genome.fa.s3.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  205  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66401548--66401771	6	36.3	6	69	18	113	20	17	13	48	1.80
66401548--66401771	25	9.1	24	70	16	122	20	17	13	48	1.80
66401548--66401750	62	3.3	62	91	0	325	20	18	13	48	1.81
66409518--66409643	42	3.0	41	74	11	119	35	26	15	23	1.94
66409520--66409640	44	2.8	45	80	5	133	35	26	15	22	1.94
66413258--66413332	39	1.9	39	94	0	132	29	32	9	29	1.88
66417430--66417567	29	4.8	29	91	0	206	24	15	32	26	1.96
66418246--66418271	11	2.4	11	100	0	52	26	0	19	53	1.45
66422044--66422106	29	2.1	30	88	2	92	23	36	19	20	1.95
66423356--66423443	43	2.0	43	97	0	167	25	14	13	46	1.81
66423988--66424047	23	2.5	24	76	13	61	61	1	1	35	1.16
66427117--66427432	163	1.9	163	89	1	490	32	17	21	28	1.96
66428800--66428839	18	2.2	19	90	4	64	17	2	0	80	0.83
66431378--66431569	105	1.8	104	80	8	228	30	15	25	28	1.96
66439062--66439179	23	5.0	23	77	13	107	22	23	18	34	1.96
66439090--66439179	47	1.9	46	86	6	128	23	22	18	35	1.96
66442856--66442896	10	4.2	10	87	6	66	73	0	0	26	0.84
66442908--66442945	18	2.1	18	90	0	58	31	10	10	47	1.72
66453832--66453872	5	8.6	5	81	10	50	4	14	0	80	0.87
66454568--66454640	20	3.7	20	78	12	62	30	0	5	64	1.16
66455728--66455798	27	2.6	27	78	8	72	25	22	12	39	1.89
66455762--66455873	27	4.1	27	81	0	98	24	25	14	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66456820--66456928	31	3.5	31	87	3	121	52	11	15	20	1.74
66457065--66457166	27	3.8	26	85	5	123	36	20	23	19	1.95
66457325--66457389	22	3.0	21	73	13	60	35	23	21	20	1.96
66457834--66458035	27	7.2	27	79	9	91	24	20	19	35	1.96
66457906--66458038	27	4.9	27	89	2	196	24	21	19	35	1.96
66458000--66458207	27	7.8	27	79	6	192	28	10	21	39	1.85
66458059--66458225	54	3.1	54	85	0	201	29	7	20	42	1.79
66458059--66458230	80	2.1	81	82	7	208	30	6	20	41	1.78
66458059--66458245	54	3.5	52	83	3	133	30	6	21	41	1.79
66458236--66458548	27	11.6	27	93	0	482	43	9	20	26	1.82
66458563--66458654	27	3.4	26	75	11	78	31	9	19	39	1.84
66468376--66468473	49	2.0	49	95	0	178	41	12	12	33	1.80
66476478--66476559	30	2.7	30	86	0	110	14	23	35	26	1.93
66486736--66486790	26	2.1	26	100	0	110	30	12	10	45	1.77
66490335--66490391	29	2.0	28	83	6	71	43	5	26	24	1.75
66490743--66490898	43	3.7	42	79	5	154	26	14	25	33	1.94
66491033--66491077	22	2.0	22	95	0	81	37	8	28	24	1.86
66493082--66493127	18	2.6	18	74	16	51	34	0	6	58	1.24
66496488--66496588	40	2.6	40	85	3	134	12	14	37	34	1.85
66505660--66505831	45	3.7	46	79	11	208	22	20	27	29	1.98
66506055--66506092	19	2.0	20	85	15	53	36	0	23	39	1.55
66513242--66513414	46	3.7	46	79	10	208	21	20	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66513239--66513409	93	1.8	93	93	0	297	21	21	28	28	1.98
66513639--66513676	19	2.0	20	85	15	53	36	0	23	39	1.55
66515193--66515237	17	2.6	17	85	0	63	17	20	42	20	1.90
66515661--66515739	40	2.0	40	85	5	106	16	16	32	34	1.91
66516805--66516953	37	4.0	37	93	0	244	33	6	12	47	1.66
66516827--66516930	20	5.5	19	70	13	81	34	5	13	46	1.67
66516810--66516944	17	7.4	17	66	14	72	32	5	12	49	1.63
66516960--66517000	9	4.6	9	84	0	55	31	9	17	41	1.82
66516952--66517000	18	2.7	18	93	0	80	30	10	18	40	1.84
66531985--66532027	17	2.4	18	80	7	61	55	0	23	20	1.43
66537435--66537477	6	6.8	6	86	7	59	51	0	34	13	1.42
66537402--66537467	15	4.6	15	71	17	59	50	1	34	13	1.51
66540569--66540612	20	2.2	20	87	0	61	34	0	6	59	1.24
66547675--66547713	20	2.0	20	85	10	53	46	0	2	51	1.14
66549695--66549855	60	2.7	60	79	9	157	29	25	18	27	1.98
66553949--66554117	47	3.6	47	90	3	250	28	30	8	33	1.86
66558404--66558705	40	7.6	40	82	7	287	24	28	22	24	2.00
66559020--66559093	29	2.6	29	87	8	98	25	31	17	25	1.97
66559077--66559220	43	3.3	43	99	0	279	27	35	13	22	1.93
66560643--66560812	47	3.6	47	90	1	250	28	30	8	32	1.86
66567481--66567572	42	2.2	42	92	0	148	30	13	25	31	1.93
66570679--66570713	17	2.1	17	100	0	70	48	5	28	17	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66570804--66570885	26	3.2	26	87	0	119	37	21	7	32	1.81
66573591--66573699	52	2.1	51	84	3	146	29	20	6	44	1.76
66583012--66583158	26	5.7	26	82	0	177	60	5	4	29	1.39
66583014--66583158	78	1.9	78	86	0	209	60	5	4	29	1.40
66585320--66585435	48	2.4	47	80	4	126	26	23	20	29	1.99
66589590--66590050	131	3.5	132	78	6	355	33	19	19	27	1.96
66592545--66592591	19	2.4	20	89	3	69	14	8	29	46	1.74
66596737--66596905	48	3.5	48	73	7	146	28	21	18	31	1.97
66598186--66598225	18	2.2	18	95	0	71	35	10	20	35	1.86
66603350--66603401	28	1.9	26	84	7	68	36	3	7	51	1.49
66608563--66608662	27	3.7	27	93	0	155	31	24	27	18	1.97
66610273--66610356	26	3.2	26	94	0	141	35	23	7	33	1.82
66614291--66614383	46	2.0	46	97	0	177	34	7	25	32	1.84
66615944--66616051	25	4.3	25	75	2	83	37	8	13	39	1.75
66619005--66619137	65	2.0	65	97	0	248	18	15	27	39	1.90
66620315--66621116	428	1.9	428	91	1	1329	30	18	17	33	1.94
66624517--66624562	21	2.2	21	84	0	56	15	21	39	23	1.92
66626861--66627003	46	3.2	45	85	7	191	27	21	21	28	1.99
66629407--66629463	27	2.1	28	83	3	71	36	7	15	40	1.75
66629717--66629942	49	4.8	49	76	14	242	26	16	25	30	1.97
66629765--66629848	26	3.3	26	63	21	68	26	16	25	32	1.96
66629770--66629930	88	1.8	86	89	2	250	26	16	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66629770--66629940	86	2.0	88	87	2	247	26	17	25	30	1.97
66633328--66633500	68	2.6	64	75	11	170	31	15	26	26	1.96
66640256--66640485	116	2.0	117	95	0	417	29	13	21	36	1.91
66641114--66641241	68	1.9	68	81	3	159	40	12	19	27	1.87
66645526--66645558	13	2.4	14	80	10	50	9	9	6	75	1.18
66649830--66649932	43	2.4	43	98	0	197	26	34	15	23	1.94
66651785--66651863	37	2.1	37	90	0	122	25	31	18	24	1.98
66651982--66652501	47	11.1	47	94	0	871	29	29	9	32	1.88
66656076--66656119	18	2.4	18	100	0	88	31	15	13	38	1.87
66669041--66669135	40	2.4	40	81	11	106	28	24	15	31	1.96
66679528--66679692	80	2.0	81	91	1	269	41	15	16	27	1.88
66682408--66682479	30	2.4	30	88	0	108	25	26	19	29	1.99
66684451--66684487	14	2.5	15	95	4	67	18	21	29	29	1.97
66684673--66684727	28	2.0	28	85	0	74	25	12	32	29	1.93
66684683--66684727	14	3.2	14	83	0	63	26	11	31	31	1.91
66684615--66684728	43	2.6	44	82	5	142	23	12	34	29	1.91
66684769--66684824	15	3.5	15	76	11	58	21	21	30	26	1.98
66688482--66688534	26	2.0	26	85	7	72	33	37	18	9	1.83
66689440--66689497	29	2.0	29	100	0	116	24	24	20	31	1.98
66690989--66691151	15	11.3	15	70	12	110	21	19	27	31	1.97
66690995--66691156	85	1.9	85	84	0	216	19	19	29	31	1.96
66691004--66691185	85	2.2	85	80	3	206	20	21	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66691333--66691380	18	2.7	17	83	6	51	35	6	25	33	1.81
66691437--66691601	80	2.1	80	83	4	208	27	17	18	35	1.94
66694604--66694655	11	4.9	11	83	9	72	28	28	0	42	1.56
66694598--66694655	20	2.7	21	86	10	82	31	27	0	41	1.56
66694682--66694712	15	2.1	15	93	0	53	22	6	0	70	1.09
66695775--66695808	7	4.9	7	100	0	68	26	0	14	58	1.36
66696851--66697584	116	6.3	116	95	0	1315	39	3	9	47	1.53
66700600--66701012	126	3.3	126	89	2	614	27	21	18	32	1.97
66701063--66701295	96	2.4	98	82	7	273	40	16	1	41	1.57
66701611--66701658	21	2.2	21	89	10	71	39	0	2	58	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325