genome.fa.s3.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  155  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49625737--49625900	48	3.5	48	81	6	183	28	19	26	25	1.99
49630822--49630874	26	2.0	26	88	0	79	28	33	18	18	1.95
49630834--49630982	69	2.1	70	88	4	221	30	28	16	23	1.96
49630995--49631045	26	2.0	26	96	0	93	29	35	23	11	1.90
49630902--49631123	103	2.2	104	91	3	360	31	31	18	18	1.95
49631452--49631515	30	2.2	29	81	10	76	29	28	6	35	1.82
49631459--49631515	30	1.9	30	85	3	80	29	24	7	38	1.82
49632632--49632681	19	2.6	19	81	12	59	18	10	0	72	1.12
49637049--49637208	26	6.2	26	88	0	248	33	8	22	35	1.84
49637049--49637208	52	3.1	52	94	0	275	33	8	22	35	1.84
49638817--49638957	27	5.2	27	81	8	153	18	22	22	36	1.95
49638817--49638933	54	2.2	54	96	0	216	16	23	24	35	1.94
49638817--49638957	54	2.6	54	87	4	187	18	22	22	36	1.95
49649569--49649664	27	3.6	27	89	0	138	34	18	18	28	1.95
49649649--49649905	27	9.6	27	78	9	107	41	19	8	31	1.80
49649569--49649693	54	2.3	53	79	6	135	34	19	16	29	1.94
49649649--49649914	54	4.9	55	75	11	196	40	18	8	32	1.81
49649649--49649914	81	3.3	81	76	9	215	40	18	8	32	1.81
49649728--49649907	27	6.7	27	82	9	156	42	19	7	30	1.79
49649807--49649964	27	5.8	28	75	14	100	40	17	10	31	1.84
49650227--49650305	41	1.9	41	94	0	140	22	21	29	26	1.99
49650876--49650934	27	2.2	26	82	8	66	25	18	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49664124--49664156	14	2.2	16	89	10	52	33	6	6	54	1.50
49680237--49680266	13	2.3	13	94	0	51	20	33	33	13	1.91
49687357--49687404	25	1.9	25	95	0	87	14	22	12	50	1.77
49687383--49687412	15	2.0	15	100	0	60	20	20	6	53	1.67
49692896--49692996	43	2.3	43	89	0	148	30	21	11	35	1.90
49701401--49701461	30	2.0	30	83	0	77	32	22	6	37	1.80
49703168--49703339	59	2.9	59	90	0	254	16	22	22	39	1.92
49703168--49703354	39	4.7	40	84	2	243	16	22	22	37	1.93
49703173--49703354	79	2.3	79	88	1	267	16	23	23	36	1.94
49703168--49703339	20	8.7	20	87	2	240	16	22	22	39	1.92
49704025--49704122	24	4.0	24	91	1	160	35	5	37	21	1.76
49705511--49705613	27	3.9	25	80	11	107	18	23	20	37	1.94
49711542--49711615	24	3.0	24	90	2	121	36	5	37	20	1.76
49712973--49713086	27	4.2	27	88	4	142	16	24	22	35	1.95
49712973--49713106	27	5.0	26	88	4	133	17	24	20	37	1.94
49717033--49717069	16	2.3	16	90	9	58	54	16	21	8	1.68
49717788--49717965	20	8.9	20	80	3	180	17	21	22	38	1.93
49717788--49717958	39	4.3	39	81	3	153	17	21	22	38	1.93
49717795--49717965	59	2.9	59	81	3	173	16	22	23	36	1.94
49723372--49723418	24	2.0	24	87	8	69	25	27	19	27	1.99
49729548--49729593	21	2.2	20	84	3	56	21	34	15	28	1.94
49731700--49731877	43	4.2	42	78	9	164	29	13	23	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49734756--49735159	47	8.6	47	92	2	639	31	9	30	28	1.88
49734756--49735159	143	2.9	141	91	2	639	31	9	30	28	1.88
49734756--49735159	190	2.1	188	91	1	639	31	9	30	28	1.88
49736595--49737017	40	10.6	40	91	1	616	24	21	27	25	1.99
49740962--49741316	47	7.6	47	93	1	552	32	9	29	28	1.88
49749405--49749723	96	3.3	96	79	1	318	23	29	19	27	1.98
49749409--49749735	144	2.3	144	83	3	390	24	29	18	27	1.98
49749409--49749723	48	6.6	48	75	5	235	23	29	19	27	1.98
49750458--49750536	31	2.5	31	93	2	131	27	27	17	26	1.98
49750758--49750929	26	6.7	26	87	0	240	26	23	22	27	2.00
49750760--49750929	52	3.3	51	91	5	281	27	23	22	27	1.99
49751717--49751793	27	2.9	27	81	9	86	22	23	19	35	1.96
49751894--49752144	27	9.4	25	73	13	155	30	7	20	40	1.81
49751924--49752130	54	3.9	53	79	6	229	29	7	20	42	1.79
49751924--49752129	81	2.6	80	87	3	288	30	7	20	41	1.79
49752108--49752240	54	2.4	55	81	1	169	39	9	20	31	1.83
49752123--49752226	27	3.8	27	89	1	145	44	9	19	26	1.81
49754473--49754733	40	6.6	40	92	1	393	26	23	27	22	2.00
49757298--49757355	29	2.0	29	100	0	116	27	27	10	34	1.89
49758962--49758986	13	1.9	13	100	0	50	40	8	16	36	1.77
49763867--49764251	193	2.0	192	96	0	707	30	24	22	22	1.99
49768811--49768908	45	2.2	45	89	3	146	22	14	25	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49775630--49775670	21	2.0	21	85	9	57	29	2	12	56	1.49
49780992--49781032	22	1.9	22	95	5	75	17	24	43	14	1.86
49782247--49782405	46	3.5	45	85	9	182	23	30	19	27	1.98
49790377--49790417	20	2.1	20	86	4	57	39	2	9	48	1.49
49790488--49790522	18	2.0	18	88	5	54	28	14	20	37	1.91
49791595--49791691	29	3.4	28	87	9	126	27	27	16	27	1.97
49800085--49800149	18	3.6	17	80	15	69	13	38	3	44	1.60
49804684--49804708	11	2.3	11	100	0	50	32	0	16	52	1.44
49805671--49805724	27	2.0	27	85	0	72	38	14	5	40	1.70
49806022--49806079	30	1.9	30	85	3	80	34	20	5	39	1.75
49811497--49811550	27	2.0	27	85	0	72	38	14	5	40	1.70
49811848--49811904	30	1.9	30	92	0	96	31	21	7	40	1.80
49816845--49816992	51	3.0	50	82	4	174	31	25	18	25	1.98
49817245--49817301	27	2.1	27	83	6	71	40	14	5	40	1.68
49817579--49817798	46	4.7	47	79	8	209	30	19	27	22	1.98
49817584--49817798	93	2.3	95	82	10	257	30	19	27	22	1.98
49821566--49821748	78	2.3	78	93	0	321	30	19	26	24	1.98
49821566--49821748	39	4.7	39	89	2	287	30	19	26	24	1.98
49831436--49831747	47	6.6	47	91	2	464	32	8	29	29	1.87
49831436--49831747	96	3.3	94	88	5	439	32	8	29	29	1.87
49833918--49834103	78	2.4	78	94	0	327	29	19	26	24	1.99
49833918--49834103	39	4.8	39	89	0	291	29	19	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49838706--49838826	39	3.1	39	95	0	215	23	30	24	21	1.99
49840714--49840931	40	5.5	40	82	4	230	24	22	27	25	2.00
49846654--49846729	38	2.0	38	94	0	134	31	21	15	31	1.94
49848923--49849071	42	3.5	43	82	6	160	26	18	26	28	1.98
49859842--49859987	43	3.4	43	87	4	188	32	16	23	28	1.96
49862928--49862980	21	2.6	21	85	8	65	60	7	1	30	1.35
49862948--49862990	21	2.0	21	86	0	59	58	6	2	32	1.38
49862963--49863014	17	2.9	17	88	5	68	63	3	5	26	1.34
49863072--49863176	42	2.5	42	80	10	115	65	0	3	29	1.16
49863101--49863147	16	2.8	17	75	15	53	65	0	4	29	1.11
49863076--49863147	33	2.2	33	85	12	94	65	0	4	30	1.12
49863794--49863865	28	2.6	28	80	8	78	37	8	1	52	1.40
49863849--49863893	19	2.3	20	84	3	65	42	2	2	53	1.25
49863859--49863906	9	5.2	9	85	5	51	47	0	2	50	1.12
49864035--49864093	30	2.0	30	100	0	118	42	13	10	33	1.78
49869958--49870252	77	3.7	77	81	8	256	29	13	11	45	1.79
49869976--49870269	78	3.7	77	80	9	283	27	12	11	47	1.77
49875929--49875959	16	2.0	16	93	6	55	32	0	45	22	1.53
49876045--49876098	16	3.2	16	72	23	56	27	12	20	38	1.89
49876053--49876109	17	3.3	17	71	22	55	24	10	26	38	1.88
49876028--49876185	35	4.5	35	79	1	156	21	10	27	40	1.85
49885220--49885268	21	2.5	19	78	12	53	51	14	2	32	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49886391--49886429	20	2.0	20	94	0	69	48	0	10	41	1.37
49886976--49887125	57	2.6	58	77	7	153	26	18	23	32	1.97
49888546--49888715	93	1.8	93	92	0	286	30	28	19	21	1.98
49888537--49888712	46	3.8	46	77	10	178	31	28	18	21	1.97
49888588--49888731	46	3.1	45	72	21	127	29	29	18	22	1.97
49894354--49894399	22	2.1	22	100	0	92	41	13	21	23	1.88
49916980--49917155	46	3.8	46	78	7	212	22	20	27	29	1.99
49916978--49917146	93	1.8	93	94	0	302	23	20	27	28	1.99
49921297--49921812	47	10.9	47	95	0	879	31	8	30	29	1.88
49921931--49922009	37	2.1	37	90	0	122	24	18	31	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325