Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  323  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104291363--104291393
15
2.1
15
93
0
53
22
6
29
41
1.78
104294096--104294120
11
2.3
11
100
0
50
60
0
8
32
1.26
104296495--104296651
78
2.0
78
98
0
305
22
14
21
42
1.88
104299864--104299893
13
2.4
12
94
5
51
0
0
13
86
0.57
104303964--104304000
16
2.2
18
85
9
51
45
5
2
45
1.40
104310936--104311166
118
2.0
118
92
0
390
28
31
17
22
1.97
104312105--104312149
13
3.5
12
82
14
54
77
0
2
20
0.87
104312113--104312151
6
6.2
6
88
11
60
82
0
0
17
0.68
104318255--104318627
105
3.6
105
95
1
642
30
30
20
18
1.96
104322168--104322244
31
2.5
31
74
4
75
37
15
16
29
1.90
104326245--104326287
22
2.0
22
85
0
59
37
6
16
39
1.75
104329957--104330001
23
1.9
24
90
4
74
28
4
0
66
1.11
104329957--104330008
23
2.2
22
86
10
68
32
5
0
61
1.20
104330698--104330796
49
2.0
49
100
0
198
41
14
18
26
1.88
104333017--104333065
21
2.3
21
92
0
80
30
8
10
51
1.65
104333957--104333997
18
2.3
18
86
0
55
26
31
7
34
1.84
104334000--104334473
237
2.0
237
92
2
781
28
24
19
27
1.98
104337853--104337910
28
2.1
28
96
0
107
13
22
17
46
1.83
104342613--104342649
17
2.2
17
100
0
74
24
5
5
64
1.36
104344623--104344663
21
2.0
20
85
4
55
34
2
2
60
1.23
104344860--104344889
15
1.9
16
93
6
53
50
6
10
33
1.62
104346180--104346340
85
1.9
85
100
0
322
42
18
13
26
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104351176--104351215
21
1.9
21
89
0
62
37
0
0
62
0.95
104354204--104354291
30
2.9
29
73
20
74
37
4
7
50
1.52
104354963--104355010
23
2.1
23
84
3
62
22
8
8
60
1.52
104355245--104355307
31
2.0
31
100
0
126
36
3
25
34
1.72
104356037--104356088
24
2.2
24
89
0
77
55
9
1
32
1.43
104356801--104356847
19
2.5
19
83
16
62
40
0
0
59
0.97
104356801--104356855
5
11.2
5
83
16
71
41
0
0
58
0.98
104356801--104356855
24
2.2
24
90
9
85
41
0
0
58
0.98
104356864--104356959
40
2.3
40
89
3
147
63
8
28
0
1.23
104357671--104357727
30
1.9
30
85
3
80
47
3
17
31
1.65
104357937--104357968
13
2.5
13
94
0
55
31
0
12
56
1.37
104358063--104358304
50
4.7
50
84
5
272
26
23
29
20
1.99
104358063--104358312
100
2.4
103
86
7
339
26
23
29
21
1.99
104361314--104361365
24
2.2
24
89
0
77
55
9
1
32
1.43
104386175--104386216
20
2.1
20
100
0
84
50
9
11
28
1.70
104387651--104387836
73
2.5
73
97
0
354
40
24
6
28
1.79
104387837--104387883
3
15.7
3
100
0
94
68
0
0
31
0.90
104401431--104401519
42
2.1
42
93
0
151
50
14
6
28
1.68
104401544--104401580
19
2.0
18
94
5
65
43
16
5
35
1.71
104403244--104403429
73
2.5
73
99
0
363
27
6
24
40
1.80
104407642--104407667
3
8.7
3
100
0
52
30
0
0
69
0.89
104407668--104407853
73
2.5
73
99
0
363
27
6
24
40
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104425443--104425517
18
4.2
18
84
0
87
33
14
22
29
1.94
104431650--104431688
18
2.2
18
85
0
51
61
2
23
12
1.43
104438577--104438631
16
3.4
16
76
16
51
67
3
0
29
1.08
104440571--104440625
16
3.4
16
76
16
51
67
3
0
29
1.08
104445344--104445470
42
3.0
42
86
6
170
29
26
14
29
1.95
104445388--104445548
42
3.6
47
81
12
151
29
26
14
29
1.95
104445427--104445552
47
2.7
48
82
9
161
29
26
15
29
1.96
104445577--104445849
31
8.8
31
88
3
388
26
26
19
27
1.99
104445577--104445849
93
2.9
93
91
1
431
26
26
19
27
1.99
104454903--104454938
16
2.2
16
90
5
54
5
22
2
69
1.22
104466751--104466807
30
1.9
30
85
0
78
43
8
21
26
1.81
104467226--104467400
46
3.8
45
80
11
212
20
21
29
29
1.98
104467223--104467393
92
1.9
92
96
0
315
21
21
29
28
1.98
104484798--104484883
17
5.0
17
84
8
120
32
15
24
27
1.95
104484798--104484887
35
2.6
35
92
5
148
32
15
24
27
1.95
104490383--104490475
18
5.2
18
89
0
141
27
23
16
32
1.96
104490383--104490475
36
2.6
36
92
0
159
27
23
16
32
1.96
104494706--104494957
47
5.3
47
92
2
380
32
8
29
28
1.87
104502661--104502753
46
1.9
48
82
8
118
38
7
12
40
1.72
104527553--104527591
19
2.0
21
90
10
64
35
15
17
30
1.91
104529087--104529117
15
2.1
15
93
0
53
25
0
16
58
1.38
104536311--104536354
21
2.2
20
83
4
52
43
9
22
25
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104541693--104541740
22
2.3
20
82
10
60
70
4
4
20
1.21
104541693--104541741
21
2.3
22
86
6
66
71
4
4
20
1.19
104549087--104549854
125
6.1
126
87
1
1069
36
16
17
29
1.92
104552801--104553084
136
2.1
138
92
2
473
53
5
3
37
1.41
104553468--104553510
18
2.4
18
80
0
50
46
9
23
20
1.79
104555730--104555827
49
2.0
49
91
0
160
26
10
18
44
1.81
104555796--104555945
63
2.4
64
88
3
216
32
10
16
40
1.83
104561931--104561955
2
12.5
2
100
0
50
52
0
0
48
1.00
104571213--104571258
20
2.3
20
82
10
58
41
4
0
54
1.20
104586876--104586915
17
2.3
18
87
8
57
37
0
0
62
0.95
104590402--104590472
31
2.3
30
83
7
81
47
8
11
32
1.69
104593196--104593231
13
2.8
14
84
16
51
27
25
0
47
1.52
104593183--104593223
18
2.2
19
87
12
59
29
24
0
46
1.53
104593346--104593480
39
3.4
38
73
8
101
28
28
20
23
1.99
104593720--104593758
18
2.1
19
90
4
62
48
10
0
41
1.37
104595074--104595130
5
11.0
5
78
14
62
56
1
0
42
1.10
104595073--104595128
12
4.5
12
81
16
69
55
1
0
42
1.10
104595075--104595130
26
2.2
26
90
6
69
55
1
0
42
1.10
104598868--104599220
188
1.9
190
87
3
525
21
11
22
44
1.84
104599096--104599409
158
2.0
158
87
2
452
23
12
21
43
1.85
104606087--104606170
31
2.8
31
89
3
127
23
11
10
53
1.69
104611470--104611501
15
2.0
17
88
11
50
6
18
3
71
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104614834--104614922
9
9.6
9
85
7
124
42
21
11
24
1.85
104614934--104614996
20
3.0
20
86
9
74
23
3
0
73
0.98
104614941--104614988
6
7.5
6
84
11
60
20
2
0
77
0.88
104614940--104614986
14
3.5
14
82
11
71
21
2
0
76
0.89
104614941--104615011
32
2.2
31
82
9
81
23
2
1
71
1.07
104618198--104619073
438
2.0
438
99
0
1725
24
16
21
38
1.93
104621490--104621602
54
2.1
54
95
3
203
23
3
15
56
1.55
104624798--104624827
7
4.1
7
91
8
51
26
0
13
60
1.34
104624798--104624827
15
2.1
15
93
6
53
26
0
13
60
1.34
104627560--104627594
16
2.2
16
94
0
61
40
11
5
42
1.65
104635060--104635088
2
14.5
2
100
0
58
51
0
0
48
1.00
104641647--104642021
106
3.5
106
80
2
412
33
17
18
30
1.94
104652024--104652106
31
2.7
31
92
1
132
34
9
9
45
1.70
104654799--104654857
29
2.0
31
80
12
70
44
8
1
45
1.44
104665672--104665696
13
1.9
13
100
0
50
24
0
8
68
1.16
104678840--104679088
50
4.8
50
85
4
284
20
29
24
26
1.99
104678839--104679088
100
2.4
104
88
6
357
20
29
24
26
1.99
104679183--104679214
13
2.5
13
94
0
55
56
12
0
31
1.37
104679426--104679483
30
1.9
30
89
0
89
31
24
3
41
1.71
104680045--104680123
2
43.5
2
69
26
52
51
3
0
44
1.19
104681995--104682022
13
2.2
13
100
0
56
46
25
7
21
1.76
104682448--104682472
12
2.1
12
100
0
50
40
12
0
48
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104684456--104684704
50
4.8
50
84
4
275
20
29
23
26
1.99
104684455--104684704
100
2.4
104
87
6
348
21
29
23
26
1.99
104684799--104684830
13
2.5
13
94
0
55
56
12
0
31
1.37
104685042--104685099
30
1.9
30
89
0
89
31
24
3
41
1.71
104685661--104685744
2
46.5
2
69
27
55
52
3
0
44
1.18
104685661--104685744
9
9.3
10
68
27
55
52
3
0
44
1.18
104686920--104686965
23
2.0
23
82
0
56
52
4
2
41
1.33
104686980--104687016
19
2.0
18
89
5
56
56
0
2
40
1.13
104714807--104714854
25
1.9
25
91
0
78
37
8
16
37
1.79
104714806--104714862
25
2.2
25
81
3
69
38
7
15
38
1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325