genome.fa.s3.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  134  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43013974--43014011	20	2.0	20	89	5	60	71	0	0	28	0.87
43014673--43014721	17	2.9	16	76	8	53	38	0	4	57	1.18
43018702--43018861	26	6.2	26	91	0	266	32	7	23	36	1.83
43018702--43018861	52	3.1	52	96	0	293	32	7	23	36	1.83
43020287--43020339	28	1.9	28	85	11	74	52	9	9	28	1.64
43022916--43022967	26	2.0	27	84	3	70	63	11	9	15	1.52
43032323--43032459	42	3.3	42	87	3	197	32	15	21	30	1.94
43032323--43032486	83	2.0	85	89	4	253	30	15	23	30	1.95
43032321--43032504	84	2.2	83	84	6	246	30	16	22	29	1.96
43042287--43042386	29	3.5	29	90	1	148	30	28	15	27	1.96
43050155--43050255	29	3.5	29	90	1	150	29	28	14	26	1.95
43055353--43055417	6	11.0	6	95	3	114	81	0	0	18	0.69
43064726--43064795	29	2.4	29	95	0	131	27	10	25	37	1.88
43065280--43065389	52	2.1	52	89	0	166	20	31	22	24	1.98
43070382--43070410	12	2.3	13	94	5	51	75	0	0	24	0.80
43075097--43075153	30	1.9	30	85	7	80	14	28	33	24	1.94
43080245--43080276	15	2.0	17	88	11	50	15	12	15	56	1.68
43082656--43082838	79	2.3	81	83	7	223	24	22	27	24	2.00
43082657--43082840	40	4.6	40	82	9	207	24	22	28	24	2.00
43082709--43082863	79	2.0	79	83	7	199	25	21	27	25	1.99
43090731--43090955	40	5.7	40	83	5	260	25	21	27	25	1.99
43090823--43090978	80	2.0	79	82	6	190	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43098626--43098678	23	2.4	22	84	6	63	71	1	18	7	1.19
43099918--43100100	40	4.7	40	82	9	216	24	22	27	25	2.00
43099969--43100133	79	2.1	79	84	6	210	25	21	27	25	1.99
43107923--43108087	46	3.6	45	81	11	181	26	18	30	24	1.98
43107876--43108087	47	4.5	47	78	13	163	26	17	30	25	1.97
43109265--43109305	22	1.9	21	85	5	55	14	41	24	19	1.89
43112081--43112271	49	3.9	48	78	5	202	30	25	17	26	1.97
43112094--43112277	101	1.8	99	87	4	271	30	26	16	26	1.97
43117788--43117938	51	3.0	50	82	3	196	29	26	19	24	1.99
43129417--43129736	39	8.2	39	92	0	514	23	28	22	25	1.99
43132541--43132577	18	2.1	18	100	0	74	51	16	10	21	1.74
43140487--43140532	20	2.3	20	84	0	56	36	15	23	23	1.93
43143098--43143136	21	1.9	20	84	5	51	48	10	12	28	1.74
43151647--43151784	37	3.8	37	85	9	169	24	31	18	26	1.97
43151647--43151783	74	1.9	74	86	10	201	24	30	18	26	1.98
43152158--43152192	8	4.4	8	100	0	70	22	37	0	40	1.55
43160006--43160119	39	2.9	39	85	5	133	28	27	17	26	1.98
43164689--43164780	48	1.9	48	86	4	132	29	27	13	30	1.94
43164776--43164914	37	3.8	37	83	10	162	25	31	17	25	1.97
43164776--43164921	74	2.0	73	85	9	199	25	32	16	26	1.96
43165287--43165313	8	3.4	8	100	0	54	22	37	0	40	1.54
43165964--43165989	13	2.0	13	100	0	52	30	38	23	7	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43190172--43190434	120	2.2	119	82	4	316	26	28	20	24	1.99
43190172--43190381	40	5.3	40	92	0	314	26	29	20	23	1.99
43190175--43190434	80	3.3	80	86	3	267	25	28	21	24	1.99
43190366--43190443	40	1.9	41	82	10	97	26	28	21	23	1.99
43202431--43202462	15	2.1	15	94	0	55	56	3	25	15	1.54
43204833--43205323	47	10.4	47	94	0	793	29	29	8	32	1.87
43210856--43211175	46	7.0	46	93	0	478	22	23	15	39	1.91
43213259--43213306	11	4.2	11	79	10	51	62	2	0	35	1.07
43214207--43214330	55	2.3	56	90	4	191	29	30	18	20	1.97
43215146--43215361	48	4.6	46	77	12	183	23	30	18	27	1.98
43216741--43216822	43	2.0	40	85	7	110	24	23	2	50	1.62
43233499--43233623	55	2.3	55	95	0	223	23	3	30	43	1.69
43242377--43242461	44	1.9	44	81	9	102	31	28	17	22	1.97
43244161--43244267	54	2.0	54	98	0	205	32	23	14	28	1.95
43245553--43245586	17	2.0	17	100	0	68	29	5	29	35	1.81
43248134--43248221	44	2.0	44	84	8	117	29	27	20	22	1.99
43260661--43260801	43	3.3	43	91	0	237	10	23	32	33	1.89
43263843--43263868	13	2.0	13	100	0	52	61	30	0	7	1.24
43265029--43265079	25	2.0	25	100	0	102	25	19	11	43	1.85
43268666--43268723	29	2.0	29	96	0	107	37	22	10	29	1.87
43276485--43276651	49	3.5	47	73	15	130	25	26	17	29	1.98
43276625--43276753	46	2.9	45	82	12	142	24	28	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43280673--43280725	26	2.0	26	82	7	63	22	15	22	39	1.91
43281982--43282080	24	4.1	24	92	1	144	21	37	4	37	1.72
43288589--43288694	24	4.4	24	89	1	149	18	37	5	37	1.75
43292031--43292409	47	8.1	47	95	0	661	31	9	30	28	1.88
43292528--43292606	37	2.1	37	88	4	115	25	18	30	25	1.98
43294454--43294556	43	2.4	43	100	0	206	22	15	35	26	1.94
43294538--43294611	29	2.6	29	89	4	105	25	16	32	25	1.96
43294922--43295116	40	4.9	40	81	3	173	26	22	27	24	2.00
43294960--43295116	80	2.0	80	83	3	201	27	21	26	24	1.99
43298518--43298895	47	8.1	47	95	1	661	31	9	30	28	1.88
43298518--43298895	140	2.7	141	94	1	661	31	9	30	28	1.88
43298518--43298895	187	2.0	187	94	1	659	31	9	30	28	1.88
43299014--43299092	37	2.1	37	88	4	115	25	18	30	25	1.98
43306444--43306528	32	2.6	34	80	14	97	67	1	11	20	1.29
43315619--43315756	40	3.5	39	78	8	127	28	26	18	26	1.98
43315647--43315798	79	1.9	80	80	6	175	26	26	20	26	1.99
43322409--43322498	29	3.1	29	84	4	112	31	25	14	28	1.95
43322715--43322753	16	2.4	16	91	0	60	10	17	20	51	1.74
43323489--43323514	4	6.5	4	100	0	52	76	0	0	23	0.78
43326343--43326369	13	2.1	13	100	0	54	14	37	33	14	1.88
43328028--43328233	40	5.2	40	93	1	333	22	24	26	26	2.00
43333547--43333677	46	2.8	46	79	4	140	24	28	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43348943--43348977	15	2.2	16	90	5	54	42	14	5	37	1.69
43353763--43353789	7	3.9	7	100	0	54	25	14	0	59	1.36
43354131--43354165	18	1.9	18	100	0	70	45	0	22	31	1.53
43356619--43357228	27	22.6	27	84	1	756	39	20	8	30	1.82
43356619--43357336	54	13.3	54	85	0	882	39	20	8	31	1.82
43356613--43357201	108	5.5	108	93	0	982	39	21	7	31	1.82
43356619--43357339	27	26.7	27	80	4	645	39	20	8	31	1.82
43357324--43357563	27	9.0	27	86	3	272	37	19	19	24	1.94
43357324--43357549	80	2.8	81	85	2	269	37	20	18	23	1.94
43357321--43357563	107	2.3	106	85	4	321	37	18	19	24	1.94
43357324--43357566	53	4.6	53	81	3	249	37	19	19	24	1.94
43357356--43357563	80	2.6	80	87	4	271	37	18	19	24	1.94
43358095--43358169	6	12.3	6	75	13	73	21	16	13	49	1.79
43358117--43358184	24	2.8	24	81	0	82	22	16	11	50	1.77
43362368--43362404	17	2.2	17	100	0	74	21	5	13	59	1.54
43364858--43365171	40	7.7	40	83	8	384	23	21	28	26	1.99
43364858--43365171	83	3.9	83	88	3	437	23	21	28	26	1.99
43364862--43365171	123	2.5	121	84	6	378	23	21	28	26	1.99
43373353--43373666	40	7.7	40	85	8	411	22	22	28	26	1.99
43373357--43373666	123	2.5	121	86	6	405	22	22	28	25	1.99
43373353--43373666	83	3.9	81	89	5	456	22	22	28	26	1.99
43379122--43379179	25	2.3	25	96	3	107	37	13	12	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43383747--43383809	22	2.8	22	83	9	65	23	26	11	38	1.89
43383741--43383848	23	4.7	23	73	13	89	19	26	17	36	1.94
43384029--43384085	16	3.4	16	75	4	51	36	12	12	38	1.80
43391451--43391586	23	6.0	22	71	17	84	19	25	18	36	1.95
43397455--43397538	27	3.2	26	89	5	123	19	25	21	34	1.96
43400144--43400171	12	2.3	12	100	0	56	7	14	25	53	1.66
43408226--43408262	15	2.4	16	86	13	51	35	13	2	48	1.57
43410164--43410224	30	2.0	30	87	0	86	29	24	8	37	1.84
43414585--43414645	30	2.0	30	83	0	77	31	22	8	37	1.84
43437157--43437194	20	1.9	20	88	0	58	39	28	10	21	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325