Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  137  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44256293--44256369
38
2.0
38
97
0
145
48
16
9
25
1.76
44258907--44259145
49
4.8
49
82
3
271
30
25
17
27
1.97
44258964--44259045
26
3.2
26
63
30
68
31
28
14
25
1.95
44258921--44259151
101
2.3
98
84
4
284
30
25
17
26
1.97
44259399--44259452
27
2.0
27
85
0
72
38
14
7
38
1.75
44259602--44259764
80
2.0
80
92
2
274
24
20
11
42
1.85
44260860--44260904
23
2.0
23
91
4
74
46
15
4
33
1.66
44260857--44260914
22
2.6
22
86
7
82
43
17
3
36
1.66
44260869--44260927
19
2.8
20
85
10
66
38
16
6
37
1.76
44265984--44266028
23
2.0
23
91
4
74
46
17
4
31
1.68
44266010--44266060
19
2.9
17
83
11
66
35
17
9
37
1.83
44265981--44266038
22
2.6
22
86
7
82
43
18
3
34
1.68
44265994--44266051
19
2.8
20
84
10
64
39
17
6
36
1.76
44268505--44268538
15
2.5
13
90
9
50
44
0
0
55
0.99
44274095--44274127
10
3.3
10
95
0
57
60
3
0
36
1.12
44279077--44279295
45
4.9
45
90
0
321
25
19
15
39
1.90
44279077--44279295
90
2.4
90
91
0
366
25
19
15
39
1.90
44284812--44285075
45
5.9
45
91
0
395
25
19
15
39
1.91
44286064--44286151
40
2.2
40
81
8
106
34
15
25
25
1.95
44286085--44286275
40
4.5
40
71
19
134
33
17
23
26
1.96
44286885--44286964
21
3.5
21
68
21
61
38
5
3
52
1.41
44286890--44286974
23
3.6
23
72
9
80
37
5
3
52
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44286871--44287019
49
3.0
49
96
0
271
38
8
4
48
1.53
44287003--44287054
25
2.2
23
83
13
61
46
7
1
44
1.43
44287079--44287148
31
2.3
31
80
5
79
48
10
4
37
1.56
44287574--44287632
8
6.9
9
81
16
56
69
1
1
27
1.07
44287597--44287681
7
11.6
7
94
5
134
71
2
0
25
0.98
44287597--44287681
15
5.7
15
94
4
138
71
2
0
25
0.98
44287733--44287763
16
1.9
16
100
0
62
67
6
0
25
1.14
44290424--44290466
19
2.3
19
88
8
61
37
0
6
55
1.27
44292147--44292242
43
2.2
43
87
7
142
25
28
20
26
1.99
44297384--44297415
17
1.9
16
93
6
55
25
31
31
12
1.92
44301653--44301682
15
1.9
16
93
6
53
40
26
0
33
1.57
44303045--44303217
46
3.7
46
79
10
208
21
20
27
29
1.98
44303042--44303212
93
1.8
93
93
0
297
21
21
28
28
1.98
44310393--44310519
45
2.8
45
91
1
200
21
21
28
29
1.98
44311368--44311410
20
2.2
20
82
0
50
51
2
2
44
1.27
44338969--44339151
40
4.6
40
81
6
194
23
21
27
27
1.99
44340731--44340796
11
6.3
11
76
13
52
34
0
1
63
1.04
44353475--44353532
30
2.0
30
83
10
75
50
18
12
18
1.78
44353769--44353869
25
4.0
25
73
5
87
23
17
27
30
1.97
44354805--44354886
42
2.0
42
85
0
110
20
31
23
24
1.98
44355309--44355333
5
5.0
5
100
0
50
20
0
0
80
0.72
44356784--44356885
28
3.5
27
71
19
80
24
27
20
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44356785--44356921
60
2.3
59
81
8
143
26
24
20
29
1.99
44356926--44356968
19
2.2
20
83
4
52
34
25
18
20
1.96
44359363--44359387
12
2.1
12
100
0
50
52
8
0
40
1.31
44363316--44363354
19
2.1
19
95
0
69
25
33
5
35
1.78
44382057--44382451
198
2.0
198
98
0
772
35
15
17
32
1.91
44383541--44383567
12
2.2
12
100
0
54
59
0
7
33
1.25
44389863--44389914
27
2.0
26
84
3
68
17
26
21
34
1.95
44397284--44397343
27
2.3
27
88
2
86
21
23
20
35
1.96
44407158--44407238
37
2.2
37
93
0
135
40
28
12
18
1.87
44407149--44407277
37
3.5
37
83
5
120
41
27
13
17
1.86
44415935--44415990
20
2.8
20
83
2
69
35
23
14
26
1.93
44418294--44418318
3
8.3
3
100
0
50
64
0
0
36
0.94
44418362--44418386
12
2.1
12
100
0
50
52
8
0
40
1.31
44425970--44426122
43
3.6
43
88
0
209
28
19
29
22
1.98
44434177--44434213
18
2.1
19
90
10
60
35
27
8
29
1.85
44436585--44436666
30
2.7
30
100
0
164
29
34
18
18
1.94
44440646--44440913
48
5.7
47
81
5
256
29
19
27
24
1.98
44440646--44440913
94
2.8
94
80
10
271
29
19
27
24
1.98
44447767--44447803
18
2.1
19
90
10
60
35
27
8
29
1.85
44450557--44450749
47
4.1
47
87
1
271
32
10
30
26
1.90
44450557--44450749
93
2.1
94
88
2
282
32
10
30
26
1.90
44450575--44450901
93
3.4
95
80
8
269
34
8
28
28
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44450720--44450913
98
2.0
96
88
4
291
34
6
27
30
1.83
44450719--44450903
48
3.8
48
86
5
273
35
5
26
31
1.81
44451049--44451191
37
3.9
37
88
1
216
22
16
32
28
1.96
44452463--44452851
40
9.7
40
86
0
535
25
21
26
26
1.99
44456090--44456262
46
3.7
46
80
10
217
21
21
27
28
1.99
44456087--44456257
93
1.8
93
94
0
306
21
21
28
28
1.99
44459591--44459781
47
4.1
47
88
0
265
32
11
29
26
1.91
44459755--44459948
98
2.0
96
89
4
300
34
7
28
29
1.85
44459754--44459938
48
3.8
48
87
5
282
35
7
27
30
1.83
44460084--44460228
37
3.9
37
92
1
247
22
17
31
28
1.97
44481495--44481539
20
2.3
20
88
3
65
28
15
26
28
1.96
44481568--44481672
28
3.6
28
70
20
88
25
20
28
24
1.99
44481560--44481704
61
2.4
61
86
8
188
26
20
26
26
1.99
44485819--44485851
17
1.9
17
100
0
66
60
0
24
15
1.35
44485991--44486051
26
2.4
26
86
8
81
44
9
11
34
1.74
44489349--44489388
19
2.1
19
85
0
53
42
12
10
35
1.76
44491898--44492227
48
6.9
48
80
2
304
26
28
18
27
1.98
44491944--44492227
144
2.0
144
85
1
381
26
29
16
27
1.97
44494624--44494665
21
2.0
22
86
13
61
35
26
2
35
1.70
44498490--44498522
3
11.3
3
87
6
50
0
30
0
69
0.88
44515540--44515595
12
4.7
12
82
8
69
12
25
0
62
1.30
44515527--44515595
36
1.9
36
84
0
93
14
26
0
59
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44515535--44515595
24
2.5
24
83
0
77
16
24
0
59
1.37
44516623--44516648
10
2.6
10
100
0
52
15
0
7
76
0.99
44519229--44519283
28
1.9
28
85
10
76
20
41
20
18
1.90
44528175--44528212
14
2.8
14
92
4
60
21
34
7
36
1.82
44536975--44537219
27
9.1
27
87
0
355
28
22
8
41
1.82
44536979--44537246
81
3.3
81
88
0
383
28
20
8
42
1.81
44537234--44537413
27
6.7
27
81
6
170
42
20
6
30
1.78
44537038--44537288
81
3.1
81
84
0
214
31
22
7
38
1.82
44537234--44537389
52
2.9
52
80
6
170
42
22
5
29
1.77
44537234--44537391
79
2.0
80
88
5
239
41
22
5
29
1.77
44537433--44537676
27
9.0
27
89
0
344
35
19
20
24
1.96
44537880--44537949
25
2.8
25
88
0
95
28
22
21
27
1.99
44537905--44537962
24
2.4
25
81
16
77
31
17
22
29
1.96
44540152--44540208
27
2.2
25
78
9
62
54
12
22
10
1.68
44542128--44542206
28
2.8
28
74
0
77
35
20
20
24
1.96
44545301--44545393
48
1.9
48
91
0
150
27
20
21
30
1.98
44545304--44545419
48
2.4
47
82
5
126
28
19
24
27
1.99
44549321--44549546
40
5.8
40
86
7
272
26
27
22
23
1.99
44549297--44549541
79
3.2
79
85
6
306
26
26
22
24
2.00
44556452--44556716
40
6.7
40
88
1
338
27
27
21
23
1.99
44558798--44559005
53
3.9
54
78
8
217
23
24
16
36
1.95
44558798--44559011
54
4.0
55
78
10
201
23
23
16
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44558800--44558997
108
1.8
108
84
3
272
22
24
17
35
1.95
44559198--44559281
44
1.9
44
82
4
107
29
21
10
38
1.87
44559821--44559878
30
1.9
31
92
3
100
31
25
8
34
1.86
44565027--44565133
42
2.5
42
78
13
128
28
21
16
33
1.95
44565012--44565133
43
2.9
41
77
7
127
27
22
16
32
1.96
44567694--44567744
25
2.0
25
100
0
102
23
11
23
41
1.87
44579733--44579773
19
2.2
19
91
8
66
65
19
0
14
1.26
44580904--44581043
51
2.7
51
83
4
158
27
27
18
26
1.98
44581053--44581174
50
2.4
51
83
2
147
32
27
14
24
1.95
44584775--44584860
44
2.0
44
97
0
163
36
25
12
25
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325