genome.fa.s3.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  109  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35144345--35144753	143	2.9	143	88	4	646	33	8	29	28	1.87
35150974--35151024	21	2.4	21	83	0	66	33	11	49	5	1.64
35151355--35151447	43	2.2	43	82	3	116	37	24	15	22	1.93
35151432--35151547	43	2.7	43	89	2	171	32	20	21	25	1.97
35155395--35155514	33	3.6	33	86	2	134	40	17	5	36	1.71
35179215--35179256	21	2.0	21	90	0	66	30	23	14	30	1.94
35182395--35182480	42	2.0	42	90	0	136	39	31	8	20	1.82
35184017--35184093	37	2.1	37	100	0	154	44	12	12	29	1.81
35187244--35187428	79	2.3	81	84	7	236	24	22	27	25	2.00
35187245--35187428	40	4.6	40	83	9	216	24	22	27	25	2.00
35187297--35187461	79	2.1	79	84	6	210	26	21	27	25	1.99
35195209--35195393	79	2.3	81	84	7	236	24	22	27	25	2.00
35195210--35195393	40	4.6	40	83	9	216	24	22	27	25	2.00
35195262--35195426	79	2.1	79	84	6	210	26	21	27	25	1.99
35200927--35200981	27	2.0	27	82	10	67	47	1	9	41	1.46
35206792--35206821	11	2.7	11	94	0	51	23	0	6	70	1.11
35207874--35207911	16	2.2	19	86	13	55	15	15	2	65	1.38
35211448--35211473	6	4.3	6	100	0	52	30	19	34	15	1.93
35216605--35216743	69	2.0	69	98	0	269	28	32	12	26	1.93
35219755--35219841	45	1.9	45	83	4	113	26	21	12	39	1.89
35227155--35227180	9	2.9	9	100	0	52	88	0	0	11	0.52
35231564--35231611	5	9.6	5	100	0	96	81	0	0	18	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35233231--35233453	46	4.9	45	77	1	158	34	19	19	26	1.96
35233196--35233450	92	2.8	93	77	2	280	33	19	19	27	1.96
35237886--35238062	46	3.9	44	77	11	185	23	20	27	28	1.99
35237883--35238054	93	1.8	93	91	0	281	22	21	28	27	1.99
35240601--35240785	79	2.3	82	84	7	238	25	27	22	24	2.00
35240582--35240785	40	5.1	40	82	8	238	25	27	22	25	2.00
35246259--35246310	27	2.0	26	84	3	68	34	21	26	17	1.95
35249784--35249889	55	1.9	55	94	3	187	23	17	19	38	1.93
35253171--35253226	28	2.0	28	100	0	112	42	28	3	25	1.71
35257052--35257095	16	2.6	17	79	13	56	63	0	0	36	0.95
35286227--35286352	47	2.7	46	81	7	137	23	28	19	27	1.99
35294329--35294456	47	2.7	47	84	2	159	32	28	14	24	1.94
35296914--35297060	73	2.0	73	97	0	276	25	25	19	29	1.98
35297549--35297596	25	1.9	25	91	0	78	50	22	14	12	1.77
35298044--35298197	42	3.7	41	80	6	175	29	24	14	31	1.95
35306586--35306843	40	6.5	39	86	2	277	23	23	28	24	2.00
35306586--35306808	120	1.9	120	87	3	333	22	23	28	25	1.99
35306586--35306843	120	2.2	120	83	4	317	23	23	28	24	2.00
35314775--35315072	40	7.5	40	88	1	332	22	23	28	25	1.99
35325358--35325513	42	3.7	42	84	1	204	27	25	16	30	1.97
35329384--35329415	16	2.1	16	94	5	57	34	31	21	12	1.91
35329395--35329436	21	2.0	22	90	4	68	35	30	19	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35338301--35338373	27	2.7	27	80	0	74	24	27	12	35	1.91
35339258--35339393	67	2.0	67	97	0	254	25	13	21	39	1.89
35341646--35341718	38	1.9	37	86	2	101	15	24	27	32	1.95
35344192--35344229	3	13.0	3	94	5	69	68	0	0	31	0.90
35348054--35348086	15	2.3	15	89	5	50	60	6	3	30	1.36
35348188--35348244	17	3.2	17	69	9	51	59	1	5	33	1.30
35350057--35350088	17	2.0	17	88	11	50	59	6	3	31	1.38
35351861--35351918	29	2.0	29	100	0	116	31	13	17	37	1.89
35355538--35355578	21	2.0	21	85	0	55	36	12	9	41	1.76
35357401--35357497	5	17.2	6	74	18	59	51	13	3	31	1.56
35357397--35357442	20	2.2	21	92	7	85	47	19	0	32	1.50
35357397--35357443	11	4.5	11	87	12	73	46	19	0	34	1.50
35374099--35374138	21	1.9	21	89	0	62	57	0	12	30	1.36
35374146--35374186	21	2.0	21	85	0	55	41	9	12	36	1.76
35376366--35376395	15	2.0	15	93	0	51	26	3	26	43	1.70
35377082--35377175	18	5.4	18	92	3	131	28	9	25	36	1.87
35388177--35388214	12	3.3	12	89	7	53	68	5	5	21	1.29
35395329--35395417	29	3.1	30	79	10	98	46	0	0	53	1.00
35395331--35395403	19	3.7	20	87	5	103	45	0	0	54	0.99
35395330--35395403	10	7.6	10	81	15	77	45	0	0	54	1.00
35395352--35395430	19	4.6	16	85	13	72	48	0	0	51	1.00
35400923--35400948	12	2.2	12	100	0	52	50	7	0	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35402229--35402267	21	1.9	21	89	5	62	30	23	10	35	1.88
35402593--35402620	13	2.2	13	100	0	56	46	0	7	46	1.30
35402907--35402945	17	2.3	17	86	8	53	23	2	5	69	1.21
35403203--35403259	27	2.1	28	90	3	89	43	7	7	42	1.58
35409370--35409415	23	2.0	23	100	0	92	39	13	13	34	1.83
35417824--35417866	17	2.4	18	80	7	61	53	0	4	41	1.21
35417964--35417997	11	3.0	11	86	4	50	76	0	23	0	0.79
35419840--35419895	22	2.5	22	85	0	76	25	37	25	12	1.91
35435392--35435609	40	5.4	40	85	5	289	25	27	23	23	2.00
35435392--35435612	81	2.8	78	87	5	300	25	26	23	24	2.00
35443448--35443669	40	5.6	40	86	7	292	25	27	22	24	2.00
35445580--35445655	37	2.1	37	83	14	95	25	7	23	43	1.80
35453502--35453589	36	2.4	37	75	14	85	45	0	10	44	1.37
35455991--35456038	20	2.5	20	78	18	57	29	18	25	27	1.98
35456027--35456165	60	2.3	61	80	8	151	30	20	22	27	1.98
35467277--35467320	21	2.1	21	83	8	54	45	18	6	29	1.75
35470928--35470967	13	3.1	12	83	16	53	42	0	7	50	1.30
35475833--35476008	46	3.8	46	78	12	189	30	28	19	21	1.98
35475840--35476009	93	1.8	93	92	0	286	29	28	20	22	1.98
35475934--35476019	46	1.9	45	85	4	120	31	29	18	20	1.97
35477512--35477578	30	2.2	30	86	0	89	25	28	25	20	1.99
35478291--35478388	33	3.0	33	74	3	90	31	23	13	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35478408--35478579	33	5.3	33	75	9	165	30	22	12	34	1.91
35478572--35478640	29	2.4	29	92	0	111	26	28	10	34	1.89
35483163--35483247	25	3.4	25	73	9	75	21	24	23	30	1.99
35485908--35485971	31	2.1	31	90	0	101	25	23	15	35	1.94
35486179--35486307	47	2.7	48	89	3	197	27	20	20	30	1.98
35486179--35486307	24	5.4	24	91	2	197	27	20	20	30	1.98
35486365--35486421	9	5.9	9	73	15	51	35	21	8	35	1.84
35486361--35486423	20	3.2	20	95	0	117	31	19	12	36	1.89
35490222--35490275	28	1.9	28	100	0	108	46	3	20	29	1.68
35492956--35493009	25	2.2	24	87	9	74	22	25	16	35	1.95
35493001--35493062	25	2.5	25	86	0	97	25	24	20	29	1.99
35497238--35497367	47	2.8	47	80	8	149	24	16	25	33	1.95
35502927--35503032	29	3.7	29	80	1	115	27	31	16	25	1.96
35505951--35506138	53	3.6	52	75	13	172	34	18	25	21	1.96
35505951--35506197	102	2.4	103	78	9	254	35	17	25	21	1.95
35514804--35514849	18	2.6	18	93	3	76	19	30	34	15	1.93
35515953--35516014	25	2.5	25	81	0	79	19	19	27	33	1.96
35519713--35519746	17	1.9	18	88	5	52	38	0	23	38	1.55
35522989--35523023	9	3.9	9	92	0	61	54	2	0	42	1.15
35523863--35523901	19	2.1	19	95	0	69	46	12	5	35	1.65
35527567--35527687	50	2.4	50	87	1	172	28	28	16	26	1.97
35527567--35527698	49	2.7	50	86	2	178	28	28	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35532705--35532929	49	4.5	49	84	3	297	29	26	18	25	1.98
35532705--35532936	101	2.3	98	85	4	304	29	26	18	25	1.98
35535700--35535870	43	4.0	43	72	15	165	30	26	18	24	1.98
35539723--35539777	20	3.0	18	80	12	58	78	1	9	10	1.05
35546631--35546726	45	2.2	43	81	7	120	34	27	15	22	1.95
35549600--35549769	45	3.7	47	77	17	169	27	29	21	21	1.99
35549600--35549769	93	1.8	93	94	1	306	27	29	21	21	1.99
35550190--35550245	29	1.9	29	88	0	85	30	23	8	37	1.85
35554921--35555018	27	3.5	28	90	2	135	26	13	28	31	1.94
35554949--35555031	27	3.0	27	87	5	96	30	12	25	32	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325