genome.fa.s3.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  100  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32203085--32203125	3	13.7	3	94	0	73	31	0	36	31	1.58
32206250--32206361	37	3.1	37	76	14	99	41	2	4	51	1.36
32206336--32206451	59	1.9	58	86	6	160	40	2	4	52	1.35
32211849--32211887	16	2.5	16	91	4	62	12	10	7	69	1.37
32220453--32220498	17	2.8	17	77	9	51	63	0	4	32	1.14
32220571--32220870	3	98.3	3	66	19	117	58	4	5	32	1.40
32220631--32220667	19	1.9	19	94	0	65	62	5	5	27	1.39
32220895--32220927	16	2.1	16	88	5	50	66	0	0	33	0.92
32222812--32223338	72	7.1	72	82	6	527	33	18	15	31	1.93
32222826--32223338	151	3.5	144	83	8	570	33	18	16	31	1.93
32222579--32223318	223	3.3	220	83	8	839	33	19	16	30	1.94
32235351--32235387	16	2.4	15	86	8	56	62	0	0	37	0.96
32235700--32235733	9	3.8	9	92	0	50	64	5	2	26	1.30
32235894--32236184	3	95.3	3	66	20	117	59	3	5	31	1.37
32236129--32236182	20	2.6	21	80	16	60	61	5	3	29	1.36
32236209--32236241	16	2.1	16	88	5	50	66	0	0	33	0.92
32243129--32243200	36	2.0	37	88	2	110	13	12	36	37	1.83
32243132--32243219	37	2.4	37	78	3	88	15	12	35	36	1.86
32257213--32257286	24	3.4	24	75	17	81	35	2	0	62	1.10
32257216--32257294	17	5.3	15	72	22	60	35	2	0	62	1.09
32257213--32257286	21	3.4	22	75	17	75	35	2	0	62	1.10
32263964--32264152	96	2.0	96	89	2	290	35	16	33	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32266775--32266949	96	1.8	96	87	2	262	40	17	32	10	1.83
32268648--32268822	96	1.8	96	91	0	287	40	17	32	10	1.84
32276078--32276108	15	2.1	15	93	0	53	12	16	51	19	1.76
32276093--32276167	27	2.8	27	91	0	114	28	18	37	16	1.92
32276376--32276507	61	2.2	61	98	0	255	17	0	20	62	1.33
32279377--32279526	64	2.4	64	94	1	266	39	4	10	45	1.60
32279911--32279990	33	2.4	33	87	0	106	33	17	31	17	1.93
32280001--32280109	33	3.3	32	76	5	85	22	11	41	25	1.86
32280031--32280122	32	2.8	32	86	1	112	21	13	40	25	1.89
32281673--32281765	33	2.8	33	83	1	125	21	45	13	19	1.85
32282196--32282352	64	2.5	64	87	3	210	46	9	4	39	1.57
32282766--32282858	46	2.0	46	97	0	177	29	21	26	22	1.99
32283766--32283811	22	2.1	22	95	0	83	8	15	36	39	1.78
32284926--32284952	12	2.2	12	100	0	54	22	48	7	22	1.75
32285210--32285261	27	1.9	27	88	0	77	42	9	0	48	1.36
32285846--32286461	2	323.0	2	69	10	315	40	1	56	0	1.15
32291908--32291970	16	3.6	17	76	22	51	15	6	4	73	1.21
32292310--32292350	13	3.1	14	82	10	50	73	4	0	21	1.02
32295953--32296013	11	5.5	11	72	2	50	72	3	21	3	1.14
32299064--32299094	5	6.2	5	100	0	62	19	19	19	41	1.90
32299627--32299673	19	2.5	19	82	6	60	36	4	10	48	1.57
32303054--32303891	75	11.5	73	82	8	871	31	21	16	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32303059--32303891	147	5.7	147	85	6	906	31	21	16	31	1.95
32303054--32303762	222	3.2	221	90	2	1046	31	19	16	32	1.94
32303710--32303891	68	2.9	62	81	6	213	26	28	18	27	1.98
32303636--32303891	129	1.9	128	85	9	345	26	26	17	28	1.98
32303860--32303965	54	1.9	54	85	9	144	37	19	15	27	1.92
32303828--32304301	139	3.4	140	96	0	862	36	21	17	24	1.94
32304234--32304399	72	2.3	71	87	6	237	42	21	14	22	1.88
32304274--32304520	122	2.0	124	89	3	383	39	22	13	24	1.90
32304399--32304573	71	2.5	70	85	3	219	34	23	13	28	1.93
32314621--32314699	29	2.7	29	84	11	108	27	30	15	26	1.96
32329866--32329974	26	4.2	26	93	0	191	33	7	23	35	1.83
32335284--32335355	26	2.7	28	85	12	98	15	8	4	72	1.24
32338038--32338081	20	2.2	20	83	0	52	38	20	18	22	1.93
32344685--32344713	13	2.1	14	93	6	51	65	0	0	34	0.93
32344702--32344744	18	2.3	19	80	15	54	58	2	2	37	1.24
32345046--32345141	9	10.4	9	72	20	74	32	2	1	64	1.12
32348246--32348308	26	2.4	27	81	7	85	19	20	20	39	1.92
32352762--32352931	92	1.8	92	96	0	313	28	28	21	21	1.99
32352754--32352928	46	3.8	46	81	11	223	29	28	21	21	1.98
32352759--32352947	46	4.1	46	73	17	151	28	28	21	21	1.99
32362581--32362751	93	1.8	93	93	0	297	29	28	21	21	1.98
32362574--32362748	46	3.8	46	78	13	205	30	27	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32378250--32378301	26	2.0	26	96	0	95	50	17	7	25	1.72
32379178--32379382	31	6.6	31	90	0	320	28	18	26	26	1.98
32379364--32379429	29	2.3	29	89	0	96	33	10	28	27	1.90
32379423--32379577	32	4.8	32	87	3	168	32	10	21	34	1.88
32379433--32379630	97	2.0	95	79	5	209	35	12	20	30	1.90
32384322--32384375	10	5.7	9	80	10	63	62	3	0	33	1.12
32384322--32384372	19	2.6	20	84	9	70	66	3	0	29	1.09
32384768--32384796	13	2.1	14	93	6	51	58	0	6	34	1.25
32386752--32386821	35	2.0	35	88	0	104	31	10	24	34	1.88
32389739--32389907	46	3.6	45	75	13	139	23	27	19	30	1.98
32395003--32395062	28	2.2	26	77	11	66	26	26	11	35	1.91
32395017--32395088	28	2.6	28	88	0	99	29	27	12	30	1.93
32397096--32397209	57	2.0	57	94	0	201	30	32	9	27	1.89
32397913--32398245	48	6.9	48	76	5	278	25	30	18	26	1.98
32397911--32398232	96	3.4	95	81	4	337	24	29	18	27	1.98
32397912--32398245	144	2.3	144	88	2	474	25	29	18	26	1.98
32403607--32412938	481	19.6	482	90	2	14575	35	15	13	35	1.87
32403607--32412938	964	9.8	962	90	2	14742	35	15	13	35	1.87
32414790--32415479	23	30.1	23	78	7	625	38	23	5	32	1.78
32417509--32417555	15	3.2	15	84	3	51	51	2	2	44	1.25
32418250--32418288	14	2.8	14	84	0	51	41	0	30	28	1.57
32419639--32419683	14	3.2	14	80	0	63	48	24	0	26	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32419875--32419909	15	2.4	15	90	4	54	45	34	0	20	1.51
32419877--32419948	22	3.3	21	74	14	65	47	29	1	22	1.60
32420068--32420214	40	3.7	40	79	12	149	29	19	23	27	1.98
32420321--32420398	39	2.0	39	84	2	102	29	19	16	34	1.94
32420900--32421275	131	2.8	132	82	5	415	25	21	18	34	1.96
32420918--32421345	133	3.2	132	80	7	356	26	20	18	34	1.96
32421854--32426456	481	9.6	481	93	1	7715	36	15	13	34	1.87
32434478--32434540	29	2.2	29	97	2	119	41	19	12	26	1.87
32435081--32435130	26	1.9	26	95	0	91	36	8	22	34	1.83
32438826--32439031	28	7.3	29	72	10	142	34	20	16	28	1.95
32444201--32444254	20	2.7	20	97	0	99	24	29	35	11	1.90
32446827--32446903	21	3.5	21	68	16	66	37	28	12	20	1.90
32446809--32446899	45	2.0	45	93	0	155	38	26	12	23	1.89
32449413--32449470	24	2.4	24	94	0	98	31	24	15	29	1.95
32452983--32453015	17	1.9	17	93	0	57	24	0	3	72	0.98
32454091--32454153	30	2.1	30	82	11	76	26	1	6	65	1.26
32459522--32459631	18	6.5	15	82	17	87	37	10	14	37	1.81
32459520--32459645	35	3.5	36	87	11	195	37	11	14	37	1.81
32459520--32459645	54	2.3	54	98	0	243	37	11	14	37	1.81
32459520--32459645	19	6.9	19	88	10	201	37	11	14	37	1.81
32459520--32459668	19	7.8	22	86	11	94	36	10	14	38	1.80
32465586--32465638	24	2.2	24	83	12	65	30	35	16	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32474204--32474498	78	3.8	78	90	2	441	32	18	23	25	1.97
32474438--32474712	45	6.1	45	80	7	297	31	15	26	26	1.96
32474438--32474712	90	3.0	90	82	5	331	31	15	26	26	1.96
32475065--32475136	19	3.8	19	88	3	119	37	11	15	36	1.83
32475065--32475147	19	4.2	22	86	7	78	39	9	15	34	1.80
32477024--32477158	40	3.4	39	79	6	137	26	17	22	33	1.96
32477143--32477198	28	2.0	28	92	0	94	26	14	28	30	1.95
32477396--32477430	17	2.1	17	100	0	70	28	17	11	42	1.83
32477426--32477482	17	3.5	17	68	18	57	35	19	14	31	1.91
32477414--32477480	32	2.1	32	97	0	125	35	17	13	32	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325