genome.fa.s3.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  159  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50953954--50954086	28	5.2	27	61	25	74	23	18	29	28	1.98
50953906--50954130	49	4.5	49	85	3	281	24	19	28	28	1.98
50953899--50954137	99	2.4	100	85	3	313	23	19	28	28	1.98
50962194--50962263	28	2.5	28	86	4	97	28	14	27	30	1.95
50969988--50970050	28	2.2	28	83	5	74	31	15	22	30	1.95
50973484--50973577	40	2.3	40	81	5	109	30	17	25	26	1.97
50986779--50986946	40	4.2	40	83	3	223	23	22	27	26	2.00
50987183--50987224	22	1.9	22	85	9	59	30	9	14	45	1.77
50994849--50994989	40	3.5	40	85	0	185	25	24	24	25	2.00
51005470--51005713	40	6.1	40	89	1	330	22	22	27	26	1.99
51010484--51010656	79	2.2	79	81	2	195	28	26	20	23	1.99
51010557--51010662	40	2.7	40	95	1	187	31	24	20	23	1.98
51016866--51017123	40	6.5	40	86	4	326	22	22	27	26	1.99
51020842--51021045	55	3.8	54	80	5	220	34	16	25	23	1.95
51027698--51027897	53	3.8	52	83	6	210	36	16	25	22	1.94
51031630--51031841	40	5.3	40	86	3	241	24	20	26	28	1.99
51034644--51034747	27	3.9	27	80	7	104	17	23	21	38	1.93
51034644--51034756	54	2.1	54	85	6	149	15	22	22	39	1.91
51042489--51042601	27	4.2	27	77	7	113	17	23	21	38	1.94
51042489--51042601	54	2.1	54	83	3	138	17	23	21	38	1.94
51053301--51053398	39	2.3	43	83	13	125	30	25	19	24	1.98
51053370--51053452	30	2.8	30	98	1	159	34	22	15	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51057601--51057823	46	4.7	46	77	7	168	27	20	28	23	1.99
51057691--51057824	49	2.7	49	81	5	162	26	19	29	24	1.98
51058380--51058424	22	2.0	22	100	0	90	48	8	13	28	1.72
51066958--51067134	27	6.5	27	83	3	167	29	27	15	27	1.96
51074993--51075170	27	6.6	27	82	3	115	29	28	15	26	1.96
51075014--51075169	82	1.9	81	88	3	233	29	28	15	26	1.96
51074993--51075169	54	3.3	54	81	6	205	29	28	15	26	1.96
51082711--51082736	9	2.9	9	100	0	52	11	0	53	34	1.37
51097583--51097820	47	5.1	47	93	0	377	26	28	10	33	1.90
51097630--51097705	22	3.3	22	65	28	59	25	30	13	31	1.93
51097605--51097682	25	3.2	25	64	29	69	29	29	10	30	1.90
51101331--51101474	28	5.1	29	82	1	159	31	29	13	26	1.94
51101336--51101474	57	2.4	58	85	3	176	30	30	13	25	1.94
51104560--51104587	8	3.5	8	100	0	56	21	25	10	42	1.85
51104552--51104597	16	2.9	16	81	12	67	19	23	13	43	1.86
51108699--51108749	26	2.0	25	85	14	68	39	3	27	29	1.74
51109244--51109360	42	2.8	41	77	3	119	30	15	23	29	1.95
51114729--51114768	21	2.0	21	85	5	55	22	30	40	7	1.81
51115934--51116166	48	4.8	50	74	13	173	24	31	18	25	1.98
51116144--51116303	46	3.5	47	81	9	154	24	27	20	28	1.99
51116942--51116981	21	1.9	21	84	0	53	70	5	15	10	1.32
51118422--51118571	28	5.4	28	91	2	214	25	12	28	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51131247--51131578	47	7.1	47	93	0	513	33	10	28	26	1.90
51131452--51131523	22	3.0	25	65	19	62	36	9	26	27	1.88
51131552--51131780	46	5.0	46	94	1	370	34	10	31	24	1.88
51135734--51135893	42	3.8	42	78	8	171	32	14	23	30	1.94
51151466--51151650	40	4.6	39	80	6	185	23	22	27	26	2.00
51151521--51151673	79	1.9	79	83	7	195	25	19	27	27	1.99
51151513--51151683	79	2.2	78	79	10	186	26	19	26	26	1.99
51159358--51159542	79	2.3	81	84	7	236	24	22	27	25	2.00
51159359--51159542	40	4.6	40	83	9	216	24	22	27	25	2.00
51159411--51159575	79	2.1	79	84	6	210	26	21	27	25	1.99
51163738--51164095	49	7.6	49	73	11	187	25	27	18	28	1.98
51163738--51164096	92	3.8	91	78	7	249	25	27	18	28	1.98
51163927--51164098	46	3.7	45	76	12	161	23	27	20	28	1.99
51167823--51167926	37	2.8	37	89	0	163	26	29	19	24	1.98
51168098--51168544	48	9.4	48	92	2	717	30	27	8	34	1.86
51168352--51168528	90	2.0	90	97	0	336	32	27	6	33	1.82
51172758--51172831	37	2.0	37	97	0	139	32	9	32	25	1.88
51181697--51181873	48	3.7	48	76	1	149	28	22	18	31	1.97
51183492--51183539	22	2.2	22	92	0	78	56	14	8	20	1.64
51190519--51190550	16	2.0	16	93	0	55	34	18	0	46	1.49
51190761--51191087	50	6.5	50	81	4	300	31	26	15	26	1.95
51190759--51191087	101	3.3	100	80	1	363	31	26	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51196914--51197240	180	1.8	180	88	4	498	33	18	8	39	1.80
51197864--51197900	19	1.9	19	100	0	74	32	27	18	21	1.97
51197814--51197949	69	2.0	69	91	0	218	29	25	18	26	1.98
51197883--51198248	50	7.2	50	78	5	290	32	24	16	26	1.96
51197883--51198204	151	2.1	152	88	1	468	31	25	17	26	1.97
51201348--51201398	24	2.1	24	88	0	75	7	17	19	54	1.67
51207337--51207445	43	2.6	42	79	5	121	26	18	25	29	1.98
51208989--51209043	26	2.1	26	100	0	110	40	10	23	25	1.87
51209760--51209859	49	2.0	49	100	0	200	25	26	16	33	1.96
51222226--51222289	31	2.1	31	90	0	101	25	23	14	37	1.92
51222482--51222675	50	4.0	49	81	7	175	28	21	20	28	1.98
51222509--51222673	25	6.8	24	84	4	190	30	21	20	27	1.98
51222509--51222674	50	3.4	48	84	5	210	30	21	20	27	1.98
51222733--51222790	9	6.0	9	73	15	53	36	20	8	34	1.84
51222721--51222789	20	3.5	20	93	0	120	33	21	10	34	1.87
51222726--51222780	11	5.4	11	70	16	55	30	20	12	36	1.90
51224033--51224110	27	2.9	27	79	11	88	21	20	21	35	1.96
51224151--51224565	27	15.3	27	74	8	152	34	8	18	38	1.82
51224241--51224380	54	2.6	54	82	4	183	31	7	21	40	1.80
51224211--51224365	81	1.9	81	86	5	224	30	8	20	40	1.82
51224231--51224407	81	2.2	81	77	6	187	33	7	20	37	1.81
51226063--51226169	44	2.5	43	80	7	110	34	22	18	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51234387--51234543	43	3.7	43	79	13	164	33	26	18	21	1.96
51238976--51239200	40	5.7	40	86	5	269	25	28	22	24	2.00
51238978--51239200	119	1.9	120	83	6	292	25	27	22	24	2.00
51240328--51240446	55	2.1	56	98	1	231	22	23	9	44	1.81
51246881--51247100	40	5.7	40	82	8	258	25	28	21	25	1.99
51246881--51247100	79	2.8	78	83	7	268	25	28	21	25	1.99
51248223--51248341	55	2.1	56	98	1	231	22	23	9	44	1.81
51257527--51257694	40	4.3	40	87	6	222	26	27	20	25	1.99
51257527--51257694	77	2.2	78	85	7	218	26	27	20	25	1.99
51258856--51258970	54	2.1	57	88	11	186	24	22	10	42	1.85
51263491--51263740	40	6.3	40	87	5	319	23	20	27	29	1.98
51267725--51267925	80	2.5	80	88	3	271	22	23	27	25	2.00
51267722--51267904	40	4.6	40	93	1	287	21	24	27	25	1.99
51271127--51271238	27	4.1	27	80	12	122	15	24	23	37	1.93
51271124--51271238	54	2.1	54	85	3	151	14	24	23	37	1.93
51273799--51273974	46	3.8	45	78	10	185	21	20	28	29	1.98
51273795--51273966	93	1.8	93	91	0	281	20	20	29	28	1.98
51279394--51279524	42	3.2	42	67	14	110	30	16	23	29	1.96
51282768--51282918	43	3.5	42	77	7	126	32	24	15	27	1.95
51282792--51282943	43	3.5	43	74	8	121	32	23	14	29	1.94
51286892--51287064	46	3.7	46	78	10	172	23	20	26	30	1.98
51286889--51287059	93	1.8	93	88	0	261	22	20	26	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51288573--51288829	40	6.5	40	84	4	292	26	28	22	22	1.99
51288573--51288829	79	3.2	79	86	4	324	26	28	22	22	1.99
51297738--51297921	40	4.7	40	82	7	216	25	27	22	25	2.00
51297738--51297921	79	2.3	80	83	6	214	25	27	22	25	2.00
51306864--51307047	79	2.3	81	83	8	227	25	27	22	24	2.00
51306845--51307047	39	5.1	40	81	9	229	24	27	22	25	2.00
51311952--51311995	20	2.2	20	84	12	54	56	0	0	43	0.99
51315905--51316122	40	5.5	40	92	2	341	27	26	22	24	2.00
51323604--51323667	31	2.1	31	100	0	128	35	9	21	32	1.86
51327651--51327798	43	3.4	43	76	9	158	33	22	15	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325