Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  129  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41272939--41273038
41
2.4
41
89
0
155
20
32
16
32
1.94
41275579--41275754
56
3.1
56
96
0
325
44
9
22
23
1.81
41276883--41277068
40
4.7
40
83
7
227
23
22
28
25
1.99
41276884--41277066
79
2.3
81
83
8
223
24
22
28
24
2.00
41276936--41277101
80
2.1
79
83
7
203
25
21
28
25
1.99
41283555--41283730
56
3.1
56
99
0
343
44
9
23
22
1.81
41284856--41285038
79
2.3
81
84
7
232
24
22
27
25
2.00
41284857--41285040
40
4.6
40
83
9
216
23
22
28
25
2.00
41284909--41285073
79
2.1
79
84
6
210
25
21
27
25
1.99
41288431--41288558
66
1.9
66
96
0
238
27
4
23
44
1.73
41289184--41289254
27
2.6
27
84
0
97
32
8
22
36
1.84
41289424--41289517
27
3.5
27
89
0
134
45
15
18
20
1.85
41290548--41290601
23
2.2
24
81
12
58
40
7
7
44
1.60
41293931--41293963
16
2.0
17
88
5
50
66
0
0
33
0.92
41294042--41294103
26
2.3
26
83
10
72
53
9
0
37
1.34
41294070--41294126
26
2.2
26
81
6
62
54
5
0
40
1.23
41294590--41294632
14
3.0
14
80
12
52
60
2
0
37
1.10
41294726--41294751
7
3.7
7
100
0
52
42
0
0
57
0.98
41294384--41294841
240
1.9
240
81
7
554
42
7
10
39
1.67
41298864--41299127
47
5.7
46
78
10
209
28
18
28
23
1.98
41298901--41299129
47
4.9
48
80
8
258
27
18
30
23
1.98
41298864--41299129
140
1.9
141
83
6
353
28
19
28
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41306148--41306242
27
3.5
28
86
4
79
30
18
26
24
1.98
41306173--41306326
28
5.6
27
77
11
152
28
13
27
29
1.94
41313671--41313825
28
5.6
27
75
10
127
27
14
28
30
1.95
41316735--41317007
48
5.8
47
79
6
236
30
17
30
22
1.97
41316738--41317008
47
5.8
46
77
10
162
29
17
29
22
1.97
41317917--41317972
28
2.0
28
89
3
85
12
23
42
21
1.86
41323101--41323272
46
3.7
46
82
7
190
20
29
20
29
1.98
41326610--41326701
35
2.6
35
98
0
175
34
25
9
30
1.88
41328149--41328174
7
3.7
7
100
0
52
0
15
15
69
1.20
41328947--41329080
64
2.1
64
95
0
241
38
11
4
46
1.60
41329128--41329198
24
3.0
24
83
8
99
28
16
8
46
1.76
41329372--41329442
29
2.4
29
95
0
124
43
1
0
54
1.08
41329378--41329426
16
3.2
16
68
26
52
42
2
0
55
1.11
41329554--41329928
9
42.4
9
81
4
424
48
11
1
38
1.51
41329554--41329901
44
8.3
44
82
12
410
48
11
2
38
1.51
41329572--41329901
35
9.4
35
87
3
405
48
10
2
38
1.50
41331797--41331821
12
2.1
12
100
0
50
32
8
28
32
1.86
41335136--41335164
14
2.1
14
93
6
51
34
0
6
58
1.25
41335578--41335653
21
3.6
21
80
7
91
31
18
48
1
1.56
41335885--41335970
31
2.7
32
78
3
93
16
6
19
56
1.62
41337201--41337265
19
3.2
19
77
16
60
55
4
0
40
1.21
41337247--41337289
17
2.4
18
88
11
63
53
0
0
46
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41338148--41338232
41
2.1
41
93
4
145
44
9
10
35
1.71
41338981--41339006
2
13.0
2
100
0
52
50
0
50
0
1.00
41343169--41343218
20
2.5
20
86
0
64
44
0
14
42
1.44
41350015--41350078
20
3.2
20
67
20
62
43
9
7
39
1.66
41350014--41350095
39
2.1
38
95
2
146
43
9
8
37
1.68
41350751--41350784
8
4.2
8
92
0
50
35
5
23
35
1.79
41356695--41356868
46
3.8
46
76
13
176
29
27
20
22
1.99
41360740--41360832
5
18.8
5
89
6
145
59
18
1
21
1.44
41364160--41364306
40
3.7
40
88
0
186
30
18
23
27
1.97
41364383--41364487
41
2.6
41
86
1
122
26
18
26
28
1.98
41364404--41364487
41
2.0
41
90
0
132
29
17
23
28
1.97
41364804--41364852
14
3.5
14
80
0
62
22
0
32
44
1.53
41364863--41364915
22
2.5
21
84
3
70
26
0
26
47
1.53
41364868--41364902
15
2.4
14
86
9
52
22
0
31
45
1.53
41364863--41364923
21
2.8
22
82
2
61
24
0
29
45
1.53
41365640--41365689
13
3.6
14
81
8
57
62
2
0
36
1.07
41366748--41366780
12
2.7
12
95
4
57
12
9
6
72
1.26
41370204--41370392
84
2.2
85
84
1
245
21
15
29
33
1.94
41370205--41370392
42
4.4
43
81
2
218
21
15
29
33
1.94
41371310--41371366
24
2.4
24
75
13
64
42
5
14
38
1.68
41371315--41371360
24
1.9
24
86
8
67
41
6
17
34
1.75
41373015--41373055
22
1.9
22
85
5
57
36
4
2
56
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41380484--41380523
17
2.3
18
86
4
55
37
10
12
40
1.77
41384651--41384679
14
2.1
14
100
0
58
20
10
34
34
1.87
41403679--41403860
6
30.2
6
96
3
339
33
0
16
50
1.46
41407770--41407801
15
2.1
15
100
0
64
40
25
6
28
1.79
41412912--41412945
16
2.1
16
89
10
52
64
0
5
29
1.17
41414033--41414085
24
2.2
24
96
3
99
33
13
0
52
1.40
41414718--41414746
14
2.0
15
93
6
51
31
0
0
68
0.89
41416600--41416726
62
2.0
62
92
0
209
28
33
18
19
1.95
41418027--41418070
21
2.1
21
100
0
88
36
25
4
34
1.76
41418831--41418877
18
2.4
19
79
17
51
55
2
4
38
1.31
41425867--41425934
33
2.0
34
85
2
93
44
10
26
19
1.82
41427285--41427389
40
2.7
40
89
4
160
24
29
22
22
1.99
41441210--41441234
13
1.9
13
100
0
50
20
48
16
16
1.82
41441609--41441665
24
2.4
24
100
0
114
31
22
7
38
1.81
41442415--41442444
15
2.0
15
100
0
60
20
33
20
26
1.97
41446311--41446376
23
3.0
23
78
8
66
53
1
6
39
1.35
41446386--41446446
30
2.0
30
84
6
79
62
3
1
32
1.21
41446402--41446437
16
2.2
16
95
0
63
66
0
2
30
1.06
41446492--41446538
13
3.4
14
80
13
53
59
2
8
29
1.39
41455328--41455377
15
3.5
15
79
15
52
42
12
24
22
1.87
41455341--41455377
15
2.5
16
87
12
53
43
10
24
21
1.84
41459270--41459315
24
1.9
24
86
0
65
54
0
6
39
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41459356--41459391
16
2.2
16
95
0
63
66
0
2
30
1.06
41460503--41460528
13
2.0
13
100
0
52
23
30
30
15
1.95
41469538--41469747
40
5.3
40
87
2
282
25
27
23
22
2.00
41474834--41474864
14
2.2
14
100
0
62
29
29
12
29
1.94
41477668--41477707
21
1.9
21
89
0
62
25
15
25
35
1.94
41481624--41481729
48
2.2
48
93
0
176
33
5
27
33
1.80
41489285--41489374
40
2.2
40
88
3
128
27
28
17
25
1.98
41491193--41491392
39
5.1
39
91
1
312
30
28
21
20
1.98
41492632--41492709
39
2.0
39
97
0
147
39
30
6
23
1.79
41498665--41498727
26
2.4
27
76
10
69
34
6
6
52
1.52
41498858--41498911
24
2.3
24
77
3
65
38
0
1
59
1.08
41501171--41501312
40
3.6
40
90
2
216
24
22
26
26
2.00
41502698--41502738
5
8.8
5
84
10
52
39
0
0
60
0.96
41503036--41503069
17
2.1
16
88
5
50
35
5
0
58
1.22
41503434--41503466
18
1.9
17
88
11
50
45
0
0
54
0.99
41504935--41504967
5
6.6
5
92
0
57
18
3
0
78
0.87
41505169--41505252
28
3.0
28
98
0
159
41
10
33
14
1.80
41511771--41511845
36
2.1
36
94
0
132
37
18
10
33
1.86
41519178--41519330
47
3.2
46
82
4
171
31
30
16
21
1.96
41519178--41519384
47
4.2
48
79
7
168
30
28
16
24
1.96
41521681--41521777
30
3.2
30
81
10
99
57
14
17
10
1.64
41521689--41521768
15
5.4
15
80
7
92
58
13
17
10
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41521700--41521777
15
5.2
15
78
9
79
56
15
16
11
1.67
41525311--41525517
47
4.2
48
78
7
168
30
28
15
24
1.96
41531446--41531637
40
4.8
40
92
1
226
27
27
21
23
1.99
41531417--41531636
80
2.8
80
81
4
248
28
27
20
23
1.99
41535741--41535772
16
2.0
16
100
0
64
62
12
6
18
1.50
41537446--41537484
12
3.5
12
86
13
57
61
7
5
25
1.44
41537533--41537562
15
2.0
15
93
0
51
73
0
10
16
1.09
41541639--41541673
18
1.9
18
88
0
52
28
2
20
48
1.63
41542223--41542263
11
3.7
11
80
0
55
56
9
14
19
1.66
41544519--41544546
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325