Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  206  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66702732--66702770
19
1.9
19
90
10
60
48
0
0
51
1.00
66703811--66703856
24
2.0
24
82
4
58
56
4
0
39
1.19
66705893--66706074
40
4.6
39
85
7
224
24
26
21
26
2.00
66714034--66714211
40
4.5
40
90
3
254
24
28
23
24
2.00
66717299--66717824
131
4.0
132
77
4
458
34
16
19
28
1.94
66718902--66718933
3
10.3
3
93
6
55
65
3
0
31
1.08
66720568--66720617
22
2.3
22
80
12
59
42
8
4
46
1.52
66722603--66722644
21
1.9
22
85
9
59
61
4
4
28
1.36
66725340--66725391
25
2.1
25
81
0
59
57
7
7
26
1.54
66726487--66726570
26
3.2
26
94
0
141
32
4
25
38
1.77
66731247--66731577
82
4.1
82
82
1
389
45
14
12
27
1.80
66731209--66731544
162
2.1
159
83
4
417
46
13
11
27
1.79
66732254--66732305
25
2.1
25
81
0
59
53
9
7
28
1.61
66733970--66734107
68
2.0
68
100
0
276
33
15
11
39
1.84
66738510--66738543
16
2.1
16
94
0
59
35
11
29
23
1.90
66739879--66739940
30
2.1
30
96
0
115
29
8
25
37
1.85
66741776--66741813
19
2.0
19
100
0
76
26
10
31
31
1.90
66748113--66748288
46
3.8
46
79
12
189
21
19
29
28
1.98
66748112--66748280
93
1.8
93
90
0
275
21
20
29
28
1.98
66760350--66760481
40
3.2
43
63
12
103
46
11
10
31
1.74
66760341--66760665
82
4.0
82
82
1
346
46
12
11
29
1.77
66760341--66760639
164
1.8
164
83
0
400
46
12
11
29
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66762346--66762449
43
2.4
43
88
3
138
37
25
14
23
1.92
66774777--66774868
41
2.3
41
86
5
125
17
29
17
35
1.93
66774805--66774890
40
2.1
41
84
2
111
20
25
18
34
1.96
66782344--66782375
3
10.7
3
100
0
64
65
0
34
0
0.93
66783388--66783429
20
2.0
20
82
13
50
47
2
9
40
1.49
66783970--66783994
7
3.6
7
100
0
50
24
0
12
64
1.27
66788101--66788133
15
2.2
15
100
0
66
42
6
15
36
1.71
66800167--66800198
5
6.6
5
92
7
57
18
0
0
81
0.70
66800167--66800197
9
3.3
9
91
8
53
19
0
0
80
0.71
66805112--66805157
24
1.9
24
95
0
83
71
2
0
26
0.97
66805154--66805273
30
4.1
29
79
6
127
30
23
4
42
1.73
66818627--66818656
14
2.1
14
93
0
51
23
6
3
66
1.30
66818580--66819137
172
3.3
173
82
8
599
28
15
19
36
1.93
66818571--66819137
87
6.7
87
81
7
601
29
15
19
35
1.93
66818885--66818919
14
2.5
14
90
0
52
17
11
8
62
1.52
66818571--66819064
259
1.9
255
85
4
679
28
15
19
36
1.92
66818899--66819182
79
3.7
75
78
8
288
30
15
19
34
1.92
66818918--66819218
78
3.9
78
79
8
217
30
16
19
33
1.94
66819370--66819416
24
1.9
25
91
4
78
72
2
0
25
0.96
66819413--66819532
30
4.1
29
76
7
118
33
21
2
42
1.66
66819754--66819792
15
2.5
16
87
4
62
64
10
5
20
1.44
66821855--66822015
87
1.9
87
89
2
252
36
19
14
29
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66824780--66824812
18
1.9
17
88
11
50
27
15
12
45
1.81
66826121--66826206
29
3.0
29
88
6
115
26
33
15
24
1.95
66829585--66829614
15
1.9
16
93
6
53
16
0
0
83
0.65
66835377--66835435
29
2.0
29
96
0
109
44
22
6
27
1.78
66836230--66836477
119
2.1
118
95
0
442
40
11
9
38
1.74
66839747--66839850
33
3.2
33
77
4
115
55
9
0
34
1.32
66840898--66840928
5
6.2
5
100
0
62
38
0
0
61
0.96
66847759--66847783
13
1.9
13
100
0
50
56
0
16
28
1.41
66848724--66848828
54
1.9
54
92
0
174
30
13
10
45
1.77
66848657--66848962
135
2.3
135
82
3
384
33
15
8
42
1.78
66848859--66848962
54
1.9
54
88
0
154
33
17
6
42
1.75
66849370--66849431
29
2.1
30
87
3
90
40
12
24
22
1.89
66849327--66849472
69
2.1
71
83
5
181
36
19
23
19
1.95
66849397--66849607
41
5.1
41
90
1
323
34
22
23
19
1.97
66849327--66849472
70
2.1
68
81
8
168
36
19
23
19
1.95
66849398--66849607
83
2.6
83
89
1
325
34
22
23
19
1.97
66849765--66849869
14
7.2
14
67
8
57
28
0
25
45
1.54
66849778--66849857
21
3.6
21
73
12
79
28
0
26
45
1.54
66849950--66849997
14
3.4
14
79
2
51
20
2
41
35
1.64
66849952--66849995
21
2.1
21
83
8
54
20
2
43
34
1.64
66850898--66851058
83
1.9
85
85
8
222
40
11
17
29
1.85
66851497--66851524
6
4.7
6
100
0
56
17
67
0
14
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66855706--66855746
19
2.2
19
86
4
57
21
2
4
70
1.18
66855996--66856145
43
3.5
43
89
0
210
21
20
30
28
1.98
66856856--66858679
911
2.0
911
99
0
3630
38
20
14
26
1.91
66859061--66859117
21
2.7
21
70
5
53
24
31
26
17
1.97
66862468--66862524
28
2.0
28
93
0
96
35
29
22
12
1.91
66867405--66867455
24
2.3
21
77
12
57
41
13
7
37
1.74
66869104--66869319
43
5.0
43
81
5
267
23
18
29
28
1.98
66869104--66869319
85
2.5
86
85
2
283
23
18
29
28
1.98
66870580--66870687
26
4.2
26
91
0
180
33
6
24
36
1.81
66872285--66872397
27
4.2
27
82
3
120
17
23
22
36
1.95
66872285--66872397
54
2.1
54
86
3
156
17
23
22
36
1.95
66874935--66875109
86
2.0
87
83
1
217
34
16
14
35
1.88
66878951--66879060
26
4.2
26
94
0
166
36
22
5
35
1.78
66884767--66884850
26
3.2
26
96
0
150
35
23
5
34
1.80
66887734--66887827
43
2.2
43
83
16
124
28
26
14
29
1.95
66887909--66888004
43
2.2
45
80
12
110
29
25
15
30
1.96
66887660--66888413
176
4.3
177
89
2
1117
25
24
17
31
1.97
66888217--66888357
45
3.2
45
82
6
137
25
25
16
32
1.96
66887653--66888413
353
2.2
351
89
2
1170
25
24
17
31
1.97
66889503--66889543
22
2.0
21
90
9
66
7
21
0
70
1.11
66909763--66909806
20
2.1
21
83
4
54
63
0
2
34
1.07
66909765--66909808
23
1.9
23
86
9
63
63
0
2
34
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66911017--66911090
37
1.9
39
81
10
91
50
2
10
36
1.52
66911543--66911607
30
2.2
30
91
0
103
24
4
13
56
1.56
66913391--66913419
2
14.5
2
100
0
58
51
0
0
48
1.00
66915254--66915285
14
2.1
16
88
11
50
15
3
12
68
1.32
66916383--66916427
22
2.0
22
83
12
56
35
6
20
37
1.79
66929834--66929889
6
8.5
6
75
24
51
80
3
1
14
0.93
66929834--66929889
16
3.2
16
77
20
51
80
3
1
14
0.93
66929834--66929889
19
2.8
19
76
17
60
80
3
1
14
0.93
66930141--66930230
45
2.0
45
84
0
117
16
23
35
24
1.95
66931059--66931100
20
2.1
20
90
0
66
33
11
4
50
1.60
66932597--66932631
5
7.0
5
87
12
54
80
0
2
17
0.84
66955648--66955697
6
8.7
6
80
6
50
20
2
0
78
0.86
66955907--66955947
16
2.5
16
96
4
73
19
12
7
60
1.54
66957541--66957628
30
2.9
30
86
0
86
21
35
30
12
1.91
66957559--66957622
30
2.1
29
97
0
101
17
39
34
9
1.82
66960763--66960871
29
3.8
29
75
8
96
26
27
15
30
1.96
66967310--66967346
19
1.9
19
94
0
65
35
18
16
29
1.93
66974435--66974459
13
1.9
13
100
0
50
36
0
8
56
1.29
66975916--66976004
41
2.2
41
91
4
144
34
21
30
13
1.92
66976415--66976538
43
2.9
43
86
0
167
16
32
29
21
1.95
66977269--66977315
20
2.3
20
88
0
76
63
6
0
29
1.19
66980401--66980435
18
1.9
18
88
0
52
68
0
0
31
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66982071--66982113
11
3.8
11
79
14
52
2
16
2
79
0.95
66982069--66982107
18
2.1
19
86
13
55
2
15
2
79
0.95
66982079--66982122
22
2.0
23
90
4
72
4
20
0
75
0.98
66982080--66982129
22
2.3
22
86
6
66
4
22
0
74
0.99
66982721--66982750
10
3.0
10
95
0
51
50
16
10
23
1.75
66989116--66989223
26
4.2
26
93
0
189
32
7
24
36
1.83
66996821--66997062
10
25.4
9
67
20
68
62
5
1
30
1.25
66996821--66996909
18
5.0
18
70
17
53
66
1
2
30
1.11
66996822--66996919
28
3.5
28
79
9
103
66
2
2
29
1.14
66997572--66997656
8
10.0
8
71
20
57
30
1
2
65
1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325