Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  276  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90186051--90186081
16
1.9
16
93
0
53
54
3
0
41
1.16
90187583--90187864
146
1.9
147
92
2
478
32
9
17
40
1.82
90191648--90191684
18
2.1
18
100
0
74
37
21
16
24
1.93
90191852--90191939
20
4.7
20
70
18
80
67
6
0
26
1.16
90191852--90191967
55
2.1
55
95
3
207
65
9
0
25
1.22
90191852--90191936
25
3.2
25
67
20
73
68
7
0
24
1.14
90192705--90192767
31
2.0
31
82
11
76
33
1
0
65
1.03
90203723--90203769
23
2.1
22
84
11
60
4
19
0
76
0.95
90203752--90203790
19
2.0
21
90
10
64
10
17
0
71
1.12
90203739--90203780
16
2.5
17
82
14
52
7
16
0
76
1.00
90203732--90203790
19
3.1
19
79
16
61
8
18
0
72
1.09
90205383--90205463
11
6.8
12
78
12
53
62
1
3
32
1.20
90205367--90205455
39
2.3
39
82
7
110
62
1
4
31
1.22
90205355--90205464
7
16.3
7
68
14
61
62
1
3
31
1.23
90205427--90205463
11
3.5
11
88
7
58
67
0
0
32
0.91
90205404--90205463
21
2.8
22
82
7
70
66
0
3
30
1.07
90205472--90205532
26
2.3
26
83
10
72
40
1
4
52
1.33
90205493--90205543
26
2.0
27
81
11
63
45
1
5
47
1.38
90209066--90209131
20
3.3
20
72
14
55
34
22
30
12
1.91
90218105--90218217
45
2.5
45
80
5
122
23
21
11
43
1.85
90219178--90219227
15
3.3
15
81
10
66
34
22
8
36
1.83
90219170--90219227
30
1.9
30
96
0
107
34
22
8
34
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90232293--90232388
34
2.8
34
81
7
115
27
21
26
25
2.00
90248707--90248782
34
2.2
34
88
0
107
27
22
23
26
1.99
90260237--90260397
46
3.5
45
79
5
160
30
18
26
25
1.98
90260424--90260553
49
2.7
49
78
7
131
29
20
26
23
1.99
90274297--90274459
46
3.6
45
84
8
206
33
18
25
22
1.97
90274499--90274609
49
2.3
49
81
6
127
30
22
26
20
1.98
90277226--90277276
25
2.0
25
96
0
93
23
31
7
37
1.83
90279111--90279162
18
2.7
19
88
5
70
53
3
7
34
1.48
90279185--90279223
5
7.8
5
100
0
78
41
0
0
58
0.98
90287395--90287577
79
2.3
81
83
9
225
25
27
22
24
2.00
90287374--90287577
40
5.1
40
81
8
229
25
27
22
25
2.00
90292825--90292889
30
2.2
30
91
0
103
21
32
23
23
1.98
90294612--90294698
43
2.0
43
100
0
174
44
20
2
32
1.64
90296952--90297003
18
2.7
19
88
5
70
53
3
7
34
1.48
90297128--90297170
20
2.2
20
87
8
61
74
0
25
0
0.82
90297087--90297155
36
1.9
36
82
5
86
69
0
21
8
1.15
90297130--90297172
22
2.0
21
82
13
52
72
0
27
0
0.85
90297098--90297169
12
5.9
12
70
16
51
69
0
25
5
1.10
90298035--90298167
40
3.4
40
73
7
128
26
16
24
33
1.96
90299338--90299412
6
12.0
6
76
12
62
9
13
1
76
1.09
90299362--90299412
19
2.8
18
82
11
61
7
13
1
76
1.09
90301376--90301438
24
2.7
23
82
7
72
31
28
15
23
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90306686--90306796
55
2.0
55
98
0
213
24
20
16
38
1.92
90307742--90307766
13
1.9
13
100
0
50
56
0
0
44
0.99
90307978--90308057
3
27.7
3
72
16
62
35
0
5
60
1.19
90308305--90308374
33
2.1
33
84
10
90
41
0
5
52
1.25
90308316--90308396
33
2.5
33
82
11
87
44
1
7
46
1.39
90308618--90308661
12
3.6
12
81
3
52
72
0
25
2
0.96
90309647--90309671
12
2.1
12
100
0
50
16
24
20
40
1.91
90309649--90309755
45
2.4
45
88
0
160
21
17
18
42
1.90
90312138--90312177
20
2.0
20
100
0
80
25
15
20
40
1.90
90316109--90316202
33
2.6
37
74
22
92
43
1
4
51
1.28
90316131--90316211
33
2.5
33
82
11
87
46
0
6
46
1.27
90316343--90316392
22
2.4
20
81
12
64
76
4
6
14
1.13
90316431--90316474
12
3.6
12
81
3
52
72
0
22
4
1.02
90317171--90317249
40
2.0
40
82
0
95
35
8
16
39
1.80
90317459--90317483
12
2.1
12
100
0
50
16
24
20
40
1.91
90317462--90317567
45
2.4
45
87
3
151
22
17
18
40
1.91
90319437--90319493
3
18.7
3
96
3
105
33
0
0
66
0.92
90322212--90322269
8
6.7
9
75
13
50
62
0
1
36
1.06
90322227--90322277
17
2.9
17
82
2
57
58
1
1
37
1.20
90326260--90326667
204
2.0
201
83
4
507
23
19
13
43
1.87
90330382--90330414
17
1.9
18
88
11
52
42
9
0
48
1.35
90340553--90340603
21
2.7
18
83
16
75
43
21
5
29
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90340560--90340604
21
2.1
21
100
0
90
44
24
4
26
1.72
90348064--90348106
18
2.4
19
80
11
54
34
16
23
25
1.95
90348995--90349050
29
1.9
29
88
0
85
35
8
17
37
1.82
90350057--90350180
63
2.0
64
86
1
178
40
17
11
30
1.85
90362553--90362595
22
1.9
23
85
4
61
41
23
13
20
1.88
90364898--90364938
12
3.5
12
93
3
66
17
0
9
73
1.09
90396227--90396256
14
2.1
15
93
6
53
13
10
13
63
1.52
90415789--90415841
26
2.1
24
82
6
61
15
5
1
77
1.04
90422719--90422925
45
4.6
45
82
5
249
20
18
14
45
1.85
90422719--90422925
90
2.3
90
84
3
274
20
18
14
45
1.85
90422897--90423020
45
2.8
45
92
0
203
16
20
19
43
1.88
90422719--90422970
90
2.8
89
81
5
251
20
18
15
45
1.86
90426097--90426142
12
3.9
12
86
13
60
19
4
0
76
0.96
90426103--90426140
17
2.2
17
90
9
60
18
2
0
78
0.86
90426100--90426154
7
9.0
6
90
6
60
21
1
0
76
0.88
90426101--90426185
13
6.8
13
77
9
63
27
1
2
69
1.08
90426125--90426185
7
9.1
7
78
8
65
29
0
3
67
1.07
90426100--90426182
20
4.4
19
74
15
66
26
1
2
69
1.08
90426553--90426614
31
2.0
32
87
3
90
41
9
11
37
1.74
90441231--90441273
20
2.0
22
86
8
63
55
11
30
2
1.48
90443031--90443096
30
2.2
30
91
0
114
10
25
33
30
1.90
90445703--90445808
54
2.0
53
90
5
169
44
12
8
34
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90450631--90450667
18
2.1
17
90
5
56
27
5
27
40
1.78
90459878--90459933
18
3.5
15
82
15
60
39
10
14
35
1.81
90459857--90459947
19
4.9
19
89
8
143
37
10
14
37
1.81
90459926--90459970
23
2.0
22
82
4
54
40
4
17
37
1.70
90468649--90468948
78
3.9
77
88
3
426
33
17
25
23
1.96
90469029--90469323
78
3.8
78
89
1
439
32
18
23
25
1.97
90469353--90469522
89
1.9
89
88
0
259
29
14
28
27
1.95
90469339--90469530
45
4.3
45
84
1
242
31
15
27
25
1.95
90469886--90469922
19
1.9
19
88
0
56
35
8
16
40
1.78
90469901--90469945
23
2.0
23
86
4
65
37
6
17
37
1.76
90475689--90475726
9
3.5
11
86
13
53
10
0
28
60
1.30
90485246--90485293
17
2.8
17
83
3
60
39
8
10
41
1.69
90486707--90486882
46
3.8
46
79
12
216
20
21
29
28
1.98
90486704--90486875
93
1.8
93
96
0
317
20
21
29
27
1.98
90493169--90493283
45
2.6
45
92
1
187
20
20
29
28
1.98
90501184--90501313
45
2.9
45
89
2
183
23
21
29
26
1.99
90503886--90504020
60
2.2
60
82
11
152
28
22
18
29
1.98
90510427--90510476
25
2.0
25
92
0
82
16
22
32
30
1.95
90510350--90510707
100
3.6
100
87
8
507
20
20
28
31
1.97
90510624--90510676
26
2.0
26
96
0
97
15
22
33
28
1.94
90521074--90521220
46
3.2
46
80
3
168
25
30
20
23
1.98
90525444--90525484
5
8.4
5
83
5
57
36
0
21
41
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90527161--90527194
16
2.1
17
88
5
52
55
5
8
29
1.54
90527339--90527491
68
2.2
68
91
0
252
20
27
23
28
1.99
90535129--90535347
45
4.9
45
90
5
306
22
22
29
25
1.99
90536519--90536602
43
2.0
43
90
2
134
23
23
3
48
1.66
90544283--90544330
23
2.1
23
84
7
62
35
8
12
43
1.73
90554346--90554401
26
2.2
26
100
0
112
30
7
26
35
1.83
90559332--90559428
34
2.9
34
86
4
133
43
0
15
41
1.47
90559312--90559428
34
3.4
33
81
5
126
42
0
15
41
1.47
90559532--90560030
125
4.0
125
82
2
554
38
14
16
30
1.88
90559541--90560033
251
2.0
251
84
2
641
37
14
17
30
1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325