Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  97  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31232819--31232900
24
3.5
23
72
8
67
29
25
19
25
1.99
31234293--31234446
42
3.6
42
78
1
173
30
24
14
30
1.95
31235606--31235715
42
2.6
42
88
0
148
38
20
13
27
1.91
31237931--31237967
19
1.9
19
94
0
65
29
10
13
45
1.77
31244720--31244897
27
6.6
27
81
3
187
26
14
29
30
1.95
31244720--31244897
54
3.3
54
84
3
223
26
14
29
30
1.95
31247366--31247415
21
2.4
21
76
3
57
34
2
16
48
1.57
31247998--31248060
23
2.8
24
78
9
78
25
19
19
36
1.94
31248053--31248107
22
2.4
23
79
8
60
32
21
18
27
1.96
31254570--31254662
23
4.1
23
69
6
73
23
19
21
35
1.96
31259692--31259739
24
2.0
24
100
0
96
37
16
20
25
1.93
31259774--31259921
51
2.9
51
91
2
235
31
13
26
28
1.94
31266344--31266437
43
2.2
43
94
0
161
34
34
22
9
1.87
31284308--31284483
46
3.8
46
77
4
174
28
28
21
22
1.99
31284359--31284502
46
3.1
45
70
15
114
28
29
20
20
1.98
31286528--31286607
15
5.4
15
72
12
67
58
13
16
11
1.62
31286539--31286616
15
5.2
15
71
11
70
56
15
15
12
1.68
31293211--31293434
40
5.6
40
90
1
344
23
22
25
28
1.99
31301362--31301545
40
4.6
40
88
2
255
24
22
25
27
2.00
31305607--31305830
79
2.8
78
82
6
263
25
27
21
25
2.00
31305607--31305830
40
5.7
40
86
6
271
25
27
21
25
2.00
31308043--31308150
41
2.6
42
83
5
130
25
28
16
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31308125--31308257
45
3.0
45
93
0
221
27
28
21
21
1.99
31316942--31317030
35
2.5
35
85
0
115
39
16
22
21
1.92
31318544--31318603
27
2.3
26
83
13
70
30
11
20
38
1.88
31325764--31325802
17
2.3
17
95
0
69
20
7
12
58
1.58
31331065--31331104
16
2.5
16
100
0
80
62
0
0
37
0.95
31332225--31332256
10
2.8
12
81
18
50
43
6
0
50
1.27
31336348--31336715
140
2.6
139
85
2
461
32
22
19
25
1.97
31339052--31339184
46
2.9
46
86
5
171
33
26
20
20
1.97
31339052--31339225
47
3.7
47
81
6
185
33
27
18
21
1.96
31355213--31355251
19
2.1
19
100
0
78
51
20
10
17
1.74
31357384--31357447
28
2.4
27
82
12
71
3
21
4
70
1.20
31359257--31359288
10
3.3
10
95
4
57
71
6
0
21
1.07
31360318--31360360
20
2.1
21
86
4
61
67
4
0
27
1.10
31360329--31360374
22
2.2
20
84
7
56
63
2
0
34
1.07
31363526--31364090
77
7.1
77
79
9
451
46
11
11
30
1.76
31363558--31364056
161
3.2
158
83
7
610
46
11
12
29
1.77
31363563--31364090
238
2.2
231
79
11
552
46
11
11
30
1.77
31364991--31365098
26
4.2
26
93
0
189
32
7
24
36
1.83
31367920--31367975
27
2.1
27
96
0
103
23
16
7
53
1.67
31372106--31372212
26
4.2
26
91
2
180
32
6
24
36
1.81
31372106--31372212
51
2.1
52
94
1
189
32
6
24
36
1.81
31376427--31376481
20
2.7
21
86
11
78
40
3
3
52
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31376819--31376962
70
2.1
70
97
0
270
38
8
18
34
1.81
31377906--31378002
43
2.3
43
88
0
140
30
28
15
24
1.96
31378626--31378672
24
2.0
24
91
0
76
8
29
8
53
1.61
31381907--31381947
19
2.1
19
86
4
55
48
34
0
17
1.47
31382136--31382167
14
2.3
14
94
0
55
56
28
0
15
1.40
31382889--31383030
41
3.5
41
93
0
230
30
29
14
25
1.94
31383003--31383135
41
3.3
41
86
1
160
20
19
24
36
1.95
31385860--31385899
13
3.1
13
81
0
53
45
7
10
37
1.66
31389121--31389284
42
3.9
42
77
7
143
31
25
17
26
1.97
31391779--31391869
34
2.7
33
80
8
94
35
7
7
49
1.60
31392601--31392643
17
2.6
16
78
7
50
23
0
9
67
1.19
31394395--31394526
63
2.1
63
84
0
165
25
26
20
28
1.99
31395118--31395150
10
3.3
10
100
0
66
27
0
45
27
1.54
31397920--31397994
21
3.8
19
76
13
71
76
2
17
4
1.06
31401349--31401386
18
2.2
18
86
13
53
21
2
15
60
1.47
31403169--31403206
16
2.4
16
91
4
60
57
0
10
31
1.32
31410666--31410847
40
4.6
40
81
7
194
26
27
20
25
1.99
31410669--31410847
79
2.2
80
80
6
186
26
27
20
25
1.99
31417223--31417421
68
3.0
66
80
11
192
25
26
15
32
1.96
31420050--31420313
40
6.6
40
75
6
194
24
25
27
22
2.00
31420213--31420349
39
3.5
39
72
8
136
26
27
26
20
1.99
31420170--31420349
79
2.3
79
96
0
326
26
26
25
21
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31420050--31420313
119
2.2
121
84
2
327
24
25
27
22
2.00
31427132--31427166
17
2.1
17
94
0
61
54
0
8
37
1.31
31429677--31430167
27
18.2
27
82
2
538
27
20
9
42
1.83
31430172--31430364
27
7.1
27
84
0
242
36
18
18
25
1.94
31430172--31430364
54
3.6
54
87
2
271
36
18
18
25
1.94
31430566--31430648
27
3.1
26
84
5
85
20
21
21
36
1.96
31430736--31430794
22
2.7
22
83
0
73
20
23
22
33
1.97
31430959--31431032
27
2.8
27
85
6
89
17
24
21
36
1.95
31431150--31431342
6
31.8
6
73
15
157
21
17
13
47
1.82
31431150--31431342
61
3.2
61
94
2
318
21
17
13
47
1.82
31431150--31431342
30
6.4
30
88
4
289
21
17
13
47
1.82
31443774--31443798
10
2.5
10
100
0
50
92
0
0
8
0.40
31451611--31451862
127
2.0
127
98
0
486
23
17
26
32
1.97
31462634--31462667
17
2.0
17
100
0
68
58
5
0
35
1.22
31462633--31462681
21
2.5
19
83
9
62
61
4
0
34
1.15
31467334--31467399
19
3.2
21
87
6
64
36
19
9
34
1.84
31467351--31467448
19
5.2
19
91
7
155
34
17
10
37
1.83
31467373--31467429
17
3.5
15
88
11
53
35
15
10
38
1.82
31467351--31467448
36
2.6
37
88
9
144
34
17
10
37
1.83
31467699--31468126
84
5.1
84
92
1
707
26
22
21
29
1.99
31469084--31469137
20
2.8
19
91
5
83
0
16
0
83
0.65
31469077--31469134
26
2.2
26
90
6
91
0
17
0
82
0.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31469074--31469125
6
8.7
6
86
14
72
0
15
0
84
0.62
31474767--31474853
19
4.7
19
94
5
160
36
14
11
36
1.83
31474758--31474853
36
2.5
37
90
10
149
35
16
10
37
1.83
31476962--31476995
15
2.3
15
90
5
52
67
5
0
26
1.13
31492945--31492979
17
2.1
17
88
0
52
14
14
22
48
1.79
31499134--31499163
15
2.0
15
93
0
51
40
23
13
23
1.90
31501352--31501597
55
4.7
52
79
11
193
36
16
24
22
1.94
31501351--31501551
108
1.8
109
86
6
291
34
16
24
23
1.95
31508831--31509064
55
4.4
53
77
10
221
35
17
24
21
1.95
31508838--31509038
55
3.7
53
80
5
224
34
17
24
22
1.96
31508838--31509038
108
1.8
110
88
4
309
34
17
24
22
1.96
31515162--31515229
29
2.3
29
85
5
93
27
30
13
27
1.94
31515334--31515412
29
2.7
30
82
13
110
29
30
15
25
1.96
31523491--31523558
29
2.3
29
85
5
93
27
30
13
27
1.94
31523663--31523741
29
2.7
30
82
13
110
29
30
15
25
1.96
31535771--31535878
55
2.0
53
92
3
180
25
10
12
51
1.71
31540394--31540577
54
3.4
54
82
5
228
35
16
24
22
1.95
31542100--31542324
40
5.6
40
87
0
315
33
28
20
18
1.96
31550311--31550535
40
5.6
40
88
0
324
33
27
20
18
1.96
31559681--31559723
17
2.4
18
84
11
61
18
41
25
13
1.88
31576076--31576232
68
2.3
68
81
3
174
26
15
17
41
1.88
31578943--31579060
42
2.8
43
89
2
184
11
22
33
32
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31579227--31579395
58
2.9
58
88
0
259
23
18
27
30
1.98
31581645--31581790
68
2.1
68
83
2
177
26
15
17
41
1.89
31584824--31584875
26
2.0
26
100
0
104
46
23
7
23
1.78
31585345--31585438
35
2.7
35
86
0
134
34
20
18
27
1.95
31585364--31585419
17
3.2
17
75
5
58
33
19
17
28
1.95
31585377--31585441
18
3.7
18
70
4
51
38
20
15
26
1.92
31585307--31585425
18
6.9
17
74
4
78
35
19
17
27
1.94
31591188--31591410
40
5.7
40
86
7
271
26
26
21
26
1.99
31594651--31594726
37
2.1
37
84
0
98
25
32
21
21
1.97
31594848--31595046
47
4.2
47
93
0
326
28
31
9
31
1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325