Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  324  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104717432--104717461
13
2.3
13
94
0
51
53
13
3
30
1.56
104721312--104721337
11
2.4
11
100
0
52
23
15
15
46
1.83
104726632--104726679
23
2.1
23
100
0
96
56
4
4
35
1.38
104734403--104734442
4
10.0
4
83
0
53
27
5
22
45
1.73
104738624--104738667
15
3.1
15
87
9
58
25
45
0
29
1.54
104741200--104741241
21
2.0
21
100
0
84
38
19
4
38
1.73
104743421--104743488
29
2.3
28
82
9
82
61
10
7
20
1.51
104748782--104748841
30
2.0
29
87
3
84
40
6
10
43
1.64
104749438--104749493
25
2.3
24
84
3
67
41
1
10
46
1.49
104752156--104752642
243
2.0
243
100
0
974
30
18
16
34
1.93
104756707--104756969
109
2.4
109
94
1
456
37
7
14
40
1.74
104762286--104762345
31
1.9
31
93
0
102
11
25
33
30
1.91
104764383--104764707
165
2.0
165
99
0
641
40
20
6
32
1.78
104764985--104765044
30
2.1
27
84
9
75
50
1
3
45
1.28
104773012--104773175
42
3.7
42
85
8
195
29
27
14
28
1.95
104773082--104773265
49
3.8
49
82
7
191
31
26
13
28
1.94
104773095--104773268
47
3.7
47
80
7
174
31
26
14
28
1.95
104773287--104773466
31
5.8
31
92
0
297
26
28
18
26
1.98
104773434--104773570
50
2.7
51
88
3
206
24
23
17
35
1.96
104778680--104778719
20
2.0
20
85
0
53
35
10
5
50
1.58
104785779--104785824
12
3.8
12
85
0
56
43
19
8
28
1.80
104795809--104795860
20
2.5
20
78
3
59
26
17
5
50
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104803414--104803478
32
2.0
32
96
0
121
47
6
10
35
1.63
104824311--104825032
357
2.0
357
99
0
1417
34
19
12
34
1.89
104827298--104827362
30
2.2
30
83
5
78
46
7
4
41
1.53
104828657--104828702
23
2.0
23
100
0
92
43
8
4
43
1.55
104842683--104842720
19
2.0
20
89
5
60
44
0
7
47
1.32
104842740--104842779
20
2.0
20
90
5
62
32
0
2
65
1.06
104842738--104842795
11
5.4
11
74
16
50
37
0
1
60
1.07
104846512--104846702
99
1.9
99
98
0
373
24
24
20
30
1.99
104851261--104851380
33
3.6
33
77
2
116
50
9
35
5
1.56
104851320--104851400
33
2.5
33
81
0
99
56
9
29
3
1.49
104856738--104856787
18
2.8
18
78
0
55
16
34
26
24
1.95
104859729--104859826
49
2.0
49
87
0
142
14
18
6
61
1.53
104866773--104866802
15
2.0
15
93
0
51
23
0
16
60
1.36
104867033--104867081
22
2.2
23
85
3
64
46
2
4
46
1.33
104871006--104871067
31
2.0
31
96
0
115
41
11
6
40
1.66
104875537--104875618
41
2.0
41
80
2
94
58
3
0
37
1.16
104875566--104875603
12
3.1
13
81
11
53
68
0
0
31
0.90
104877506--104877530
2
12.5
2
100
0
50
52
0
0
48
1.00
104878727--104878776
26
1.9
26
88
8
75
62
6
6
26
1.42
104879390--104879429
21
2.0
21
85
5
55
47
0
10
42
1.37
104888263--104888302
21
2.0
20
90
5
62
40
5
7
47
1.54
104890438--104890481
21
2.0
21
86
8
61
36
0
2
61
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104898625--104898677
12
4.5
12
73
4
54
18
0
9
71
1.12
104905023--104905097
37
2.0
37
97
0
141
41
17
5
36
1.72
104909411--104909563
79
1.9
79
90
0
243
35
7
13
43
1.71
104909960--104910005
19
2.4
19
79
13
58
36
2
8
52
1.45
104914041--104914081
21
2.0
21
90
0
64
19
29
21
29
1.98
104917736--104919596
200
9.4
200
93
3
3120
40
14
28
16
1.88
104918870--104919596
184
3.9
184
89
6
1139
39
14
28
17
1.89
104918668--104919596
384
2.4
384
97
0
1732
39
14
27
17
1.89
104927604--104927653
17
2.7
20
78
18
70
10
0
44
46
1.37
104932231--104932280
17
2.7
20
78
18
70
10
0
44
46
1.37
104954770--104954804
2
17.5
2
100
0
70
48
0
0
51
1.00
104960201--104960252
27
1.9
27
84
0
68
30
28
25
15
1.96
104960463--104960676
107
2.0
107
97
1
403
43
5
7
42
1.57
104967350--104967395
24
2.0
23
88
12
69
21
17
21
39
1.93
104967881--104967924
5
8.8
5
100
0
88
38
0
0
61
0.96
104975820--104975891
18
4.0
18
90
0
117
36
18
19
26
1.94
104975821--104975894
36
2.1
36
94
0
130
37
17
17
27
1.92
104985676--104985724
22
2.2
22
85
3
62
12
2
28
57
1.46
104985673--104985730
23
2.5
24
77
13
66
12
1
31
55
1.47
104985675--104985750
24
3.2
23
80
10
73
9
1
26
63
1.32
104986083--104986168
3
29.3
3
73
19
60
29
3
1
66
1.16
104986083--104986172
18
4.7
18
77
13
83
30
3
1
65
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104986246--104986280
12
2.8
12
91
4
52
31
0
5
62
1.18
104986374--104986430
17
3.1
19
78
14
66
31
0
7
61
1.23
104986513--104986542
12
2.5
12
94
0
51
46
6
0
46
1.29
104994043--104994067
2
12.5
2
100
0
50
48
0
0
52
1.00
104998370--104998410
21
2.0
21
90
0
64
29
21
29
19
1.98
105003955--105004006
27
1.9
27
84
0
68
30
28
25
15
1.96
105004217--105004430
107
2.0
107
97
1
403
43
5
7
42
1.57
105006927--105006960
17
2.0
17
94
0
59
44
50
0
5
1.26
105011566--105011599
17
2.0
17
94
0
59
44
50
0
5
1.26
105016209--105016254
24
2.0
23
88
12
69
21
17
21
39
1.93
105016740--105016773
5
6.8
5
100
0
68
38
0
0
61
0.96
105032001--105032041
21
2.0
21
90
0
64
29
21
29
19
1.98
105043567--105043596
13
2.3
13
94
0
51
36
10
6
46
1.64
105053837--105053877
21
2.0
21
90
0
64
19
29
21
29
1.98
105056985--105057025
21
2.0
21
85
9
57
48
0
2
48
1.14
105057962--105057987
13
2.0
13
100
0
52
30
0
7
61
1.24
105060102--105060137
3
12.0
3
100
0
72
33
0
0
66
0.92
105063108--105063139
16
1.9
17
93
6
57
31
0
0
68
0.90
105063099--105063151
27
1.9
28
84
3
72
35
0
0
64
0.94
105067279--105067314
17
2.2
17
90
5
56
66
0
8
25
1.19
105067867--105067946
39
2.0
39
82
4
97
46
10
1
42
1.45
105085680--105085759
39
2.0
40
95
2
144
36
11
22
30
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105088435--105088512
41
2.0
40
87
10
115
55
23
5
16
1.61
105089312--105089350
20
1.9
21
89
5
62
43
10
10
35
1.73
105090756--105090795
21
1.9
21
85
10
55
5
7
7
80
1.03
105099283--105099318
18
2.1
18
94
5
65
30
0
2
66
1.06
105103841--105103959
61
1.9
62
87
1
177
36
30
12
21
1.90
105104796--105104849
22
2.4
23
87
3
74
44
9
0
46
1.35
105108634--105108720
4
22.0
4
88
6
133
50
25
0
24
1.49
105120401--105120451
25
2.0
25
100
0
102
49
3
3
43
1.39
105122118--105122174
16
3.6
16
74
9
62
15
19
0
64
1.28
105127287--105127344
28
2.0
29
90
3
91
29
12
18
39
1.87
105127568--105127682
57
2.0
57
94
0
203
34
11
20
33
1.88
105131787--105131821
12
2.9
12
91
0
52
62
0
20
17
1.32
105132379--105132432
28
1.9
28
85
7
74
29
1
5
62
1.28
105132647--105132702
25
2.1
27
83
6
71
55
1
3
39
1.28
105146235--105146271
15
2.5
15
83
16
51
32
0
0
67
0.91
105158870--105158898
2
14.5
2
100
0
58
48
0
51
0
1.00
105162001--105162032
4
8.0
4
100
0
64
25
0
0
75
0.81
105184995--105185055
32
1.9
32
89
0
95
39
3
8
49
1.49
105189376--105189405
15
2.1
14
93
6
51
90
0
10
0
0.47
105190768--105190801
17
2.0
17
94
0
59
44
50
0
5
1.26
105195405--105195438
17
2.0
17
94
0
59
44
50
0
5
1.26
105198232--105198269
12
3.0
13
84
7
60
65
0
2
31
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105198330--105198520
104
1.8
104
88
2
294
41
12
11
34
1.79
105204303--105204351
24
2.0
24
100
0
98
24
22
8
44
1.79
105220330--105220557
114
2.0
115
87
0
332
30
12
16
39
1.86
105224181--105224274
23
4.1
23
85
0
134
47
4
25
22
1.69
105224508--105224621
58
2.0
58
94
0
201
21
21
14
41
1.90
105228745--105228838
23
4.1
23
85
0
134
47
4
25
22
1.69
105239307--105239344
20
2.0
20
84
5
51
31
7
0
60
1.25
105239406--105239481
27
2.7
27
69
18
66
39
1
2
56
1.21
105239442--105239486
22
2.1
22
87
4
65
33
0
4
62
1.15
105239460--105239509
10
4.9
10
80
4
55
30
2
4
64
1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325