genome.fa.s3.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  152  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48632181--48632644	27	17.2	27	82	4	517	40	9	21	28	1.85
48638004--48638149	40	3.6	40	81	1	139	26	16	23	33	1.96
48638727--48638812	42	2.0	42	95	0	154	31	6	24	37	1.82
48649839--48649864	13	2.0	13	100	0	52	15	23	38	23	1.92
48651663--48651731	22	3.1	22	71	8	59	10	15	23	50	1.74
48653687--48653730	18	2.4	18	96	3	79	43	11	0	45	1.40
48653980--48654121	59	2.4	60	83	3	162	26	14	13	45	1.82
48658969--48659032	21	3.0	21	81	0	56	25	6	20	48	1.72
48663123--48663186	17	3.7	17	73	17	60	57	4	4	32	1.40
48663542--48663574	11	2.8	12	86	9	50	36	0	0	63	0.95
48663576--48663615	18	2.2	18	86	8	55	67	12	0	20	1.22
48663699--48663757	30	2.0	30	96	0	109	62	8	0	28	1.24
48664554--48664609	14	3.6	16	79	18	64	48	0	0	51	1.00
48665831--48665903	22	3.2	22	67	14	67	38	21	20	19	1.94
48665815--48665909	46	2.1	46	97	0	181	34	22	22	21	1.97
48666514--48666543	15	1.9	16	93	6	53	46	13	6	33	1.69
48666591--48666629	18	2.2	18	86	9	53	35	12	12	38	1.82
48673668--48673778	40	2.8	40	95	0	195	22	22	26	28	1.99
48676173--48676353	46	3.9	47	78	1	154	32	24	16	27	1.96
48676177--48676353	92	1.9	92	85	0	246	32	23	16	27	1.96
48681783--48682002	39	5.6	39	85	4	248	30	19	23	26	1.98
48681783--48682002	78	2.8	78	86	4	293	30	19	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48681782--48682002	117	1.9	117	85	5	313	30	19	23	26	1.98
48684145--48684280	48	2.8	48	79	0	146	27	14	27	30	1.95
48686659--48686741	29	2.9	29	85	7	91	25	15	32	26	1.96
48686679--48686741	28	2.2	29	91	2	101	23	15	33	26	1.95
48687043--48687137	27	3.5	27	81	2	102	42	21	7	29	1.80
48689465--48689625	42	3.8	42	83	7	211	31	14	24	30	1.94
48689472--48689644	85	2.1	83	84	6	224	28	13	26	31	1.94
48697557--48697961	199	2.0	199	98	0	785	30	17	15	37	1.90
48698604--48698765	42	3.9	41	78	3	180	32	16	22	27	1.96
48700554--48700657	40	2.6	40	84	1	127	30	25	18	25	1.98
48700503--48700688	40	4.6	39	74	7	124	30	25	17	27	1.97
48706687--48706878	47	4.1	47	96	0	357	31	8	29	30	1.87
48706846--48706910	32	2.0	32	100	0	130	27	12	35	24	1.91
48706799--48706957	79	2.0	79	95	0	282	30	10	30	28	1.90
48706878--48707156	47	5.9	47	93	0	432	31	9	30	27	1.89
48706705--48707051	173	2.0	173	98	0	667	31	9	30	29	1.88
48706687--48707098	220	1.9	220	96	0	770	31	8	29	29	1.87
48707279--48707357	37	2.1	37	86	4	106	25	17	30	26	1.97
48716195--48716354	43	3.7	43	76	5	135	31	23	20	25	1.98
48719980--48720183	53	3.8	53	73	5	140	38	16	24	21	1.93
48723958--48724165	6	33.7	6	71	18	124	50	14	16	18	1.78
48723983--48724165	19	10.2	18	68	20	107	49	14	17	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48724014--48724102	25	3.6	25	92	0	142	48	14	17	19	1.81
48723977--48724165	87	2.2	87	90	1	299	49	14	16	18	1.79
48724061--48724142	37	2.2	37	82	8	112	47	14	18	19	1.82
48724105--48724165	25	2.4	25	86	0	86	50	11	18	19	1.76
48724681--48724743	27	2.4	26	78	5	72	28	20	15	34	1.94
48724722--48724848	27	4.7	27	87	0	184	29	7	22	40	1.82
48726382--48726550	41	4.2	40	72	18	143	27	27	21	23	1.99
48734721--48734890	41	4.2	40	74	18	161	27	27	22	22	1.99
48738155--48738294	43	3.3	43	87	2	210	35	22	18	23	1.96
48741944--48741988	16	2.6	17	86	13	58	62	0	24	13	1.31
48743210--48743243	18	1.9	18	88	5	52	44	2	2	50	1.32
48743449--48743499	20	2.5	20	74	0	57	47	33	0	19	1.50
48743710--48743757	7	6.7	7	78	4	51	45	29	2	22	1.64
48743855--48743905	17	3.2	15	79	17	59	19	0	31	49	1.49
48743960--48744159	41	4.9	41	87	5	262	20	25	22	32	1.97
48751187--48751274	43	2.1	42	82	6	106	35	31	14	18	1.91
48754600--48754793	39	5.1	39	81	4	207	17	31	15	35	1.91
48754612--48754673	19	3.2	19	71	13	63	12	29	19	38	1.89
48758423--48758473	25	2.0	25	88	0	75	29	11	23	35	1.90
48764260--48764320	26	2.3	26	100	0	122	29	22	22	24	1.99
48764530--48764572	23	1.9	23	90	4	70	23	2	51	23	1.60
48777191--48777360	46	3.7	44	78	10	164	24	16	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48777185--48777356	93	1.8	93	90	2	274	23	17	26	32	1.97
48784735--48784907	46	3.7	46	80	13	219	21	21	28	28	1.98
48784732--48784902	93	1.8	93	96	0	315	21	21	29	28	1.98
48794199--48794258	29	2.1	29	93	0	102	41	18	15	25	1.89
48795971--48796020	26	2.0	25	84	4	64	32	24	20	24	1.98
48802159--48802200	22	2.0	22	90	4	68	21	26	40	11	1.88
48803222--48803427	45	4.5	44	77	15	161	24	28	18	28	1.98
48810056--48810115	30	2.0	30	93	0	102	58	15	1	25	1.46
48811455--48811581	47	2.8	44	82	12	141	23	32	18	25	1.97
48812782--48813240	230	2.0	230	94	0	810	40	16	15	27	1.89
48823491--48823674	40	4.6	40	84	2	244	23	26	23	26	2.00
48834163--48834256	28	3.5	26	75	12	82	34	23	24	18	1.96
48834358--48834432	26	2.9	26	93	0	123	22	13	28	36	1.92
48842071--48842186	28	4.2	28	76	2	110	36	18	24	20	1.95
48846528--48846567	16	2.5	16	100	0	80	32	5	30	32	1.79
48852515--48852739	40	5.7	40	86	5	278	25	28	22	24	2.00
48852517--48852739	119	1.9	120	84	6	301	25	27	22	24	2.00
48853867--48854042	56	3.1	56	99	0	343	22	22	9	45	1.80
48871247--48871278	16	1.9	17	93	6	57	37	9	9	43	1.69
48871531--48871707	41	4.3	41	91	0	257	25	16	26	31	1.96
48871551--48871748	82	2.4	82	85	1	238	24	14	27	32	1.95
48874984--48875021	16	2.2	18	86	9	53	50	10	0	39	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48877189--48877227	20	2.0	20	89	0	60	17	12	28	41	1.87
48886112--48886233	43	2.9	42	83	11	176	31	15	23	28	1.95
48887780--48887822	18	2.4	19	84	11	63	18	41	25	13	1.88
48888505--48888613	53	2.1	53	98	0	209	34	9	19	36	1.83
48889980--48890166	50	3.8	49	82	7	207	25	18	27	28	1.98
48910759--48910830	33	2.2	33	82	2	81	31	26	22	19	1.97
48912729--48912909	40	4.6	40	88	2	240	25	23	25	25	2.00
48914981--48915006	11	2.4	11	100	0	52	7	23	30	38	1.83
48920896--48921003	40	2.7	41	84	7	143	25	24	25	25	2.00
48922381--48922458	26	3.0	26	70	7	68	41	19	19	20	1.91
48922425--48922504	27	3.0	27	78	10	83	37	21	20	21	1.94
48922646--48922786	27	5.3	26	83	7	158	23	24	19	33	1.97
48922646--48922786	54	2.6	54	84	3	178	23	24	19	33	1.97
48922911--48922950	19	2.0	20	85	9	55	40	17	25	17	1.91
48928323--48928435	45	2.6	45	84	8	135	24	27	23	23	2.00
48928765--48928876	43	2.6	43	91	0	188	28	31	27	12	1.93
48928869--48929069	38	5.3	38	81	3	233	30	24	21	23	1.99
48928869--48929054	78	2.4	78	82	1	232	30	24	22	23	1.99
48934725--48934773	23	2.1	23	85	7	64	73	20	0	6	1.04
48937162--48937416	131	1.9	132	80	2	298	30	19	16	33	1.94
48937350--48937676	131	2.5	129	77	3	291	25	19	17	37	1.93
48949192--48949901	44	16.1	44	85	1	823	30	14	27	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48951472--48951537	28	2.4	25	72	20	60	22	22	9	45	1.80
48953942--48954119	27	6.6	27	83	6	189	29	28	14	26	1.95
48953963--48954117	81	1.9	82	88	4	233	29	28	14	27	1.95
48955924--48956178	131	1.9	132	80	2	289	30	20	16	32	1.95
48956059--48956299	131	1.8	131	80	3	288	29	18	17	34	1.94
48956112--48956441	129	2.5	129	78	3	342	25	19	17	37	1.93
48958129--48958220	27	3.4	27	93	0	148	35	17	21	25	1.95
48958356--48958406	27	1.9	26	84	11	68	21	23	19	35	1.96
48958624--48958695	33	2.1	34	84	5	101	26	23	26	23	2.00
48961115--48961463	68	5.3	65	68	18	170	25	28	16	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325