genome.fa.s3.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  135  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43439394--43439615	40	5.6	40	92	1	349	22	23	27	26	2.00
43446548--43446604	28	2.0	28	96	0	105	24	14	15	45	1.83
43449011--43449053	17	2.5	17	80	0	50	69	4	0	25	1.07
43449014--43449055	22	1.9	22	85	9	59	66	4	0	28	1.12
43454330--43454426	49	2.0	49	91	0	158	37	13	14	35	1.85
43456346--43456458	44	2.6	44	98	0	217	30	32	14	22	1.93
43456434--43456606	47	3.7	47	78	6	172	26	30	17	26	1.98
43456294--43456564	44	5.8	46	77	9	169	26	31	16	25	1.97
43461001--43462374	688	2.0	692	84	4	1794	34	17	14	33	1.90
43463034--43463096	31	2.0	31	100	0	126	55	15	6	22	1.63
43466814--43466935	55	2.2	55	80	2	129	21	27	27	24	1.99
43469887--43469916	12	2.4	13	94	5	53	63	0	6	30	1.20
43473392--43473446	28	2.0	28	88	0	83	27	25	23	23	2.00
43473373--43473453	28	2.6	33	71	18	82	29	23	20	25	1.99
43473597--43473653	27	2.1	27	83	0	69	42	24	15	17	1.88
43492643--43492874	50	4.6	50	79	7	220	25	16	27	31	1.97
43492968--43493019	26	2.0	26	85	11	70	38	1	21	38	1.64
43500136--43500361	50	4.5	50	76	9	201	24	18	26	30	1.98
43500461--43500512	27	2.0	26	81	11	61	38	1	23	36	1.66
43511408--43511467	30	2.0	30	90	0	93	28	25	6	40	1.80
43526272--43526542	47	5.8	45	77	10	208	26	19	30	22	1.98
43526272--43526640	94	3.9	91	76	10	257	26	19	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43526276--43526640	49	7.7	49	79	10	239	27	19	29	23	1.98
43532849--43532932	37	2.3	37	85	0	105	29	20	25	25	1.99
43532913--43533140	48	4.8	48	92	0	359	25	17	26	30	1.98
43539221--43539305	40	2.2	39	85	6	109	25	28	20	25	1.99
43544076--43544136	30	2.0	30	87	0	86	40	4	24	29	1.76
43544671--43544914	64	3.8	64	81	5	278	31	15	29	23	1.95
43546246--43546284	20	1.9	21	89	5	62	23	10	20	46	1.81
43557514--43557606	46	2.0	46	95	0	168	34	23	8	33	1.85
43561160--43561225	33	2.0	34	85	8	91	25	28	22	22	1.99
43579940--43579995	23	2.5	23	82	8	71	23	23	19	33	1.97
43586083--43586236	28	5.5	28	96	0	265	33	28	12	25	1.92
43594240--43594390	28	5.4	28	92	1	223	33	28	11	25	1.92
43598063--43598281	40	5.6	40	91	3	340	26	26	23	22	2.00
43598063--43598281	79	2.8	80	90	4	340	26	26	23	22	2.00
43605990--43606211	40	5.6	40	90	1	322	26	26	23	23	2.00
43610946--43611338	3	131.3	3	67	13	125	61	3	7	27	1.38
43610963--43611066	23	4.4	23	73	9	77	66	0	6	25	1.22
43610984--43611046	29	2.2	28	80	8	72	66	0	7	25	1.18
43610963--43611069	49	2.2	47	81	8	126	67	0	6	25	1.21
43611025--43611337	20	16.2	20	64	16	63	60	4	7	28	1.43
43611024--43611063	14	3.2	13	83	16	57	62	2	5	30	1.29
43610948--43611125	25	6.9	25	68	20	91	65	0	7	26	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43613047--43613384	88	3.8	88	86	2	466	22	23	21	32	1.98
43613191--43613329	44	3.2	43	67	11	111	18	23	23	33	1.97
43621431--43621462	9	3.7	9	95	4	57	43	12	21	21	1.86
43621827--43621869	22	2.0	22	81	9	52	16	23	4	55	1.59
43624791--43625191	3	133.7	3	66	15	125	61	3	8	27	1.40
43624791--43624993	83	2.5	82	80	7	209	65	0	6	26	1.24
43624868--43624908	14	2.9	14	89	7	57	60	2	4	31	1.30
43624879--43625053	38	4.5	38	72	11	140	60	1	9	29	1.38
43625676--43625709	17	2.0	17	100	0	68	35	23	0	41	1.55
43631054--43631100	23	2.0	23	100	0	94	29	21	21	27	1.98
43638774--43638798	9	2.8	9	100	0	50	20	0	0	80	0.72
43639924--43640244	47	6.9	44	69	15	137	25	18	31	25	1.97
43640539--43640659	40	3.0	40	100	0	242	29	12	9	47	1.73
43643538--43643587	26	2.0	26	88	4	75	30	22	20	28	1.98
43645084--43645400	46	6.7	48	75	10	201	28	18	27	24	1.98
43645179--43645400	48	4.6	50	75	10	173	27	18	27	25	1.98
43646422--43646450	13	2.2	13	100	0	58	31	17	37	13	1.89
43648661--43648877	46	4.6	48	76	12	145	24	28	17	29	1.97
43648752--43648915	46	3.5	47	81	8	201	25	28	17	29	1.97
43648661--43648915	140	1.8	140	83	5	336	25	28	16	29	1.97
43655646--43656001	46	7.5	46	77	10	253	26	16	30	25	1.97
43655646--43656003	140	2.5	142	82	8	417	26	17	31	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43655688--43656003	96	3.3	96	77	12	271	26	17	31	25	1.97
43661214--43661250	18	2.2	18	85	9	51	70	2	0	27	1.01
43662577--43662637	20	3.1	20	76	17	56	1	18	6	73	1.12
43675969--43676006	19	2.0	19	85	10	51	68	0	10	21	1.19
43677927--43677976	26	1.9	26	100	0	100	38	20	10	32	1.85
43687488--43687539	27	1.9	27	84	7	70	28	3	5	61	1.37
43694785--43694960	56	3.1	56	98	0	343	46	9	21	22	1.80
43696137--43696361	40	5.7	40	83	7	262	25	22	27	24	2.00
43699445--43699475	16	1.9	16	93	0	53	35	22	0	41	1.54
43699442--43699481	20	2.0	20	85	0	53	37	22	0	40	1.54
43699667--43699919	54	4.8	53	79	8	241	21	25	17	35	1.95
43707232--43707486	55	4.8	54	78	7	229	21	24	17	36	1.95
43707279--43707423	53	2.7	53	83	4	166	23	24	17	34	1.96
43722948--43723204	43	6.1	43	76	13	155	30	26	15	26	1.96
43722969--43723202	126	1.8	126	84	5	319	29	26	16	27	1.97
43724006--43724031	6	4.3	6	100	0	52	0	15	0	84	0.62
43732339--43732524	48	3.9	48	85	2	230	23	29	19	27	1.98
43732270--43732524	96	2.6	96	79	4	246	22	28	20	28	1.99
43735908--43736085	91	2.0	90	93	1	302	22	14	24	39	1.91
43739643--43739675	6	5.7	6	92	3	50	15	9	0	75	1.03
43745599--43745658	21	2.9	21	90	2	86	20	28	40	11	1.87
43746847--43747128	48	5.9	48	78	2	289	25	26	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43746845--43747128	96	2.9	96	89	0	424	25	27	18	29	1.98
43746848--43747118	144	1.9	145	82	3	341	25	26	18	29	1.98
43749804--43749900	27	3.6	27	90	2	149	24	13	30	30	1.93
43757976--43758153	27	6.6	27	83	3	196	26	14	29	29	1.95
43757976--43758153	54	3.3	55	84	4	236	26	14	29	29	1.95
43760517--43760734	48	4.5	48	88	1	276	24	29	18	27	1.98
43768162--43768638	48	9.9	48	77	1	445	25	26	18	29	1.98
43768168--43768638	96	4.9	96	86	1	611	26	25	18	29	1.98
43774728--43774852	19	6.3	19	69	12	65	63	3	4	29	1.28
43774769--43774870	38	2.6	38	77	10	100	65	2	3	27	1.24
43774859--43774930	28	2.5	28	78	13	67	58	1	9	30	1.39
43774786--43774932	9	15.7	9	67	17	59	61	2	6	29	1.34
43777574--43777638	33	2.0	33	96	0	121	55	9	18	16	1.67
43779212--43779568	190	1.9	176	85	7	480	52	3	5	38	1.43
43788566--43788609	21	2.1	21	82	0	52	2	18	4	75	1.09
43790942--43790974	15	2.1	16	88	5	50	0	33	9	57	1.30
43799456--43799521	21	3.3	21	75	16	68	27	34	4	33	1.77
43799462--43799527	18	3.4	19	82	12	89	24	36	4	34	1.76
43803546--43803783	47	5.1	47	96	0	431	32	8	29	29	1.87
43803546--43803988	94	4.5	94	82	8	535	32	9	28	29	1.88
43803759--43803799	16	2.6	16	92	7	66	39	0	21	39	1.54
43803712--43803846	63	2.1	63	94	2	236	34	6	25	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43803665--43803894	110	2.1	111	91	2	383	34	7	26	31	1.84
43803775--43803988	47	4.6	47	88	1	286	33	9	28	28	1.88
43803618--43803937	157	2.0	157	93	1	543	33	7	27	30	1.85
43803570--43803989	204	2.1	205	90	1	673	33	8	28	29	1.87
43804107--43804185	37	2.1	37	88	4	115	25	18	30	25	1.98
43813742--43813914	46	3.7	46	76	14	194	21	20	27	30	1.98
43813739--43813909	93	1.8	93	93	2	299	21	20	28	29	1.98
43816438--43816470	4	8.2	4	100	0	66	0	24	0	75	0.80
43829653--43829828	46	3.8	46	75	10	178	23	19	26	30	1.98
43829649--43829820	93	1.8	93	91	0	281	23	19	27	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325