Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  140  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45273621--45273658
18
2.0
19
90
10
60
76
0
13
10
1.02
45273621--45273658
9
4.1
9
86
10
51
76
0
13
10
1.02
45275378--45275417
20
2.0
20
90
0
62
25
40
25
10
1.86
45279422--45279469
3
16.0
3
82
8
62
66
0
33
0
0.92
45279787--45279925
36
3.9
36
90
1
181
17
8
23
50
1.73
45279808--45279867
20
3.2
20
67
26
58
15
6
25
53
1.65
45280130--45280175
23
2.0
24
86
4
67
26
21
4
47
1.69
45281472--45281596
2
62.5
2
95
0
223
48
51
0
0
1.00
45283491--45283628
62
2.2
62
90
0
222
47
23
7
21
1.76
45283913--45283973
18
3.5
19
76
13
60
63
19
1
14
1.38
45283941--45283986
6
7.7
6
87
0
65
63
13
4
19
1.46
45284655--45284747
48
1.9
49
91
6
154
50
1
1
47
1.15
45284846--45284875
8
3.8
8
100
0
60
23
0
0
76
0.78
45288601--45288770
84
2.0
85
91
4
281
29
21
18
30
1.97
45290137--45290203
18
3.6
18
72
16
57
43
8
1
46
1.44
45299164--45299351
40
4.7
40
88
3
281
25
26
23
25
2.00
45311483--45311598
39
3.0
39
76
0
133
31
9
18
39
1.83
45311567--45312090
37
14.4
37
77
4
469
29
15
19
35
1.93
45311541--45312090
73
7.5
74
78
3
522
29
15
19
36
1.92
45311541--45312085
110
5.0
110
80
4
492
28
15
19
35
1.93
45313696--45313724
15
1.9
15
100
0
58
48
0
17
34
1.47
45320510--45320617
54
2.0
54
100
0
216
40
22
9
27
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45328746--45328780
16
2.2
16
94
0
61
28
11
22
37
1.89
45331492--45331522
12
2.7
11
90
9
53
48
0
19
32
1.49
45331510--45331557
23
2.1
22
81
11
53
60
0
12
27
1.32
45332965--45333148
96
1.9
97
86
5
266
30
26
15
28
1.96
45335208--45335383
46
3.8
46
79
10
205
21
21
28
28
1.98
45335205--45335376
93
1.8
93
93
0
299
21
22
29
27
1.99
45338290--45338346
30
2.0
29
86
13
82
10
15
14
59
1.60
45340714--45340883
47
3.7
47
80
12
192
21
21
28
27
1.99
45345437--45345492
21
2.6
23
78
10
66
21
26
35
16
1.94
45346589--45346670
5
16.4
5
74
20
66
73
0
4
21
1.02
45350379--45350428
10
5.0
10
76
13
50
70
2
6
22
1.20
45352452--45352500
20
2.5
20
83
6
64
71
2
2
24
1.07
45352452--45352500
10
4.9
10
79
0
53
71
2
2
24
1.07
45352454--45352493
14
2.9
14
88
0
53
70
2
0
27
1.01
45352518--45352550
13
2.8
12
90
9
50
51
12
0
36
1.39
45353119--45353156
18
2.1
18
100
0
76
5
13
0
81
0.85
45353117--45353170
20
2.7
19
78
13
56
5
14
0
79
0.90
45355250--45355287
17
2.5
15
80
19
51
39
10
15
34
1.82
45355250--45355328
19
4.2
19
85
9
108
37
10
17
34
1.84
45362102--45362167
31
2.2
31
84
10
93
80
0
19
0
0.72
45362101--45362167
30
2.2
32
82
15
88
80
0
19
0
0.71
45362116--45362173
24
2.5
22
89
8
89
79
0
20
0
0.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45362118--45362173
16
3.6
16
79
15
73
80
0
19
0
0.71
45362112--45362157
6
7.8
6
76
13
51
80
0
19
0
0.71
45363070--45363482
44
9.4
44
71
9
288
30
16
24
28
1.97
45363070--45363482
132
3.1
132
90
0
655
30
16
24
28
1.97
45363457--45363549
44
2.1
44
85
0
123
33
13
26
25
1.94
45363536--45364250
205
3.5
205
95
0
1261
30
19
22
28
1.98
45364770--45364867
19
5.2
19
91
7
155
36
10
17
35
1.84
45364761--45364845
36
2.4
35
85
14
113
37
10
15
36
1.82
45364776--45364846
36
2.0
36
100
0
142
38
11
14
36
1.81
45368951--45369175
40
5.7
40
79
8
192
25
20
28
25
1.99
45369031--45369208
79
2.2
80
80
7
186
26
21
28
24
1.99
45378824--45378868
15
3.2
14
90
9
58
60
0
13
26
1.34
45378824--45378863
15
2.7
15
96
3
73
60
0
15
25
1.35
45382536--45382649
43
2.7
43
86
2
140
21
14
28
35
1.93
45382670--45382797
63
2.0
63
96
0
238
22
15
24
37
1.93
45392277--45392331
22
2.5
21
85
11
67
27
0
23
49
1.51
45392457--45392490
16
2.2
16
89
5
52
47
0
11
41
1.40
45392443--45392532
19
4.8
19
78
10
105
38
0
17
43
1.50
45392906--45392931
7
3.7
7
100
0
52
57
11
0
30
1.34
45393070--45393497
126
3.4
125
90
0
658
35
17
17
28
1.93
45396029--45396069
18
2.3
18
86
0
55
43
7
26
21
1.79
45397636--45397797
48
3.3
49
79
9
114
52
6
8
32
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45397663--45397797
48
2.8
46
84
6
155
53
5
8
32
1.55
45397966--45398004
20
2.0
19
85
5
51
46
0
17
35
1.49
45398899--45398936
18
2.1
18
85
9
51
36
2
0
60
1.11
45401860--45401938
13
5.5
13
69
19
59
26
39
22
11
1.88
45401851--45401946
30
3.2
30
95
2
176
21
38
25
14
1.91
45402641--45402803
47
3.5
47
81
9
190
22
28
18
30
1.97
45402632--45402808
94
1.9
94
89
2
275
22
28
18
29
1.97
45403352--45403376
4
6.2
4
100
0
50
76
0
24
0
0.80
45405624--45405681
30
1.9
30
85
0
80
27
25
12
34
1.91
45411486--45411791
67
4.6
67
80
1
328
34
15
21
27
1.94
45412907--45412945
17
2.3
17
90
0
60
28
30
15
25
1.96
45413189--45413262
34
2.2
34
92
2
123
32
9
21
36
1.86
45415654--45415704
25
2.0
27
84
7
70
50
1
9
37
1.47
45419286--45419456
93
1.8
93
87
2
254
21
19
27
30
1.98
45419686--45419723
19
2.0
20
85
15
53
36
0
23
39
1.55
45426134--45426303
47
3.6
47
90
1
250
32
8
30
28
1.86
45431122--45431293
46
3.7
46
78
3
202
22
20
27
29
1.99
45431119--45431288
92
1.8
92
93
0
295
21
21
28
28
1.99
45431518--45431555
19
2.0
20
85
15
53
36
0
23
39
1.55
45453862--45453913
27
2.0
26
84
3
68
34
21
26
17
1.95
45460040--45460089
25
2.0
25
100
0
100
44
0
16
40
1.47
45460045--45460091
19
2.5
19
70
16
53
48
0
14
36
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45460043--45460106
25
2.6
25
87
2
85
51
0
14
34
1.42
45461501--45461548
24
2.0
24
88
8
71
33
0
8
58
1.28
45474784--45475000
46
4.7
46
75
10
151
23
29
18
28
1.98
45476240--45476347
42
2.5
43
84
1
137
18
18
30
32
1.95
45476240--45476355
43
2.7
42
85
1
142
19
17
31
31
1.95
45477920--45477956
19
1.9
19
88
0
56
18
21
43
16
1.88
45479047--45479100
27
2.0
28
85
10
76
27
9
27
35
1.87
45489897--45489922
10
2.6
10
100
0
52
34
0
23
42
1.54
45495571--45495608
19
2.0
19
100
0
76
42
5
10
42
1.62
45496258--45496293
19
1.9
19
88
5
56
30
19
8
41
1.81
45497556--45497646
29
3.2
29
81
6
107
27
34
15
23
1.94
45502322--45502456
40
3.4
40
80
8
141
25
17
25
30
1.97
45510430--45510512
40
2.1
40
88
0
121
28
16
21
32
1.96
45510486--45510562
40
1.9
40
86
5
111
25
16
27
29
1.97
45512730--45512789
24
2.5
24
91
0
93
21
46
5
26
1.72
45513264--45513348
29
3.0
28
83
6
93
27
32
15
24
1.95
45520933--45520996
18
3.6
18
89
4
94
37
12
14
35
1.83
45520925--45520996
17
3.9
19
83
10
105
37
11
15
36
1.83
45520988--45521032
21
2.0
23
83
8
58
37
4
13
44
1.64
45522433--45522457
12
2.1
12
100
0
50
40
0
16
44
1.47
45526666--45526721
7
7.9
7
79
16
62
83
0
16
0
0.64
45526676--45526720
6
7.8
6
76
18
51
84
0
15
0
0.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45526666--45526721
21
2.6
21
89
10
87
83
0
16
0
0.64
45527955--45528405
78
5.8
78
91
2
708
31
18
24
25
1.97
45528419--45528617
45
4.5
45
82
9
223
33
14
28
23
1.94
45528419--45528617
88
2.2
90
84
7
264
33
14
28
23
1.94
45528969--45529032
18
3.6
18
89
4
94
37
12
14
35
1.83
45528961--45529032
17
3.9
19
83
10
105
37
11
15
36
1.83
45530468--45530492
12
2.1
12
100
0
50
40
0
16
44
1.47
45535398--45535446
25
2.0
25
83
0
62
40
6
4
48
1.47
45541664--45542230
105
5.4
105
94
2
980
55
4
4
35
1.42
45541945--45541975
14
2.3
14
94
5
55
64
0
0
35
0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325