genome.fa.s3.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  167  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54036109--54036163	11	5.4	11	70	16	55	30	20	12	36	1.90
54038346--54038496	82	1.9	80	84	5	205	22	18	26	32	1.97
54038586--54038710	35	3.6	35	80	4	153	28	9	18	44	1.81
54054664--54054839	46	3.8	45	81	10	212	21	21	29	28	1.98
54054660--54054831	93	1.8	93	94	0	308	20	21	30	27	1.98
54057749--54057828	15	5.4	15	77	7	83	10	18	13	57	1.64
54057740--54057827	30	3.0	30	80	11	92	10	18	15	55	1.68
54060209--54060385	46	3.8	45	77	10	178	22	20	28	28	1.98
54060205--54060377	93	1.9	93	91	0	283	21	20	29	27	1.98
54062040--54062071	15	2.0	17	88	11	50	43	31	0	25	1.55
54062502--54062543	17	2.5	17	96	0	75	35	9	19	35	1.84
54062601--54062662	26	2.5	26	92	5	101	43	16	4	35	1.69
54076514--54076624	44	2.6	44	84	5	138	23	21	21	33	1.97
54076530--54076686	43	3.7	42	82	4	163	23	19	25	31	1.98
54086292--54086379	29	3.1	29	91	1	133	25	12	30	31	1.92
54090788--54090962	47	3.7	47	79	9	173	24	29	19	26	1.98
54090788--54090962	94	1.9	93	86	7	255	24	29	19	26	1.98
54100214--54100244	16	1.9	16	93	0	53	29	6	16	48	1.70
54100604--54100649	3	15.3	3	100	0	92	67	0	0	32	0.91
54111296--54111347	20	2.6	20	90	6	79	28	13	17	40	1.87
54111758--54111828	38	1.9	36	82	5	88	33	7	21	38	1.80
54114355--54114424	23	2.9	24	85	6	97	38	17	20	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54114323--54114432	47	2.3	50	79	4	127	30	20	20	28	1.98
54119302--54119359	25	2.4	25	80	8	66	44	24	10	20	1.82
54141856--54141905	11	4.7	10	78	11	55	24	2	2	72	1.06
54141910--54141966	18	3.1	19	85	10	73	40	0	1	57	1.09
54141912--54141967	9	6.1	9	76	10	51	39	0	1	58	1.08
54146358--54146682	23	14.1	23	83	3	208	45	19	14	20	1.84
54146358--54146682	46	7.1	46	78	7	275	45	19	14	20	1.84
54146358--54146682	69	4.7	69	79	6	325	45	19	14	20	1.84
54159193--54159223	16	1.9	16	93	0	53	58	3	19	19	1.53
54159736--54159829	48	2.0	48	89	4	145	27	20	26	25	1.99
54165045--54165269	40	5.7	40	89	3	278	26	26	21	25	1.99
54169712--54169857	40	3.7	40	84	7	181	23	22	27	26	2.00
54169712--54169890	80	2.2	80	81	6	195	25	21	26	25	2.00
54180001--54180275	48	5.7	48	81	3	331	27	31	15	25	1.96
54180001--54180275	96	2.9	96	84	3	365	27	31	15	25	1.96
54179999--54180267	144	1.9	143	87	4	398	27	31	14	26	1.95
54184384--54184467	40	2.1	40	95	0	150	42	5	21	29	1.76
54185576--54185608	16	2.1	16	94	0	57	57	3	18	21	1.53
54198734--54198917	40	4.6	40	91	4	275	26	26	21	26	1.99
54203533--54203704	93	1.8	93	92	0	290	27	28	22	22	1.99
54203527--54203701	46	3.8	45	79	10	192	28	28	21	21	1.99
54207907--54207956	24	2.1	24	85	7	66	76	4	12	8	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54207935--54207959	5	5.0	5	100	0	50	80	0	20	0	0.72
54210719--54210762	21	2.1	21	100	0	88	27	18	27	27	1.98
54217744--54218006	40	6.6	40	87	3	316	24	20	28	26	1.99
54217783--54218041	80	3.3	80	84	3	238	25	20	28	25	1.99
54225662--54225922	40	6.6	39	84	8	262	24	20	28	26	1.99
54225662--54225922	78	3.3	78	84	5	303	24	20	28	26	1.99
54225662--54225922	118	2.2	119	82	4	305	24	20	28	26	1.99
54225663--54225957	118	2.5	117	79	6	283	25	20	28	25	1.99
54229177--54229348	46	3.7	46	77	12	190	22	22	27	27	1.99
54234949--54235119	46	3.7	46	79	11	206	21	22	27	28	1.99
54248896--54249017	43	2.9	42	82	2	154	27	23	17	31	1.97
54251221--54251270	25	2.0	25	96	0	91	40	24	6	30	1.79
54254608--54254632	11	2.3	11	100	0	50	52	16	0	32	1.44
54261460--54261564	6	17.0	6	70	16	54	47	14	17	20	1.82
54261465--54261560	25	3.8	25	78	6	88	46	14	17	20	1.83
54261493--54261594	31	3.3	31	92	0	168	48	14	15	21	1.81
54261996--54262218	27	8.3	27	86	2	270	25	20	20	34	1.96
54262203--54262301	27	3.7	27	80	0	117	27	7	21	44	1.78
54262146--54262299	54	2.9	54	79	5	143	28	11	22	38	1.88
54262313--54262454	27	5.3	27	89	0	212	41	8	21	28	1.82
54262266--54262461	81	2.4	81	82	1	196	39	8	20	31	1.82
54262313--54262453	54	2.6	54	94	0	237	41	8	21	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54262464--54262605	27	5.3	27	79	6	153	30	7	21	40	1.79
54264594--54264709	6	18.8	6	69	15	67	48	13	16	21	1.81
54264569--54264625	18	3.2	18	76	0	60	50	14	14	21	1.76
54264599--54264709	31	3.6	31	88	0	168	47	14	16	21	1.82
54265111--54265279	27	6.3	27	90	0	239	24	20	19	34	1.96
54265261--54265389	27	4.8	27	78	0	114	29	9	20	40	1.84
54265261--54265387	54	2.4	54	78	2	130	29	9	21	39	1.85
54265130--54265306	81	2.2	81	85	4	232	24	18	21	35	1.96
54265291--54265430	54	2.6	54	82	2	147	29	7	22	41	1.80
54265397--54265541	27	5.4	27	89	0	227	40	8	24	26	1.83
54265357--54265512	81	1.9	81	85	2	215	36	8	23	31	1.86
54265397--54265549	54	2.8	54	92	0	252	39	8	24	27	1.84
54265552--54265693	27	5.3	27	79	6	153	29	9	21	40	1.84
54274062--54274181	28	4.3	28	90	0	177	20	15	37	27	1.92
54274507--54274963	27	17.1	27	78	8	388	39	19	9	31	1.83
54274497--54274955	53	8.6	52	78	9	369	39	18	9	31	1.84
54274496--54275020	80	6.6	80	80	6	483	39	18	9	31	1.84
54275518--54275611	27	3.5	27	72	8	68	22	20	29	27	1.98
54293142--54293844	49	14.6	49	93	2	1106	28	29	8	33	1.86
54293142--54293844	145	4.9	145	91	3	1116	28	29	8	33	1.86
54293142--54293844	194	3.7	194	94	1	1202	28	29	8	33	1.86
54316287--54316365	37	2.1	37	86	4	106	26	30	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54316484--54317626	47	24.4	47	95	2	2059	29	29	8	32	1.87
54325375--54325471	40	2.4	40	81	10	117	24	24	23	26	2.00
54330264--54330373	40	2.8	40	85	10	161	23	22	27	26	2.00
54330262--54330405	40	3.6	39	81	11	150	26	21	25	26	2.00
54330631--54330675	22	2.0	21	84	16	56	33	17	13	35	1.89
54336149--54336413	47	5.7	47	81	7	258	22	30	19	27	1.98
54353219--54353320	29	3.5	29	84	5	98	28	29	6	35	1.83
54355328--54355397	35	2.0	35	94	0	122	17	17	22	42	1.88
54360962--54361729	383	2.0	383	97	0	1437	37	15	13	33	1.87
54362690--54362877	49	3.8	49	85	2	268	26	19	26	28	1.98
54362688--54362872	100	1.9	100	95	0	334	24	20	26	28	1.99
54365616--54365689	37	2.0	37	94	0	130	29	9	14	45	1.77
54371471--54371727	40	6.5	40	85	3	315	23	21	28	26	1.99
54371471--54371692	79	2.8	80	87	4	306	22	22	27	27	1.99
54371471--54371727	119	2.2	120	85	4	333	23	21	28	26	1.99
54374036--54374155	48	2.5	47	87	1	168	29	15	24	31	1.95
54374036--54374246	47	4.7	47	78	10	188	29	14	24	31	1.94
54374134--54374291	38	3.9	38	72	13	127	30	14	24	30	1.95
54374078--54374284	85	2.4	85	90	0	306	30	14	24	30	1.94
54377529--54377574	15	3.1	15	87	0	65	15	15	15	54	1.72
54380368--54380574	85	2.4	85	93	0	342	28	14	25	31	1.95
54380420--54380789	38	9.0	38	76	15	299	30	15	23	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54380543--54380782	85	2.8	85	92	0	408	31	15	22	30	1.95
54380420--54380697	123	2.3	123	91	0	448	29	15	24	30	1.95
54380288--54380789	208	2.4	207	88	5	736	30	15	22	31	1.95
54383563--54383675	43	2.6	43	78	12	124	30	23	21	24	1.99
54398075--54398204	46	2.8	46	80	4	154	21	18	29	30	1.97
54405732--54405863	44	3.1	41	82	8	147	24	17	24	34	1.96
54405737--54405864	42	3.0	43	82	6	143	25	17	24	32	1.96
54407625--54407653	14	2.0	15	93	6	51	27	0	20	51	1.47
54413309--54413466	24	6.5	24	66	10	88	31	29	14	24	1.95
54416752--54416997	49	4.9	50	81	4	264	27	17	25	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325