genome.fa.s3.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  163  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52604856--52605026	43	4.0	44	77	10	156	33	26	16	23	1.96
52606792--52606978	50	3.7	50	83	2	216	27	28	18	25	1.98
52606792--52606978	101	1.9	99	87	4	277	27	28	18	25	1.98
52609105--52609169	15	4.4	15	78	16	73	63	13	13	9	1.53
52609105--52609173	30	2.3	31	83	14	92	60	17	13	8	1.56
52611894--52611930	16	2.1	19	85	14	53	27	21	2	48	1.63
52612132--52612328	50	3.9	50	80	7	213	26	27	19	25	1.99
52612143--52612328	100	1.9	98	86	5	266	27	27	19	25	1.99
52616280--52616339	32	1.9	31	82	3	75	25	5	3	66	1.27
52619983--52620028	7	6.7	7	82	12	60	30	0	0	69	0.89
52620099--52620155	19	3.1	18	82	9	71	17	8	3	70	1.28
52622085--52622131	23	2.0	23	84	8	60	17	0	21	61	1.34
52622093--52622137	23	2.0	23	81	0	54	20	0	22	57	1.40
52622813--52622848	18	1.9	19	88	5	56	19	8	11	61	1.54
52654632--52654811	79	2.2	80	80	8	206	26	27	21	24	1.99
52654632--52654816	40	4.7	40	79	10	191	26	27	22	24	2.00
52665791--52666371	44	13.2	44	90	0	910	26	32	14	27	1.95
52666551--52667476	131	7.1	131	83	4	944	28	25	17	29	1.98
52666576--52667476	260	3.4	261	85	3	1026	27	24	17	29	1.98
52667132--52667452	43	7.3	44	64	10	127	25	23	19	30	1.98
52692708--52692891	39	4.6	41	81	11	197	25	22	27	25	2.00
52692709--52692891	40	4.6	40	81	8	205	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52692760--52692924	79	2.1	78	82	5	199	26	20	27	25	1.99
52700628--52700812	79	2.3	81	83	7	227	24	22	27	24	2.00
52700629--52700812	40	4.6	40	82	9	207	25	22	27	24	2.00
52700681--52700845	79	2.1	79	83	6	201	26	21	27	24	1.99
52705905--52706016	58	1.9	58	83	3	145	26	30	16	26	1.96
52705908--52706016	29	3.8	29	76	8	105	26	29	16	27	1.97
52708547--52708676	42	3.1	41	93	4	215	26	19	21	32	1.97
52716267--52716354	42	2.1	42	87	4	124	28	21	18	31	1.97
52724123--52724238	29	4.0	29	81	8	130	28	31	13	26	1.94
52724114--52724230	58	2.0	56	85	8	155	27	31	14	26	1.95
52725730--52725761	9	3.8	9	84	16	50	6	0	37	56	1.25
52725730--52725761	16	2.0	16	100	0	64	6	0	37	56	1.25
52726900--52727142	27	9.0	27	75	9	158	38	22	8	30	1.84
52726951--52727142	81	2.4	80	79	9	219	39	22	8	29	1.84
52727018--52727196	54	3.3	54	82	6	200	43	19	7	30	1.78
52727018--52727204	27	6.9	27	82	7	119	41	18	8	31	1.80
52727258--52727322	27	2.4	27	84	5	87	35	20	24	20	1.96
52728142--52728211	25	2.8	25	91	0	104	27	24	22	25	2.00
52728167--52728238	25	3.0	24	80	13	76	29	22	22	26	1.99
52728431--52728513	31	2.7	31	96	3	152	28	16	26	27	1.97
52734339--52734377	20	2.0	20	100	0	78	35	12	20	30	1.90
52734428--52734568	24	6.0	24	85	6	164	30	22	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52773116--52773222	54	2.0	54	98	0	205	32	9	19	38	1.84
52773200--52773310	44	2.6	43	83	9	138	23	16	25	35	1.95
52773200--52773372	43	4.0	43	76	12	160	24	16	24	34	1.96
52773203--52773366	86	1.9	85	80	10	192	25	16	24	34	1.95
52773581--52773646	29	2.3	29	81	5	71	30	25	1	42	1.64
52777311--52777367	29	2.0	29	80	16	66	19	31	10	38	1.86
52783648--52783791	39	3.7	39	88	0	189	22	20	29	27	1.99
52783648--52783811	78	2.1	78	81	3	188	21	20	28	28	1.98
52790236--52790351	39	3.0	39	97	0	214	21	19	30	28	1.98
52790236--52790426	78	2.5	78	81	5	201	20	20	29	29	1.98
52793388--52793448	30	2.0	30	83	0	77	31	22	8	37	1.84
52799454--52799601	67	2.2	67	83	8	176	33	17	27	21	1.96
52807112--52807151	18	2.1	20	90	9	66	15	45	27	12	1.82
52819013--52819050	19	2.0	20	85	15	53	39	23	0	36	1.55
52819280--52819450	93	1.8	93	92	2	290	29	28	20	22	1.98
52819275--52819447	46	3.7	46	79	11	201	30	27	20	22	1.98
52819870--52819929	30	2.0	30	83	0	75	33	25	3	38	1.72
52820891--52820951	30	2.0	30	83	0	77	31	24	6	37	1.81
52830605--52830689	43	2.0	43	100	0	170	49	18	5	25	1.70
52833754--52833823	27	2.6	27	83	0	86	34	20	24	21	1.97
52838350--52838426	36	2.1	36	95	0	136	24	16	32	25	1.96
52839586--52839622	19	2.0	19	94	5	67	21	5	13	59	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52839604--52839659	27	2.0	28	86	3	78	32	10	10	46	1.73
52844174--52844231	17	3.4	16	76	11	53	74	5	15	5	1.18
52845022--52845065	22	2.0	22	95	0	79	36	6	9	47	1.62
52847423--52847459	19	2.0	19	89	5	58	24	5	13	56	1.58
52847341--52847474	46	2.9	44	71	12	108	30	9	13	46	1.75
52849955--52850069	44	2.6	45	83	2	142	36	13	22	27	1.91
52857638--52857715	25	3.2	25	64	10	72	33	3	29	33	1.76
52857197--52857722	47	11.1	47	93	0	809	31	9	30	28	1.89
52857885--52857963	37	2.1	37	90	0	122	24	18	31	25	1.98
52859911--52859986	29	2.7	28	86	8	109	21	14	36	27	1.92
52861581--52861667	28	3.1	28	63	21	74	20	3	29	45	1.67
52861557--52861668	55	2.0	55	98	0	215	21	3	26	48	1.66
52861571--52861658	27	3.2	27	64	20	74	21	3	29	45	1.68
52863959--52864038	29	2.8	28	88	7	117	23	16	33	26	1.95
52868221--52868435	48	4.7	45	78	15	192	27	19	29	23	1.98
52872627--52872879	40	6.4	40	80	12	238	24	22	28	24	1.99
52872627--52872854	79	2.9	79	83	5	266	24	22	28	24	1.99
52880852--52880925	34	2.2	33	77	15	78	40	13	24	21	1.89
52880865--52880934	35	2.0	34	97	2	131	40	14	22	22	1.90
52882204--52882293	40	2.2	40	82	3	110	24	24	27	23	2.00
52885864--52885911	23	2.1	23	100	0	96	39	12	8	39	1.73
52896431--52896455	12	2.1	12	100	0	50	8	16	16	60	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52911224--52911286	16	3.9	16	89	0	90	39	3	26	30	1.72
52915900--52915964	32	2.0	32	93	0	112	15	23	7	53	1.67
52921700--52921816	62	1.9	62	87	5	177	43	1	2	52	1.25
52925010--52925125	43	2.7	43	81	7	146	34	25	14	25	1.94
52930088--52930669	48	12.0	48	92	1	966	35	6	26	31	1.82
52930088--52930669	194	3.0	194	95	0	1024	35	6	26	31	1.82
52930809--52930917	37	2.9	37	93	0	173	22	18	30	28	1.97
52933476--52933573	27	3.5	28	91	2	144	26	12	28	32	1.92
52933501--52933587	28	3.1	27	88	5	111	29	11	24	34	1.90
52938059--52938283	40	5.7	40	87	1	267	24	28	23	24	2.00
52938059--52938283	120	1.9	119	83	6	294	24	28	23	24	2.00
52946296--52946519	40	5.7	40	82	2	222	25	28	21	24	1.99
52946271--52946519	80	3.2	78	80	7	227	25	27	22	24	2.00
52951888--52951947	28	2.1	28	84	0	75	21	18	33	26	1.96
52952262--52952601	27	12.7	27	78	7	273	38	20	10	30	1.86
52952262--52952600	80	4.2	80	77	6	258	38	20	10	30	1.86
52952262--52952573	53	5.8	53	80	6	270	38	21	10	29	1.87
52952499--52952614	27	4.3	27	77	6	110	38	17	10	33	1.83
52952339--52952600	53	4.9	54	82	4	208	39	20	9	30	1.85
52952566--52952644	27	3.0	26	83	3	86	39	18	13	27	1.89
52955742--52955796	27	2.0	27	82	6	67	29	25	12	32	1.93
52963787--52963868	28	2.9	28	89	3	112	32	26	12	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52967855--52968089	96	2.4	97	86	1	319	25	28	18	28	1.98
52967855--52968090	48	4.9	48	79	4	251	25	28	18	27	1.98
52969287--52969408	43	2.9	42	85	2	154	31	23	16	27	1.96
52976743--52976769	5	5.4	5	100	0	54	40	0	0	59	0.98
52986098--52986179	24	3.5	22	72	20	67	31	25	30	12	1.92
52989566--52989869	47	6.4	47	90	1	419	27	29	7	34	1.85
52999761--52999927	43	3.9	43	73	7	126	29	14	21	33	1.94
53000692--53000739	22	2.2	21	85	14	62	18	4	27	50	1.65
53009242--53009340	28	3.5	28	88	0	153	29	32	14	24	1.94
53009327--53009423	40	2.4	40	87	0	131	31	27	18	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325