	1.98
35830771--35830878	27	3.9	27	78	15	105	33	8	17	40	1.80
35830820--35830957	27	5.1	27	75	9	95	31	7	18	41	1.80
35830989--35831080	27	3.4	27	87	0	130	41	7	22	28	1.81
35833199--35833290	13	6.9	13	70	14	53	34	17	2	45	1.61
35833199--35833317	40	3.0	39	84	7	150	35	18	1	44	1.60
35833199--35833365	80	2.1	80	79	4	176	33	18	2	44	1.65
35834778--35834877	41	2.4	42	80	10	114	30	28	17	25	1.97
35841050--35841124	30	2.5	30	79	12	82	20	18	29	32	1.96
35841133--35841255	56	2.2	56	86	0	174	23	12	22	41	1.87
35843776--35844000	47	4.8	46	81	7	181	24	21	25	28	1.99
35843824--35843947	47	2.6	47	96	0	230	25	20	25	28	1.99
35850593--35850653	26	2.3	26	86	5	88	44	14	9	31	1.78
35854903--35854976	29	2.6	29	89	4	105	25	16	32	25	1.96
35859929--35860106	40	4.5	40	87	6	222	24	29	23	23	1.99
35881441--35881478	17	2.4	17	82	8	53	26	2	2	68	1.16
35884610--35884698	44	2.0	44	97	0	169	33	22	5	38	1.78
35886683--35886748	20	3.3	20	70	8	71	48	3	3	45	1.33
35886672--35886748	40	1.9	40	100	0	154	46	5	5	42	1.48
35888256--35888289	16	2.0	18	88	11	54	26	5	2	64	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35889118--35889157	6	6.8	6	85	5	55	62	0	20	17	1.33
35889118--35889157	17	2.3	18	86	4	55	62	0	20	17	1.33
35892122--35892164	16	2.8	15	77	16	52	60	2	0	37	1.10
35894428--35894528	51	2.0	52	80	9	118	50	0	5	42	1.33
35902194--35902245	21	2.5	21	90	0	86	32	26	26	13	1.94
35902351--35902407	23	2.5	23	97	0	105	22	24	0	52	1.47
35903774--35903828	27	1.9	30	82	10	71	3	20	5	70	1.22
35910124--35910173	21	2.3	22	93	6	84	34	28	26	12	1.92
35910099--35910185	21	4.0	23	77	10	83	37	24	21	16	1.93
35912064--35912239	27	6.6	27	81	6	178	30	28	14	26	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325