genome.fa.s3.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  180  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58534963--58534991	7	4.1	7	100	0	58	13	0	44	41	1.44
58536114--58536159	7	6.9	7	85	9	60	15	13	15	56	1.68
58537745--58539101	585	2.3	574	85	3	1767	30	21	15	32	1.95
58542649--58542689	21	2.0	21	85	9	57	58	4	4	31	1.40
58543432--58543464	16	2.1	16	94	0	57	48	0	3	48	1.17
58543908--58543933	5	5.2	5	100	0	52	0	19	0	80	0.71
58546660--58546712	23	2.3	24	78	15	58	60	1	5	32	1.31
58546702--58546747	24	1.9	24	95	0	83	58	0	2	39	1.10
58550197--58550240	21	2.1	21	87	8	63	52	0	4	43	1.22
58552864--58552898	14	2.5	14	100	0	70	34	22	5	37	1.78
58553779--58553869	33	2.8	32	79	11	103	18	35	18	27	1.95
58554536--58554570	18	1.9	18	94	0	61	31	17	14	37	1.89
58559711--58559754	22	2.0	23	91	8	74	43	22	15	18	1.88
58559944--58560038	28	3.6	24	81	13	93	46	33	4	15	1.66
58559958--58560041	28	3.0	28	91	1	132	46	30	3	19	1.66
58563096--58563174	37	2.1	37	90	0	122	25	31	18	24	1.98
58563293--58563452	47	3.4	47	92	0	257	28	31	8	32	1.86
58563343--58563421	25	3.3	25	66	16	76	31	29	5	34	1.79
58572426--58572470	21	2.1	21	84	8	56	40	20	24	15	1.91
58578694--58578873	79	2.3	80	81	7	206	25	27	22	25	2.00
58578673--58578873	40	5.1	40	79	8	214	24	27	21	25	2.00
58583697--58583757	24	2.5	24	86	5	79	34	29	16	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58584273--58584311	20	2.0	20	85	9	55	28	20	0	51	1.48
58586700--58587001	85	3.6	85	90	1	473	30	23	25	21	1.99
58586616--58587017	85	4.7	85	83	4	429	31	23	23	21	1.98
58587290--58587325	17	2.3	15	90	9	54	44	47	0	8	1.33
58588933--58589161	126	1.8	125	91	4	381	27	16	17	39	1.90
58590597--58590648	27	1.9	27	96	0	95	40	15	1	42	1.58
58590598--58590655	27	2.1	27	87	0	80	43	12	1	43	1.52
58590830--58590865	18	1.9	19	94	5	65	2	27	0	69	1.02
58590831--58590872	18	2.4	19	84	15	63	2	28	0	69	1.01
58590998--58591083	27	3.2	27	84	0	91	12	45	19	22	1.84
58593585--58593629	23	2.0	23	86	0	63	35	0	0	64	0.94
58595958--58596002	22	2.0	22	82	4	54	31	6	6	55	1.52
58596946--58596972	2	13.5	2	100	0	54	48	0	0	51	1.00
58598474--58598512	20	2.0	20	89	0	60	35	2	12	48	1.55
58601981--58602034	24	2.2	24	93	0	99	27	11	7	53	1.63
58602453--58602727	149	1.8	150	84	2	374	29	8	15	45	1.76
58607024--58607068	23	2.0	23	87	8	67	11	4	42	42	1.60
58615540--58615855	55	5.9	54	79	5	316	23	24	17	34	1.96
58615551--58615908	108	3.4	108	84	4	437	23	24	17	34	1.95
58615834--58615955	47	2.6	47	97	0	226	25	24	13	36	1.93
58617867--58617917	6	8.5	6	86	0	57	74	3	1	19	1.07
58617884--58617930	20	2.5	19	78	18	53	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58619553--58619590	16	2.4	17	91	8	62	65	0	10	23	1.23
58620186--58620229	21	2.1	21	91	0	70	4	22	29	43	1.73
58624023--58624068	23	2.0	23	100	0	92	26	13	21	39	1.90
58631038--58631435	47	8.5	47	94	0	652	32	8	29	28	1.87
58631554--58631632	37	2.1	37	88	4	115	25	18	30	25	1.98
58634651--58634692	22	1.9	22	90	0	66	19	33	33	14	1.91
58642178--58642243	33	2.0	33	84	0	87	27	22	18	31	1.97
58642365--58642425	26	2.3	26	80	0	77	39	22	19	18	1.92
58642697--58642919	27	8.3	27	73	16	76	30	8	20	40	1.82
58642697--58642919	81	2.8	81	80	6	265	30	8	20	40	1.82
58642697--58642920	54	4.1	54	77	11	217	30	8	20	40	1.82
58654279--58654435	43	3.7	43	74	10	142	24	17	26	31	1.97
58667941--58667979	20	2.0	20	89	0	60	35	12	2	48	1.55
58674428--58674547	59	2.0	59	100	0	240	28	22	18	30	1.97
58675815--58675893	37	2.1	37	88	4	115	25	30	18	25	1.98
58676012--58676518	47	10.7	47	96	1	883	29	30	8	31	1.87
58676012--58676518	192	2.7	188	94	3	883	29	30	8	31	1.87
58676556--58676592	18	2.1	18	90	10	58	37	27	0	35	1.57
58680146--58680388	40	6.3	39	87	9	329	25	28	22	23	1.99
58680146--58680350	77	2.7	76	90	6	324	26	28	21	23	1.99
58680157--58680393	77	3.1	76	88	8	322	26	29	21	23	1.99
58680694--58680772	29	2.7	29	86	5	106	27	32	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58682681--58682759	37	2.1	37	88	4	115	25	30	18	25	1.98
58682878--58683382	47	10.7	47	94	2	861	29	30	8	31	1.87
58682878--58683382	96	5.3	94	95	1	861	29	30	8	31	1.87
58682878--58683382	143	3.6	141	94	2	861	29	30	8	31	1.87
58693920--58694003	24	3.5	24	96	0	150	33	1	39	26	1.64
58693916--58694016	24	4.2	24	93	0	148	33	1	39	24	1.67
58695188--58695267	27	3.0	27	80	7	99	21	25	20	33	1.97
58697126--58697611	46	10.6	46	87	6	596	27	30	9	31	1.88
58697243--58697316	22	3.3	22	65	20	62	27	32	12	28	1.92
58697146--58697590	231	1.9	228	86	5	621	27	30	10	31	1.89
58697454--58697638	46	4.2	42	84	12	162	31	28	8	31	1.86
58698974--58699144	85	2.0	85	97	0	324	27	25	8	38	1.84
58699796--58699856	27	2.2	27	82	11	70	37	21	11	29	1.88
58699988--58700067	27	2.9	28	77	17	96	21	23	21	33	1.97
58700697--58700807	54	2.1	53	89	1	168	18	23	22	36	1.95
58700697--58700807	27	4.2	26	85	7	134	18	23	22	36	1.95
58707026--58707126	24	4.2	24	92	0	148	32	2	39	24	1.71
58708306--58708411	54	2.0	53	90	1	167	18	22	21	36	1.95
58708305--58708415	27	4.2	26	84	7	134	18	23	22	36	1.95
58717780--58717818	10	3.6	10	81	18	51	53	0	46	0	1.00
58717777--58717818	12	3.5	13	78	21	56	52	0	47	0	1.00
58722600--58722803	48	4.4	48	74	13	199	27	23	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58722973--58723028	28	2.0	28	96	0	103	35	23	7	33	1.82
58724374--58724436	29	2.2	29	88	0	90	36	14	22	26	1.92
58724603--58724650	19	2.8	16	82	17	69	37	0	16	45	1.48
58727532--58727635	42	2.5	42	83	1	127	24	13	26	35	1.92
58727574--58727684	43	2.6	42	85	1	132	24	13	27	34	1.93
58733832--58733944	40	2.7	42	87	5	160	23	15	27	32	1.95
58737219--58737336	31	3.8	31	91	0	182	30	11	24	33	1.90
58748396--58748456	24	2.5	24	86	5	79	34	29	16	19	1.94
58749654--58749688	16	2.3	16	90	9	56	34	2	0	62	1.10
58752203--58752260	29	2.0	29	93	0	98	37	18	18	24	1.94
58756467--58756527	24	2.5	24	86	5	79	34	29	16	19	1.94
58760597--58760642	22	2.1	22	100	0	92	50	17	17	15	1.79
58761073--58761159	40	2.2	40	87	0	120	31	27	14	26	1.95
58769119--58769162	18	2.2	21	88	11	67	47	4	0	47	1.22
58777601--58777638	19	2.0	20	85	15	53	39	23	0	36	1.55
58777863--58777992	46	2.8	49	80	12	164	29	26	20	23	1.99
58777865--58778008	46	3.1	45	73	18	136	29	27	20	22	1.98
58785251--58785421	93	1.8	93	93	0	297	28	28	21	21	1.98
58785246--58785418	46	3.7	46	79	10	208	29	27	20	21	1.98
58785841--58785897	30	1.9	30	85	0	78	33	24	5	36	1.78
58790718--58790866	43	3.5	42	75	8	142	22	16	28	32	1.95
58790737--58790866	41	3.1	41	78	8	136	23	15	28	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58796749--58797163	48	8.6	48	71	7	234	29	16	27	26	1.97
58796839--58797163	96	3.4	98	76	5	281	28	16	28	26	1.97
58796751--58797115	144	2.5	144	86	1	473	29	15	27	26	1.96
58804419--58804884	48	9.8	48	74	6	329	27	18	29	24	1.98
58804406--58804782	144	2.6	142	88	2	533	28	18	29	24	1.98
58804419--58804879	239	1.9	239	82	2	577	27	18	29	23	1.98
58808377--58808407	15	2.1	15	93	0	53	19	0	25	54	1.44
58808966--58809078	41	2.8	41	90	0	172	23	16	26	33	1.96
58810643--58810679	18	2.1	18	94	0	65	45	2	10	40	1.53
58816038--58816129	41	2.2	42	81	11	100	27	13	25	34	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325